Ec-00_000680.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000680.1
Unique NameEc-00_000680.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length322
Homology
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BLAST of Ec-00_000680.1 vs. uniprot
Match: D7FI17_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI17_ECTSI)

HSP 1 Score: 633 bits (1632), Expect = 4.200e-229
Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 1 
Query:    1 MCARIAEQQRQRASAARRLRQAEDERRLERLVAGRTAMMIRPLDLSVNNHLQQLRASVDASWSSFSTAWDARRARGSGSGSTEGGGLHSDAKATAAPPLPPAAGFVMPPCTHRGAPPAAGSGRGRRHTAVEEGERTAAAEAECPECAAIAAAHVLAGAGAATTGGRLQQQQGRGTDVFDVWAGSSLGVLNADALHRSLTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWNPKSSAVTQRSFILRCVGATWSCWAGGKCWVSMLLIACVVGWLRGLCQWRVGLFATPQNRYNCTTN 963
            MCARIAEQQRQRASAARRLRQAEDERRLERLVAGRTAMMIRPLDLSVNNHLQQLRASVDASWSSFSTAWDARRARGSGSGSTEGGGLHSDAKATAAPPLPPAAGFVMPPCTHRGAPPAAGSGRGRRHTAVEEGERTAAAEAECPECAAIAAAHVLAGAGAATTGGRLQQQQGRGTDVFDVWAGSSLGVLNADALHRSLTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWNPKSSAVTQRSFILRCVGATWSCWAGGKCWVSMLLIACVVGWLRGLCQWRVGLFATPQNRYNCTTN
Sbjct:    1 MCARIAEQQRQRASAARRLRQAEDERRLERLVAGRTAMMIRPLDLSVNNHLQQLRASVDASWSSFSTAWDARRARGSGSGSTEGGGLHSDAKATAAPPLPPAAGFVMPPCTHRGAPPAAGSGRGRRHTAVEEGERTAAAEAECPECAAIAAAHVLAGAGAATTGGRLQQQQGRGTDVFDVWAGSSLGVLNADALHRSLTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWNPKSSAVTQRSFILRCVGATWSCWAGGKCWVSMLLIACVVGWLRGLCQWRVGLFATPQNRYNCTTN 321
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BLAST of Ec-00_000680.1 vs. uniprot
Match: A0A6H5KFP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP0_9PHAE)

HSP 1 Score: 424 bits (1091), Expect = 2.360e-142
Identity = 241/301 (80.07%), Postives = 248/301 (82.39%), Query Frame = 1 
Query:    1 MCARIAEQQRQRASAARRLRQAEDERRLERLVAGRTAMMIRPLDLSVNNHLQQLRASVDASWSSFSTAWDARRARGSGSGSTEGGGLHSDAKATAAPPLPPAAGFVMPPCTHRGAPPAAGSGRGRRHTAVEEGERTAAAEAECPECAAIAAAHVLAGAGAATTGGRLQQQ-------QGRGTDVFDVWAGSSLGVLNADALHRSLTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWNPKSSAVTQ--RSFILRCVGATWSCW-AGGKCWVSMLLI 873
            MCARIA QQRQRASAARRLRQAEDERRLE LVAGRTAMMIRPLDLS NNHLQQLRASVDASWSSFSTAWDARRARGSGSGST+GGG           PLPPAAGFVMPPCTHRGAPPA GSGRGR HTAVE+GERT AAEAECPECAAIAAAHVLAGAGA                 QGRGTDV DVWAGSSLGVLNADAL R+LTFL+PRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWNPKSSAVTQ  R F      ATW  W A G+ + S  L+
Sbjct:  154 MCARIAAQQRQRASAARRLRQAEDERRLESLVAGRTAMMIRPLDLSANNHLQQLRASVDASWSSFSTAWDARRARGSGSGSTDGGG-----------PLPPAAGFVMPPCTHRGAPPA-GSGRGRGHTAVEQGERTLAAEAECPECAAIAAAHVLAGAGAXXXXXXXXXXXXXXXXXQGRGTDVVDVWAGSSLGVLNADALQRALTFLEPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWNPKSSAVTQGWREFFFE-FEATWLEWLAAGQNFESSCLV 441
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BLAST of Ec-00_000680.1 vs. uniprot
Match: A0A835Z6K8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6K8_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.360e-11
Identity = 41/98 (41.84%), Postives = 53/98 (54.08%), Query Frame = 1 
Query:  550 SSLGVLNADALHRSLTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWNPKSSAVTQR-SFILRCVGATWSCWA 840
            S L +L  D   R L  LQP DL ELAQAS+G + AAD++ +W  +W  RFG +W S+  + AA RWH H W+P   A  Q           +W  WA
Sbjct:   98 SFLPLLPDDLRLRCLALLQPEDLFELAQASKGCQAAADAEPLWAGLWQYRFGRVWASQPLQDAAERWHCH-WDPLRHAPLQGWKLFFSQFALSWIGWA 194
The following BLAST results are available for this feature:
BLAST of Ec-00_000680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FI17_ECTSI4.200e-229100.00F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KFP0_9PHAE2.360e-14280.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z6K8_9STRA2.360e-1141.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:914937..915975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length966
Hectar predicted targeting categoryother localisation
Gene idEc-00_000680.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000680Ec-00_000680Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 914937..915975 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000680.1.2Ec-00_000680.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 914937..915110 -
Ec-00_000680.1.1Ec-00_000680.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 915184..915975 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000680.1CDS:Ec-00_000680.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 914937..915110 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000680.1Ec-00_000680.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 914937..915975 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000680.1 ID=Ec-00_000680.1|Name=Ec-00_000680.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=322bp
MCARIAEQQRQRASAARRLRQAEDERRLERLVAGRTAMMIRPLDLSVNNH
LQQLRASVDASWSSFSTAWDARRARGSGSGSTEGGGLHSDAKATAAPPLP
PAAGFVMPPCTHRGAPPAAGSGRGRRHTAVEEGERTAAAEAECPECAAIA
AAHVLAGAGAATTGGRLQQQQGRGTDVFDVWAGSSLGVLNADALHRSLTF
LQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRW
HLHDWNPKSSAVTQRSFILRCVGATWSCWAGGKCWVSMLLIACVVGWLRG
LCQWRVGLFATPQNRYNCTTN*
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spliced messenger RNA

>Ec-00_000680.1 ID=Ec-00_000680.1|Name=Ec-00_000680.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=966bp|location=Sequence derived from alignment at chr_00:914937..915975- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGCCAGGATCGCCGAGCAGCAGCGGCAGCGGGCTTCGGCCGCGAG
GCGCCTGCGCCAGGCGGAGGACGAGCGCAGGCTCGAGAGGTTGGTGGCGG
GGAGGACGGCGATGATGATCCGGCCGCTGGACCTGTCGGTGAACAACCAC
CTGCAACAGCTGCGCGCGTCGGTGGACGCGTCGTGGTCGTCTTTCTCGAC
GGCCTGGGACGCGAGACGGGCGAGGGGTAGCGGGTCGGGAAGCACCGAAG
GCGGCGGGCTGCACTCGGATGCGAAGGCGACTGCTGCGCCGCCGCTACCC
CCCGCCGCCGGGTTCGTGATGCCCCCCTGCACCCACCGCGGAGCCCCCCC
CGCCGCCGGCAGTGGGAGAGGGCGACGGCACACGGCCGTCGAAGAGGGGG
AGAGAACAGCAGCGGCGGAGGCGGAGTGCCCGGAGTGCGCCGCGATTGCC
GCCGCGCACGTGCTCGCCGGCGCCGGCGCCGCCACCACCGGTGGACGGCT
GCAACAGCAGCAGGGGAGAGGAACCGACGTCTTCGACGTCTGGGCGGGTT
CCTCGCTGGGGGTTCTCAACGCAGACGCGCTGCACAGGTCGCTGACCTTC
CTGCAGCCCCGGGACCTGCTAGAGCTGGCGCAGGCGTCGAGGGGGGCCCG
GGAGGCGGCGGACTCGCAGCTGGTGTGGAGGGAGGTGTGGTGGGCGAGGT
TCGGAGCGATCTGGGAGTCGGAGATCTGCAAGAAGGCGGCGCGGAGATGG
CACCTGCACGATTGGAACCCCAAGTCGTCTGCGGTAACTCAGCGTTCGTT
CATTCTCCGTTGCGTTGGTGCCACCTGGAGTTGTTGGGCCGGCGGCAAGT
GCTGGGTGTCCATGCTGCTCATCGCGTGTGTTGTTGGTTGGTTGCGTGGT
TTGTGCCAATGGCGAGTCGGTCTGTTTGCGACACCTCAGAACAGATACAA
TTGTACAACCAACTAG
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protein sequence of Ec-00_000680.1

>Ec-00_000680.1 ID=Ec-00_000680.1|Name=Ec-00_000680.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=322bp
MCARIAEQQRQRASAARRLRQAEDERRLERLVAGRTAMMIRPLDLSVNNH
LQQLRASVDASWSSFSTAWDARRARGSGSGSTEGGGLHSDAKATAAPPLP
PAAGFVMPPCTHRGAPPAAGSGRGRRHTAVEEGERTAAAEAECPECAAIA
AAHVLAGAGAATTGGRLQQQQGRGTDVFDVWAGSSLGVLNADALHRSLTF
LQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRW
HLHDWNPKSSAVTQRSFILRCVGATWSCWAGGKCWVSMLLIACVVGWLRG
LCQWRVGLFATPQNRYNCTTN*
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mRNA from alignment at chr_00:914937..915975-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000680.1 ID=Ec-00_000680.1|Name=Ec-00_000680.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1039bp|location=Sequence derived from alignment at chr_00:914937..915975- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGCGCCAGGATCGCCGAGCAGCAGCGGCAGCGGGCTTCGGCCGCGAG
GCGCCTGCGCCAGGCGGAGGACGAGCGCAGGCTCGAGAGGTTGGTGGCGG
GGAGGACGGCGATGATGATCCGGCCGCTGGACCTGTCGGTGAACAACCAC
CTGCAACAGCTGCGCGCGTCGGTGGACGCGTCGTGGTCGTCTTTCTCGAC
GGCCTGGGACGCGAGACGGGCGAGGGGTAGCGGGTCGGGAAGCACCGAAG
GCGGCGGGCTGCACTCGGATGCGAAGGCGACTGCTGCGCCGCCGCTACCC
CCCGCCGCCGGGTTCGTGATGCCCCCCTGCACCCACCGCGGAGCCCCCCC
CGCCGCCGGCAGTGGGAGAGGGCGACGGCACACGGCCGTCGAAGAGGGGG
AGAGAACAGCAGCGGCGGAGGCGGAGTGCCCGGAGTGCGCCGCGATTGCC
GCCGCGCACGTGCTCGCCGGCGCCGGCGCCGCCACCACCGGTGGACGGCT
GCAACAGCAGCAGGGGAGAGGAACCGACGTCTTCGACGTCTGGGCGGGTT
CCTCGCTGGGGGTTCTCAACGCAGACGCGCTGCACAGGTCGCTGACCTTC
CTGCAGCCCCGGGACCTGCTAGAGCTGGCGCAGGCGTCGAGGGGGGCCCG
GGAGGCGGCGGACTCGCAGCTGGTGTGGAGGGAGGTGTGGTGGGCGAGGT
TCGGAGCGATCTGGGAGTCGGAGATCTGCAAGAAGGCGGCGCGGAGATGG
CACCTGCACGATTGGAACCCCAAGTCGTCTGCGGTAACTCAGGTCAGAGT
TCTCAGCTGTTTTTTTTGGCGGGGGGGGACGGTGGACGGATGGGGGGGTT
GCTCGTGTATTGAAGCGTTCGTTCATTCTCCGTTGCGTTGGTGCCACCTG
GAGTTGTTGGGCCGGCGGCAAGTGCTGGGTGTCCATGCTGCTCATCGCGT
GTGTTGTTGGTTGGTTGCGTGGTTTGTGCCAATGGCGAGTCGGTCTGTTT
GCGACACCTCAGAACAGATACAATTGTACAACCAACTAG
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Coding sequence (CDS) from alignment at chr_00:914937..915975-

>Ec-00_000680.1 ID=Ec-00_000680.1|Name=Ec-00_000680.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=966bp|location=Sequence derived from alignment at chr_00:914937..915975- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGCGCCAGGATCGCCGAGCAGCAGCGGCAGCGGGCTTCGGCCGCGAG
GCGCCTGCGCCAGGCGGAGGACGAGCGCAGGCTCGAGAGGTTGGTGGCGG
GGAGGACGGCGATGATGATCCGGCCGCTGGACCTGTCGGTGAACAACCAC
CTGCAACAGCTGCGCGCGTCGGTGGACGCGTCGTGGTCGTCTTTCTCGAC
GGCCTGGGACGCGAGACGGGCGAGGGGTAGCGGGTCGGGAAGCACCGAAG
GCGGCGGGCTGCACTCGGATGCGAAGGCGACTGCTGCGCCGCCGCTACCC
CCCGCCGCCGGGTTCGTGATGCCCCCCTGCACCCACCGCGGAGCCCCCCC
CGCCGCCGGCAGTGGGAGAGGGCGACGGCACACGGCCGTCGAAGAGGGGG
AGAGAACAGCAGCGGCGGAGGCGGAGTGCCCGGAGTGCGCCGCGATTGCC
GCCGCGCACGTGCTCGCCGGCGCCGGCGCCGCCACCACCGGTGGACGGCT
GCAACAGCAGCAGGGGAGAGGAACCGACGTCTTCGACGTCTGGGCGGGTT
CCTCGCTGGGGGTTCTCAACGCAGACGCGCTGCACAGGTCGCTGACCTTC
CTGCAGCCCCGGGACCTGCTAGAGCTGGCGCAGGCGTCGAGGGGGGCCCG
GGAGGCGGCGGACTCGCAGCTGGTGTGGAGGGAGGTGTGGTGGGCGAGGT
TCGGAGCGATCTGGGAGTCGGAGATCTGCAAGAAGGCGGCGCGGAGATGG
CACCTGCACGATTGGAACCCCAAGTCGTCTGCGGTAACTCAGCGTTCGTT
CATTCTCCGTTGCGTTGGTGCCACCTGGAGTTGTTGGGCCGGCGGCAAGT
GCTGGGTGTCCATGCTGCTCATCGCGTGTGTTGTTGGTTGGTTGCGTGGT
TTGTGCCAATGGCGAGTCGGTCTGTTTGCGACACCTCAGAACAGATACAA
TTGTACAACCAACTAG
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Synonyms
The feature 'Ec-00_000680.1' has the following synonyms
Synonym
Esi1160_0001
Esi_1160_0001