Ec-00_000650.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000650.2
Unique NameEc-00_000650.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length106
Homology
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BLAST of Ec-00_000650.2 vs. uniprot
Match: A0A6H5JDI2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI2_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.200e-24
Identity = 58/79 (73.42%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:   91 VDDTGGGGGAKNGLSPSEIALLPQQTGNGSGPVDQCCVCMEDMKPREKITRLPACLHTFHTSASRSGSKRSPAAPSTKL 327
            +DDTG   GAK GLSPSEI LLPQQTGNGSGPVDQCCVCMEDMKPREKITRLPACLHTFH+       K  P  P  K+
Sbjct:  782 LDDTGXXXGAKKGLSPSEIGLLPQQTGNGSGPVDQCCVCMEDMKPREKITRLPACLHTFHSKCISKWLKEKPCCPIDKV 860
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BLAST of Ec-00_000650.2 vs. uniprot
Match: D7FI15_ECTSI (zf-rbx1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI15_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.370e-9
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 3 
Query:  261 HVSH-KCISKWLKEKPCCPIDKVAVSVNDSG 350
            H  H KCISKWLKEKPCCPIDKVAVSVNDSG
Sbjct:   18 HTFHSKCISKWLKEKPCCPIDKVAVSVNDSG 48
The following BLAST results are available for this feature:
BLAST of Ec-00_000650.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDI2_9PHAE1.200e-2473.42RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FI15_ECTSI1.370e-990.32zf-rbx1 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:887584..889938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1512
Hectar predicted targeting categoryother localisation
Gene idEc-00_000650.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000650Ec-00_000650Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 887583..889939 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000650.2Ec-00_000650.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 887586..887903 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000650.2.3Ec-00_000650.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 887584..888822 -
Ec-00_000650.2.2Ec-00_000650.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 889290..889467 -
Ec-00_000650.2.1Ec-00_000650.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 889844..889938 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0006503UTR:Ec-00_000650.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 887584..887585 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000650.2CDS:Ec-00_000650.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 887586..887903 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0006505UTR:Ec-00_000650.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 887904..888822 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000650.2 ID=Ec-00_000650.2|Name=Ec-00_000650.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=106bp
MLKLLLFHCSLCRRSSPLCEAGRQGYEPVGVSFLVFFEDFASFGRSLLDA
RVYSPEGKKHSGTPGMNDFTGPLHLVGVGARRTLGCGWFWFRSPPSLANR
CVRLGW
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spliced messenger RNA

>Ec-00_000650.2 ID=Ec-00_000650.2|Name=Ec-00_000650.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1512bp|location=Sequence derived from alignment at chr_00:887584..889938- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CGGTGGCGGCGGGGCGGGGCATCCGGCCGGAAGCTTGGCGTCGCTGCAGG
GAAGGGAGCTGACCTCTGAGGATTACCAGCAGCTTCTGGCGTTGGACGAC
ACCGGCGGCGGTGGGGGCGCCAAGAACGGGCTTTCCCCGTCAGAGATCGC
GTTACTCCCGCAGCAAACTGGCAACGGGAGCGGTCCTGTTGACCAGTGCT
GCGTTTGCATGGAGGACATGAAGCCGAGGGAAAAGATCACCCGCCTGCCG
GCCTGCCTCCACACGTTTCACAGCAAGTGCATCTCGAAGTGGCTCAAAGA
GAAGCCCTGCTGCCCCATCGACAAAGTTGCTGTCAGCGTGAACGACTCCG
GGTGAGCTTCTCGTCGACCCCGCGAGCGAGCGGACAACAGCCGGCAGCTT
CCTTCGAACGAGTTGCCCTGTGGCGAACGCGCTCGCGCTCGCGTGTGTAT
GTTATTTGGTGGTCGTCGCTGGGGCTGTTGTATATTTGGCCCTTGGTCCT
TTGGCGTGCCCCTCCTGCTCGACCCCACCTTTTGTCGGCGTGGACTGCTT
TACATTGCGAAGAATTAGGAACGAATGGAATCAAGGCAGCAGTCGGCTAT
TGTTTTGCCCGCGGAGATGCGGCCCACCTGGACTGCAAGGCATTCACGTG
AGCGGTGATGCTGATGGGCGGGAGAATCTTTTACGGGGGGGTCGTGGATT
TGTCGTGTCCGCTGTGTGCCCTCGGAGCACCCTAGACGGACACGTGCGGG
CTGGGGCGAGAGGGAAGAGTTGCCGGGCTGGCGGGAGGGGTGTGGAGGGG
AACGTGGACGTAGTGAACGGACAGATATTTTTGTGAGGGCTCCTGCAGGC
GTTTTGCTCGCTCAGGAAGGCTAGCTGTATCTACCTGAGGCACCTGCATG
TCCTGGAGACACGTTGGTACGTTGGTACGCCCGAGAGTTTGTTGGACGTC
TATCGGTGCTGTTCATGGTGACTTTTGCCTTGCCGTTCTCAGGCAGACCG
ACTGCTAAGGCTCTTGAATTGGCTTGGGTGCCCTGGGGGGGTCAAATTGT
TGGCTTCGCGGGTATTTGAGCGTGAGCAGGGGAAGGGCGGTGATCGTACA
TCGAGCGCTCTCTCTCCCTCTCTCTTGCTCATTATGCCTATGTCTGCGCA
GTCCTCTCCACCCCCCAATCTCCGACCCGCGGGGTTGATGACATGTTGAA
ACTGCTGCTGTTTCATTGCAGCCTCTGCCGGCGCTCGTCGCCGCTTTGTG
AGGCAGGGAGGCAGGGATACGAGCCCGTCGGCGTGAGTTTTCTCGTGTTT
TTTGAGGATTTTGCCTCTTTCGGTCGGTCACTCTTGGACGCACGGGTGTA
CTCCCCGGAAGGTAAAAAGCATTCGGGCACACCCGGCATGAATGATTTTA
CGGGGCCTCTTCATCTCGTGGGTGTTGGAGCAAGGCGAACGTTGGGGTGT
GGCTGGTTTTGGTTCCGGAGTCCACCTTCGCTTGCAAATCGATGCGTTCG
TCTTGGTTGGGG
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protein sequence of Ec-00_000650.2

>Ec-00_000650.2 ID=Ec-00_000650.2|Name=Ec-00_000650.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=106bp
MLKLLLFHCSLCRRSSPLCEAGRQGYEPVGVSFLVFFEDFASFGRSLLDA
RVYSPEGKKHSGTPGMNDFTGPLHLVGVGARRTLGCGWFWFRSPPSLANR
CVRLGW
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mRNA from alignment at chr_00:887584..889938-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000650.2 ID=Ec-00_000650.2|Name=Ec-00_000650.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2355bp|location=Sequence derived from alignment at chr_00:887584..889938- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CGGTGGCGGCGGGGCGGGGCATCCGGCCGGAAGCTTGGCGTCGCTGCAGG
GAAGGGAGCTGACCTCTGAGGATTACCAGCAGCTTCTGGCGTTGGGTGAG
TGAGTGAGACACGGGTGGGTGTTGCGGTTGCGTTGCACGCCGCCCGTCGT
CAGGAGGGATGAGCCTCACGCAGCAGCGGGAACCGCTGTTCAGTCAGCGT
TTAGCGTTAGCGAACAAAACGAAATGTGTAGATTTCTCGCATTCCCGCTT
GTCGGGAGGGTTGTGTTTACGGTGGCACACACGCTACTAAAATTGCAGTA
AGTATATGGCTCTTTGACGGAAGGTTAACGGCTCTTTGAGGGAAGGATAA
CGACCTTCCGGGAGTGTCGGCGTGCGAGGTGGTTTCCTTTCATCCCCGTC
TCGACGCACGAAGCCGAGCGAAATCTCACCCTTGTTTACCCACTGGTGGT
TCTCCCGGCGCGCCCGCGCAGACGACACCGGCGGCGGTGGGGGCGCCAAG
AACGGGCTTTCCCCGTCAGAGATCGCGTTACTCCCGCAGCAAACTGGCAA
CGGGAGCGGTCCTGTTGACCAGTGCTGCGTTTGCATGGAGGACATGAAGC
CGAGGGAAAAGATCACCCGCCTGCCGGCCTGCCTCCACACGTTTCACAGG
TGCGCGCTCGTTTTTCGTTGTTGGCGATGAGATGGTCGGTGAGACTGGTG
GGAGCCCTCTTGTCTTTGGGTTGCTGTTGTTGCAGGTGTACGGCGATTCA
ACACATGGCTGGGCAATATAAACATGCAGAGCGGTCTAAAATTTAGTATG
ATAGTGCGATACACGGCATCGTCGGGCTGTGTCCCTTTTTTTGATTAAAA
AAATATGCATAACCTCACAGAAGATTACCTATTTCTCGAGCTGAATTCTT
CGAGCAGTCCGGACGCTGTTTCATGCGCATAGAAGGCCCTGTTTCTACAT
CTGTACCCCTTTTTTTGCTTGGATTTTTCCGTCGTTTTAGCCGTGGCCGT
CGCGCACCGCATCTATCCCTCTTTCATTGGCGCGGGAGTGAACTTACCAC
GAGTATTTCATCTCCCCTGACCCCCACCGCGCTCCCTCGTCGCCCGGATG
GACCCTCGTGCCGCAGCAAGTGCATCTCGAAGTGGCTCAAAGAGAAGCCC
TGCTGCCCCATCGACAAAGTTGCTGTCAGCGTGAACGACTCCGGGTGAGC
TTCTCGTCGACCCCGCGAGCGAGCGGACAACAGCCGGCAGCTTCCTTCGA
ACGAGTTGCCCTGTGGCGAACGCGCTCGCGCTCGCGTGTGTATGTTATTT
GGTGGTCGTCGCTGGGGCTGTTGTATATTTGGCCCTTGGTCCTTTGGCGT
GCCCCTCCTGCTCGACCCCACCTTTTGTCGGCGTGGACTGCTTTACATTG
CGAAGAATTAGGAACGAATGGAATCAAGGCAGCAGTCGGCTATTGTTTTG
CCCGCGGAGATGCGGCCCACCTGGACTGCAAGGCATTCACGTGAGCGGTG
ATGCTGATGGGCGGGAGAATCTTTTACGGGGGGGTCGTGGATTTGTCGTG
TCCGCTGTGTGCCCTCGGAGCACCCTAGACGGACACGTGCGGGCTGGGGC
GAGAGGGAAGAGTTGCCGGGCTGGCGGGAGGGGTGTGGAGGGGAACGTGG
ACGTAGTGAACGGACAGATATTTTTGTGAGGGCTCCTGCAGGCGTTTTGC
TCGCTCAGGAAGGCTAGCTGTATCTACCTGAGGCACCTGCATGTCCTGGA
GACACGTTGGTACGTTGGTACGCCCGAGAGTTTGTTGGACGTCTATCGGT
GCTGTTCATGGTGACTTTTGCCTTGCCGTTCTCAGGCAGACCGACTGCTA
AGGCTCTTGAATTGGCTTGGGTGCCCTGGGGGGGTCAAATTGTTGGCTTC
GCGGGTATTTGAGCGTGAGCAGGGGAAGGGCGGTGATCGTACATCGAGCG
CTCTCTCTCCCTCTCTCTTGCTCATTATGCCTATGTCTGCGCAGTCCTCT
CCACCCCCCAATCTCCGACCCGCGGGGTTGATGACATGTTGAAACTGCTG
CTGTTTCATTGCAGCCTCTGCCGGCGCTCGTCGCCGCTTTGTGAGGCAGG
GAGGCAGGGATACGAGCCCGTCGGCGTGAGTTTTCTCGTGTTTTTTGAGG
ATTTTGCCTCTTTCGGTCGGTCACTCTTGGACGCACGGGTGTACTCCCCG
GAAGGTAAAAAGCATTCGGGCACACCCGGCATGAATGATTTTACGGGGCC
TCTTCATCTCGTGGGTGTTGGAGCAAGGCGAACGTTGGGGTGTGGCTGGT
TTTGGTTCCGGAGTCCACCTTCGCTTGCAAATCGATGCGTTCGTCTTGGT
TGGGG
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Coding sequence (CDS) from alignment at chr_00:887584..889938-

>Ec-00_000650.2 ID=Ec-00_000650.2|Name=Ec-00_000650.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=318bp|location=Sequence derived from alignment at chr_00:887584..889938- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTTGAAACTGCTGCTGTTTCATTGCAGCCTCTGCCGGCGCTCGTCGCC
GCTTTGTGAGGCAGGGAGGCAGGGATACGAGCCCGTCGGCGTGAGTTTTC
TCGTGTTTTTTGAGGATTTTGCCTCTTTCGGTCGGTCACTCTTGGACGCA
CGGGTGTACTCCCCGGAAGGTAAAAAGCATTCGGGCACACCCGGCATGAA
TGATTTTACGGGGCCTCTTCATCTCGTGGGTGTTGGAGCAAGGCGAACGT
TGGGGTGTGGCTGGTTTTGGTTCCGGAGTCCACCTTCGCTTGCAAATCGA
TGCGTTCGTCTTGGTTGG
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Synonyms
The feature 'Ec-00_000650.2' has the following synonyms
Synonym
Esi1151_0001
Esi_1151_0001