Ec-00_000640.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000640.1
Unique NameEc-00_000640.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length224
Homology
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BLAST of Ec-00_000640.1 vs. uniprot
Match: D7FHW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHW1_ECTSI)

HSP 1 Score: 452 bits (1162), Expect = 9.590e-161
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1 
Query:    1 MNDVDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTDDISFRESKPYVGVMKDSSGYLLCQIYPDEREVQVSERMTAEAVRVAIEEAGVAEPVFDQGTGLAFLPDHTEPLTGFPSSAFPGQILARVARLLELAESDLMHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHNLCKQLASPEQD 669
            MNDVDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTDDISFRESKPYVGVMKDSSGYLLCQIYPDEREVQVSERMTAEAVRVAIEEAGVAEPVFDQGTGLAFLPDHTEPLTGFPSSAFPGQILARVARLLELAESDLMHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHNLCKQLASPEQD
Sbjct:    1 MNDVDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTDDISFRESKPYVGVMKDSSGYLLCQIYPDEREVQVSERMTAEAVRVAIEEAGVAEPVFDQGTGLAFLPDHTEPLTGFPSSAFPGQILARVARLLELAESDLMHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHNLCKQLASPEQD 223
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BLAST of Ec-00_000640.1 vs. uniprot
Match: A0A6H5K8J3_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8J3_9PHAE)

HSP 1 Score: 220 bits (560), Expect = 1.010e-62
Identity = 116/144 (80.56%), Postives = 117/144 (81.25%), Query Frame = 1 
Query:  235 MTAEAVRVAIEEAGVAEPVFDQGTGLAFLPDHTEPLTGFPSSAFPGQILARVARLLELAESDLMHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHNLCKQLASPEQ 666
            MTAEAVRVAIEEAGVAEPVFDQ                         ILARVARLLEL ESDL HFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHNLC+QLASPEQ
Sbjct:    1 MTAEAVRVAIEEAGVAEPVFDQ-------------------------ILARVARLLELTESDLKHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHNLCRQLASPEQ 119
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BLAST of Ec-00_000640.1 vs. uniprot
Match: A0A0G4EAV3_VITBC (DNA_MISMATCH_REPAIR_2 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EAV3_VITBC)

HSP 1 Score: 202 bits (515), Expect = 2.430e-56
Identity = 103/221 (46.61%), Postives = 151/221 (68.33%), Query Frame = 1 
Query:    1 MNDVDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTDDISFRESKPYVGVMKDSSGYLLCQIYPDEREVQVSERMTAEAVRVAIEEAGVAEPVFDQGTG--LAFLPDHTEPLTGFPSSA-FPGQILARVARLLELAESDLMHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHNLCKQLA 654
            ++D DA+RGP +K+ IK R L+Q++SPGS  YLY+ CLR DD+ +RES+PYV +M  +SGY +C+I+ +E+ V+V++R+T EA RV +E AG  EP++ Q     L FLPD+     G P+++ F   +L  V + L++  ++   F+ VT + E RPRP+Y ST  QIGL+K  ++PDLV  LLP  + A  +RFLR+W+L PP YRLADS  +LC  L+
Sbjct:  172 LSDADAERGPPSKR-IKRRVLAQIVSPGSSTYLYDLCLRADDVGYRESRPYVALMGTASGYSMCEIFIEEKFVRVADRLTQEAARVKVETAGAVEPIYMQDVSELLPFLPDYRITFKGHPTASHFHTAVLRDVCKNLQINPAE---FQVVTGTDEDRPRPLYTSTVTQIGLIKTSSIPDLVLSLLPDNHAAHSNRFLRRWILSPPPYRLADSMRDLCTALS 388
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BLAST of Ec-00_000640.1 vs. uniprot
Match: A0A836CI19_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI19_9STRA)

HSP 1 Score: 166 bits (420), Expect = 1.390e-43
Identity = 111/292 (38.01%), Postives = 137/292 (46.92%), Query Frame = 1 
Query:    1 MNDVDAQRGPSAKKGIKE--------------RALSQVLSPGSPNYLYEGCLRTDDISFRESKPYVGVMKDSSGYLL---------------------------------------CQIYPDEREVQVSERMTAEAVRVAIEEAGVAEPVFDQGTGLAFLPDHTEPLTGFP-----------------SSAFPGQILARVARLLELAESDLMHFRTVTRSPE----GRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHNLCKQLA 654
            +ND DA         IKE              R L+QV++PGSP Y Y+ CLRTDD+ F E +PYVGV + + G+ +                                        ++Y D R  +VSERMT EA+R A+E  G AEP+      L  + D   P  G                      F   +L RV  +LELA  +   F TV RS      GRPRPVY STALQIGLL N NVPDL+P LLP GYP  C RFLR+WLL PP + LAD+   LC+  A
Sbjct:  440 LNDADALGDGGRSGRIKEXXXXXXXXXXXGPRRVLAQVVTPGSPTYYYDACLRTDDVEFAECRPYVGVARGAGGFTMVXXXXXXXXXXXXXXXXXXXXVKSRXXXXXXXXXXXXXXAEVYADARSARVSERMTEEALRAALEAGGAAEPL------LIGVGDEKPPQGGTAXXXXXXXXXGRVRYFGGEEGFVKAVLGRVGSILELAGGESGAF-TVARSQRAREAGRPRPVYLSTALQIGLLPNPNVPDLIPRLLPRGYPGHCARFLRRWLLSPPPHALADAMAELCRACA 724
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BLAST of Ec-00_000640.1 vs. uniprot
Match: A0A4D9CWC2_9STRA (DNA mismatch repair protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWC2_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.360e-36
Identity = 92/235 (39.15%), Postives = 140/235 (59.57%), Query Frame = 1 
Query:    1 MNDVDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTDDISFRESKPYVGVMK-DSSGYLLCQIYPDEREVQVSERMTAEAVRVAIEEAGVAEPVFDQGT--GL--AFLP-----DHTEPLTGFPSSAFPGQILARVARLLEL-AESDLMHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPA-GYPAA---CHRFLRKWLLLPPSYRLADSAHNLCKQLASP 660
            ++D+D+    ++K  +K R LSQ++SPG+  YLY+ CLR DD+ + E++P++G++   S+GY L +++ D +  +++E +T E V++ +   G+AEP++ Q    GL    LP     +  E      S +F   ++  + R LE+ A +D +H R V      RPRP+  +TALQIGL+ N  VPDLVP LLPA   P       RFLR+WLL PP Y LAD+   LC+ LA P
Sbjct:  249 ISDLDSASPRTSK--LKSRLLSQIVSPGASTYLYDCCLRPDDVEYPENRPFLGLLNLPSNGYTLVEVHVDAQTARITEGLTEEGVKMMLLAGGMAEPLYTQAVERGLLRVLLPGGGEVERRELFGHVDSRSFYQALVQALGRDLEIEALADQVHVR-VAPPLHSRPRPIPLATALQIGLVANSAVPDLVPHLLPAHALPLLRVHSSRFLRRWLLTPPPYHLADAMQALCRHLARP 480
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BLAST of Ec-00_000640.1 vs. uniprot
Match: A0A7S3WA61_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WA61_EMIHU)

HSP 1 Score: 125 bits (313), Expect = 8.290e-30
Identity = 81/215 (37.67%), Postives = 109/215 (50.70%), Query Frame = 1 
Query:   40 KGIKERALSQVLSPGSPNYLYEGCLRTDDISFRESKPYVGVMKDSSGYLLCQIYPDEREVQVSERMTAEAVRVAIEEAGVAEPVFDQGTGLA------FLPDHTEPLTGFPSSAFPGQILARVARLLELAESDLMHFRTVTRSPEGR---PRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHNLCKQLAS 657
            KGIKER LSQVLS GSP YL++ CL    I +   +PY  + K + GY L  ++ DER   V  R++  A+R  +     A P+   G+  A      +LP     L    +S      +A VA  ++L   D   F     SP GR   PRPVY +TA Q+GLL    +PDL   LLP   PA     LR+ LLLPP   +AD+  + C+ L +
Sbjct:  133 KGIKERRLSQVLSAGSPTYLHDRCLSPHPIDYSAPRPYAALAKAADGYTLVHVFVDERTYHVHRRLSLPALRSLLAARPHAPPLLLGGSADAASSAASWLPAERRRLAVKSASRLAAAAVAHVAAEVQL---DAATFSAAPSSPAGRHAPPRPVYVTTASQVGLLPAAGIPDLPRALLPRTAPAESVELLRRLLLLPPRPAIADALRSACEALGA 344
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BLAST of Ec-00_000640.1 vs. uniprot
Match: A9SXU2_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SXU2_PHYPA)

HSP 1 Score: 96.3 bits (238), Expect = 2.610e-19
Identity = 73/232 (31.47%), Postives = 112/232 (48.28%), Query Frame = 1 
Query:   10 VDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTD-DISFRESKPYVGVMKDSSGYLLCQIYPDEREVQVSERMTAEAVRVAI----------------EEAGVAEPVFDQGTGLAFLPDHTEPLTGFPSSAFPGQILARVARLLELAESDLMHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHNLCKQLA 654
            V+  +GP AK  +KER ++    PGSP Y+Y G +  D D+ F E  P +G+ +   GY L  +        V + +T EAV   +                + AG+A+  + +G GL +     +    +      G ++++V  L +L   D   FR +   P  RPRP+Y STA QIG+L    VP L+  LLP    + C  ++R  LL PP +R+AD     C++LA
Sbjct:  254 VEEVQGPQAKGHLKERFVAGHAHPGSP-YVY-GLVSADVDLEFPEPVPVMGISRSRRGYCLISVLEMMHSFSVEDALTEEAVVAKLRSRQCQQLFMHRSLRRDTAGIAQ--WGEG-GLLYGECQKKQQEWYDDDPVDG-LISKVRELFDL--DDDQEFREIVVPPGERPRPLYVSTASQIGILPTAGVPSLLMVLLPPEANSLCTSYVRNLLLHPPPHRVADCIQAACRKLA 477
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BLAST of Ec-00_000640.1 vs. uniprot
Match: A0A1L7NZY2_PHYPA (MutS homolog 1B n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A1L7NZY2_PHYPA)

HSP 1 Score: 96.3 bits (238), Expect = 2.900e-19
Identity = 73/232 (31.47%), Postives = 112/232 (48.28%), Query Frame = 1 
Query:   10 VDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTD-DISFRESKPYVGVMKDSSGYLLCQIYPDEREVQVSERMTAEAVRVAI----------------EEAGVAEPVFDQGTGLAFLPDHTEPLTGFPSSAFPGQILARVARLLELAESDLMHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHNLCKQLA 654
            V+  +GP AK  +KER ++    PGSP Y+Y G +  D D+ F E  P +G+ +   GY L  +        V + +T EAV   +                + AG+A+  + +G GL +     +    +      G ++++V  L +L   D   FR +   P  RPRP+Y STA QIG+L    VP L+  LLP    + C  ++R  LL PP +R+AD     C++LA
Sbjct:  254 VEEVQGPQAKGHLKERFVAGHAHPGSP-YVY-GLVSADVDLEFPEPVPVMGISRSRRGYCLISVLEMMHSFSVEDALTEEAVVAKLRSRQCQQLFMHRSLRRDTAGIAQ--WGEG-GLLYGECQKKQQEWYDDDPVDG-LISKVRELFDL--DDDQEFREIVVPPGERPRPLYVSTASQIGILPTAGVPSLLMVLLPPEANSLCTSYVRNLLLHPPPHRVADCIQAACRKLA 477
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BLAST of Ec-00_000640.1 vs. uniprot
Match: A0A5J4XCK7_9CHLO (Mitochondrial-targeted muts 1 (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XCK7_9CHLO)

HSP 1 Score: 83.2 bits (204), Expect = 2.830e-15
Identity = 68/231 (29.44%), Postives = 107/231 (46.32%), Query Frame = 1 
Query:   34 AKKGIKERALSQVLSPGSPNYLYEGCL-RTDDISFRESKPYVGVMKDSSGYLLCQIYPDEREVQVSERMTAEAVRVAIEEAGVAEPVF---------DQGTGLAFLPDHTEPLTGFPSSAFPGQI--------LARVARLLELAESDL-----MHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAAC-HRFLRKWLLLPPSYRLADSAHNLCKQLA 654
            A+  +K R +  V++P  P YLY     R+D   F+ES P +G+     GY + ++  D    QV+E +T +AV   + + G+  P++         D+    + +    E      S  F  Q+           V  LL L + +L     ++F  VT +   RP+PVY STA Q+G+ K   V  L+  LLP    +    R+LR+ LLLPP   +A S    C+ L+
Sbjct:   14 ARTKMKNRFIGGVVTPAQPQYLYSMMEDRSDAHDFQESPPILGIAAAVGGYKVMEVDVDMLTCQVTEGLTEDAVSARLHQGGLVPPLYLHSSIHARQDRQISESTVEAEWEQRV---SQLFRSQVGLVKKYSDAEAVPGLLNLVKMELGLSTGVNFTQVTTAATDRPKPVYKSTACQLGIHKTAGVWPLLDSLLPPTPTSLLVRRWLRRLLLLPPPTEVAKSIRTACQFLS 241
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BLAST of Ec-00_000640.1 vs. uniprot
Match: A0A8J9WUI7_9CHLO (Probable DNA mismatch repair protein MutS at C-terminar half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WUI7_9CHLO)

HSP 1 Score: 83.2 bits (204), Expect = 9.350e-15
Identity = 56/219 (25.57%), Postives = 103/219 (47.03%), Query Frame = 1 
Query:   49 KERALSQVLSPGSPNYLYEGCLRTDDISFRESKPYVGVMKDSSGYLLCQIYPDEREVQVSERMTAEAVRVAIEEAGVAEPVFDQGTGLAFLPDHTEPLTGFPSSAFPGQIL--------------ARVAR--LLELAESDLM-----HFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHNLC 642
            K+R ++ +++P  P+YLY       D S  ++ P + +   + GY + ++ P+     ++E +T +AV   + + G++ P++   +    +        G   S +  +++              AR A   LL L   +L       F  +   P  RP+P+Y STA Q+GL K K +P+L+  +LP   P    R++++ LLLPPS  +A +    C
Sbjct:  231 KQRFVAGIVTPAQPHYLYGLLDANMDPSLGDTPPILAIATSTGGYKVMEVQPEMMTCAITEGLTEDAVSARLHQGGLSPPLYIHSSVQGSIQGRLS--EGSVESEWEQRVVQIFRSQVGVVKRYNARDAEEGLLALLRHELCLDADAPFARIAAKPGERPKPLYHSTASQLGLHKTKGIPNLLDFVLPRNAPQGARRWMQRLLLLPPSPEVAAALWKAC 447
The following BLAST results are available for this feature:
BLAST of Ec-00_000640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHW1_ECTSI9.590e-161100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8J3_9PHAE1.010e-6280.56DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A0G4EAV3_VITBC2.430e-5646.61DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A836CI19_9STRA1.390e-4338.01AP2/ERF domain-containing protein n=1 Tax=Tribonem... [more]
A0A4D9CWC2_9STRA2.360e-3639.15DNA mismatch repair protein n=2 Tax=Monodopsidacea... [more]
A0A7S3WA61_EMIHU8.290e-3037.67Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A9SXU2_PHYPA2.610e-1931.47Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A1L7NZY2_PHYPA2.900e-1931.47MutS homolog 1B n=1 Tax=Physcomitrium patens TaxID... [more]
A0A5J4XCK7_9CHLO2.830e-1529.44Mitochondrial-targeted muts 1 (Fragment) n=1 Tax=T... [more]
A0A8J9WUI7_9CHLO9.350e-1525.57Probable DNA mismatch repair protein MutS at C-ter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:873770..877353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score454.1
Seed ortholog evalue3.7e-125
Seed eggNOG ortholog2880.D7FHW1
Preferred nameMSH6
Length672
KEGG koko:K08737
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
KEGG ModuleM00295
Hectar predicted targeting categoryother localisation
Gene idEc-00_000640.1
GOsGO:0000003,GO:0000166,GO:0000217,GO:0000400,GO:0000403,GO:0000404,GO:0000406,GO:0000710,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0030554,GO:0030983,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032135,GO:0032137,GO:0032300,GO:0032301,GO:0032302,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036297,GO:0042623,GO:0043111,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043570,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045005,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051716,GO:0060255,GO:0061982,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1903046,GO:1990391,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.mismatched DNA binding
EggNOG OGsCOG0249@1,KOG0217@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000640Ec-00_000640Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 873770..877353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000640.1Ec-00_000640.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 873770..877353 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000640.1.7Ec-00_000640.1.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 873770..873775 -
Ec-00_000640.1.6Ec-00_000640.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 873816..873986 -
Ec-00_000640.1.5Ec-00_000640.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 874526..874645 -
Ec-00_000640.1.4Ec-00_000640.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 875028..875102 -
Ec-00_000640.1.3Ec-00_000640.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 875724..875828 -
Ec-00_000640.1.2Ec-00_000640.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 876685..876810 -
Ec-00_000640.1.1Ec-00_000640.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 877285..877353 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000640.1CDS:Ec-00_000640.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 873770..873775 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000640.1 ID=Ec-00_000640.1|Name=Ec-00_000640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=224bp
MNDVDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTDDISFRESKP
YVGVMKDSSGYLLCQIYPDEREVQVSERMTAEAVRVAIEEAGVAEPVFDQ
GTGLAFLPDHTEPLTGFPSSAFPGQILARVARLLELAESDLMHFRTVTRS
PEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLL
PPSYRLADSAHNLCKQLASPEQD*
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spliced messenger RNA

>Ec-00_000640.1 ID=Ec-00_000640.1|Name=Ec-00_000640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=672bp|location=Sequence derived from alignment at chr_00:873770..877353- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGACGTCGACGCGCAGAGAGGACCGAGCGCTAAGAAGGGGATCAA
GGAGAGGGCTCTGTCGCAGGTCTTGTCGCCCGGCAGCCCGAACTATCTCT
ATGAGGGCTGCCTGAGGACCGACGACATCAGCTTCAGAGAGTCGAAGCCG
TACGTCGGGGTGATGAAGGACAGCTCCGGTTACCTCCTCTGCCAGATCTA
CCCAGACGAGAGGGAGGTGCAAGTGTCGGAGAGAATGACGGCAGAGGCGG
TGAGGGTCGCCATCGAGGAGGCCGGCGTCGCCGAGCCGGTGTTCGATCAG
GGCACGGGTCTGGCATTCCTGCCGGACCACACGGAGCCATTAACCGGGTT
CCCATCATCGGCGTTTCCGGGACAGATTCTTGCACGCGTGGCTCGGCTGC
TGGAACTCGCGGAGTCGGACCTGATGCACTTCCGCACGGTCACTCGATCC
CCGGAGGGGCGTCCCCGCCCTGTCTACCCGTCTACCGCCCTGCAGATTGG
CCTCCTCAAGAACAAGAACGTGCCAGACCTCGTCCCGTGCCTGCTCCCCG
CCGGCTACCCGGCCGCCTGCCACCGCTTCCTGCGGAAGTGGCTCCTGCTG
CCCCCGTCCTACCGCCTCGCCGACAGCGCGCACAACCTCTGCAAGCAGCT
CGCATCGCCTGAGCAGGATTAG
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protein sequence of Ec-00_000640.1

>Ec-00_000640.1 ID=Ec-00_000640.1|Name=Ec-00_000640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=224bp
MNDVDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTDDISFRESKP
YVGVMKDSSGYLLCQIYPDEREVQVSERMTAEAVRVAIEEAGVAEPVFDQ
GTGLAFLPDHTEPLTGFPSSAFPGQILARVARLLELAESDLMHFRTVTRS
PEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLL
PPSYRLADSAHNLCKQLASPEQD*
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mRNA from alignment at chr_00:873770..877353-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000640.1 ID=Ec-00_000640.1|Name=Ec-00_000640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3584bp|location=Sequence derived from alignment at chr_00:873770..877353- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAACGACGTCGACGCGCAGAGAGGACCGAGCGCTAAGAAGGGGATCAA
GGAGAGGGCTCTGTCGCAGGTGACCACAAGACAAGAAACGAGTGTTGGGC
TTTGTCCCCTCGTCCCGTGGTTGCTGTGTGCTTGTGCTCATAGCTTTGTT
GTACTTTTACGGTGCTGTCTTGACGATGCGTGTGTGTTGTTTTTGCGATG
CCGAAACGGGTGTCCCGGGCAACGGTTTGGTCGCACATGTAGCACGTAGT
GAGGCCAAACACTGGTTGTTGTTGCGGTTGCCTGGTTCTTTAATTAGCAT
CGACCGCACTGACGGGCTTTTGTTGCTTCCGGGGCAACGCATAAGACGCG
GCACGCGTTCAAGTCCACTGGCTGTGCATCTGTGTATTCTGCTGCGCCTG
TGTTGGCGCTGTCCAGCTTGTTGCGGTACAGCTACCATGTTTTAGTATTT
AGACACCCCGCCTGCGTTCATTTTTCGTGAGTATATGTACATACCGACAT
TTGCACGCCTCTGCTGTATGCCTCGTACGTTTGGTTCCAAAAGGTCTTGT
CGCCCGGCAGCCCGAACTATCTCTATGAGGGCTGCCTGAGGACCGACGAC
ATCAGCTTCAGAGAGTCGAAGCCGTACGTCGGGGTGATGAAGGACAGCTC
CGGTTACCTCCTCTGCCAGGCGAGCTGCTGTCTCATCTGTCTCATTCATT
CCTTGTGCTGTTGTGGTGCCCGTGTGGTCGATGGTCTAACGGCTAAGGCA
TGCGAAACATGAGCTTCCCCCCCCCCCCCCCCAAAATAACGTCAAGAGTT
GCAGCCCAAAGACCGGATGCCTCCCTCCCCGGGCAGAATGGGTTTTTGGT
TTGGTAGTCCTGTCGCTGAATCGGAGTCCTCAACGCTAACTAGTATCGAC
GACGTCTCGGGAAGGTCTGTGATTATTACGCCTTTGTTTGCGGCTCCGAA
ATGTGCGTCCCGTACGTTAGCTCTTGGCTGCAACCTTGCAGGCGCTTGGA
TACAATCTTGCGGCCGTGTCTACTGGCAAGTCCCAACAAGCTTTTTGTTT
GACATTTTTCTTAGTAAAGCACAACTTGTTTGTGTGATTTGCCTTAGATT
GGACGCCGCACTACTGGCTCCCGGCAGGTGTAAGCCGTGTTGAACCATAG
TGCCAACACAACCACAGATCGTACTCGCCGTGTCGTACCTACCTTCCCAT
GGTTGTCTCATGCACCATGTTGTGCACCATCCATCCACAACCGTGGTGAC
CTCTTTCAGCGGTAGTGTTACTAGGTGACAAGTCAGCGTGGATTCCATCG
AAAAGTGTTCGTCATGCCCTTAGGATTCATTTTATTTGAGTATACACATT
TTCTAAAATAGCGTAAATTAGCCTGTGGCCACGGGAATCGATCGCGTCAA
GTGGTAGACTAGTACGGACAGAAGGAGGTACTGGACACAGAGATCGGAAG
GGTTTAAGTTGTGAAGACAACAACAACAGTAAGTATGAGCCCCTTGCTGT
CACGAATCGGATTGTTTTGATCTAGATCTACCCAGACGAGAGGGAGGTGC
AAGTGTCGGAGAGAATGACGGCAGAGGCGGTGAGGGTCGCCATCGAGGAG
GCCGGCGTCGCCGAGCCGGTGTTCGATCAGGTAGGTGCACTGCCGTGGAC
ACGACTGCCTCATGCGTCTGTTGTCCGCTTGCCTAGTCTCTGCTGACAGA
TAAATGTCCTCCTTATGTCTGGGTTAACCATTCCCAAGCATCAATTCAGT
AGAAGTATTTGCGGGAAATCTACGTGTGTGGGGTGTGGGTGTGCTCAATT
GGTTTAGATAGCAGTAGCATCGACTGCACGAACCGGCTAGCCAATGGAGA
GCGTTGTGTGGGTGTTTTTTTTGTTCCGTTTTCCCCTGCTTCCCCTGCTT
TTCCCCGGGTTACCCTCAAGACGTTGTTCTGTATTGTCAATTGCGGTTGT
ACGTAGCAAAGACAAGACCTTAGGGCCAAGCGTTAGGTGTAGCCTTTAAA
GTTATTCTTCCATCGTTGTTGATCCCTTTAATCTCTTGGGCAGAACAATC
TCGCAAATGTTAGTTGTGTTCGATGCGCTTGCTGTCTTTTGTCATGTTTT
GTTATGTTACACTGGGTTTATTGTGAACGGAAGAATTCGGAACATCTCCC
AGATCTACGTATGTACTTGGGGTTCTTGTTGCCCCCCCCTCAATTATATC
TTAGTACTGCTGTGCTGTTCGCCGACCCCCTATCTATGCATGCCATGTCA
GGGCACGGGTCTGGCATTCCTGCCGGACCACACGGAGCCATTAACCGGGT
TCCCATCATCGGCGTTTCCGGGACAGGTGTGACCAGTTTGACCAATCACC
GACAACGCACGAACAGACAAGACAATCGGGGTGCTTTAGGCTGTGCCGAG
GGCGTACATTCTGTAGATTAGCTTGAATTAATTCATCGGGTGCCCATCTA
GCTCAGTCTCTGACAAGAACAAGACCTCCACACATCCCTCTTGCCTGTGT
GCGGACTTTGTACTACAATGTACCACAGAGAAAAACGTGTGTTGTTAGCT
GGGACGGCGATATTTTAGATTTAACTGGGACGACCGCAGAGAGATGTGTG
CGGTTGTTTCCGGACGACGTTTTTCGTTTCCTGCATTTGTGATATTCTGT
CTCAGTTTTTTCTGTCTCTCCTCTTTTTCTTCCAAATACTCTTACGTAAT
ATGAGCAGATTCTTGCACGCGTGGCTCGGCTGCTGGAACTCGCGGAGTCG
GACCTGATGCACTTCCGCACGGTCACTCGATCCCCGGAGGGGCGTCCCCG
CCCTGTCTACCCGTCTACCGCCCTGCAGGTACTAGGTGATCCGTGCGACT
GGCATGGAGCAACATGTTTGTGCCTAATATAGCAAGAGTGCAGTGTTTTC
GACGCGTGCTGCTGCTGTGTTTGTTTTGAGCCTATTCATGCACGTATGCT
GTATGTATCATTCACTTTTTTTTTTTCGGTGGCTTGCTGTTTCGTGTGAG
TCAGCTTTTTGGTGTGACAGCAGTGTAAGTTGGTGTACTTGTCCCTGTGA
CCCCCCGTTTCCGTGTTGGAAACATCACACAACAAGAAGAACAAGAACAA
GGTCAGCTCTTGGCTGTGACAGCGGTGGAAGTTTGCAGCTCTTGGCTGTG
ACAGCGGTGGAAGTTTGCGCCCTTGACCCTGTGACCCCCCGTTTCCGTTG
GCAACCTCACGACGTAAATAACAAGAAGGTCAGTTCTTTGCTGTAACCAC
CAAGAACTCGCGCCCTTGTCTGTGTGTGTCTCTCCGTTTTCCGTTGGAAA
CATTACACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
GACGACGACGACGACAGATTGGCCTCCTCAAGAACAAGAACGTGCCAGAC
CTCGTCCCGTGCCTGCTCCCCGCCGGCTACCCGGCCGCCTGCCACCGCTT
CCTGCGGAAGTGGCTCCTGCTGCCCCCGTCCTACCGCCTCGCCGACAGCG
CGCACAACCTCTGCAAGCAGCTCGCATCGCCTGAGCAGGTGGGTGTGAGA
GGATTAGGGGGGTTAGGGGGATTAGGAGGATTAG
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Coding sequence (CDS) from alignment at chr_00:873770..877353-

>Ec-00_000640.1 ID=Ec-00_000640.1|Name=Ec-00_000640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=672bp|location=Sequence derived from alignment at chr_00:873770..877353- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAACGACGTCGACGCGCAGAGAGGACCGAGCGCTAAGAAGGGGATCAA
GGAGAGGGCTCTGTCGCAGGTCTTGTCGCCCGGCAGCCCGAACTATCTCT
ATGAGGGCTGCCTGAGGACCGACGACATCAGCTTCAGAGAGTCGAAGCCG
TACGTCGGGGTGATGAAGGACAGCTCCGGTTACCTCCTCTGCCAGATCTA
CCCAGACGAGAGGGAGGTGCAAGTGTCGGAGAGAATGACGGCAGAGGCGG
TGAGGGTCGCCATCGAGGAGGCCGGCGTCGCCGAGCCGGTGTTCGATCAG
GGCACGGGTCTGGCATTCCTGCCGGACCACACGGAGCCATTAACCGGGTT
CCCATCATCGGCGTTTCCGGGACAGATTCTTGCACGCGTGGCTCGGCTGC
TGGAACTCGCGGAGTCGGACCTGATGCACTTCCGCACGGTCACTCGATCC
CCGGAGGGGCGTCCCCGCCCTGTCTACCCGTCTACCGCCCTGCAGATTGG
CCTCCTCAAGAACAAGAACGTGCCAGACCTCGTCCCGTGCCTGCTCCCCG
CCGGCTACCCGGCCGCCTGCCACCGCTTCCTGCGGAAGTGGCTCCTGCTG
CCCCCGTCCTACCGCCTCGCCGACAGCGCGCACAACCTCTGCAAGCAGCT
CGCATCGCCTGAGCAGGATTAG
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Synonyms
The feature 'Ec-00_000640.1' has the following synonyms
Synonym
Esi1148_0001
Esi_1148_0001