Ec-00_000625.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000625.1
Unique NameEc-00_000625.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length208
Homology
The following BLAST results are available for this feature:
BLAST of Ec-00_000625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:865476..867831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length624
Hectar predicted targeting categoryother localisation
Gene idEc-00_000625.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000625Ec-00_000625Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 865476..867831 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000625.1.1Ec-00_000625.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 865476..865573 +
Ec-00_000625.1.2Ec-00_000625.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 866095..866236 +
Ec-00_000625.1.3Ec-00_000625.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 866460..866641 +
Ec-00_000625.1.4Ec-00_000625.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 867630..867831 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000625.1CDS:Ec-00_000625.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 865476..865573 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000625.1Ec-00_000625.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 865476..867831 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000625.1 ID=Ec-00_000625.1|Name=Ec-00_000625.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=208bp
MDLMLTQTAGPKMAMMSYWRASNSPVKWKRTRRPRSSSGTASWTRSWEGH
RADLPRQNVTLRDVLRPKGTTSINKLFVERLLRPLISSALSSILSTQAPD
LDVPDDEHDLARAQADAMERTARWSVLMQGGGSKNQSFTNEMWGTFLKMW
TGRNRPMNKLTTMNEDDIQSADLVSFCRPYLKRPGSGGEPATTPSAPAAQ
AQNSSGV*
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spliced messenger RNA

>Ec-00_000625.1 ID=Ec-00_000625.1|Name=Ec-00_000625.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=624bp|location=Sequence derived from alignment at chr_00:865476..867831+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCTGATGCTCACTCAGACTGCAGGCCCGAAGATGGCGATGATGTC
ATACTGGCGAGCATCAAACTCGCCGGTCAAATGGAAGAGAACGCGCCGGC
CACGGTCCTCCTCAGGGACAGCATCCTGGACAAGGTCCTGGGAGGGGCAC
CGGGCCGACCTTCCGCGCCAGAATGTTACGTTGCGCGATGTGCTCAGGCC
GAAGGGGACGACATCTATAAACAAGCTCTTCGTCGAAAGGTTGTTGCGGC
CTCTTATCAGTTCGGCCCTGTCGTCGATCTTGTCTACACAAGCGCCAGAC
CTTGATGTGCCTGATGACGAGCATGATCTGGCGAGGGCACAGGCTGACGC
AATGGAGCGAACGGCAAGATGGAGTGTGCTGATGCAGGGCGGCGGCTCCA
AGAACCAGAGCTTCACCAACGAAATGTGGGGGACTTTCCTCAAGATGTGG
ACGGGGAGGAACCGTCCGATGAATAAGCTCACCACCATGAACGAAGACGA
CATCCAATCGGCCGACCTCGTCTCCTTTTGCCGCCCGTACCTCAAGCGCC
CGGGTTCTGGTGGCGAGCCGGCTACTACGCCATCAGCTCCCGCAGCGCAA
GCTCAGAATAGCTCCGGCGTGTAG
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protein sequence of Ec-00_000625.1

>Ec-00_000625.1 ID=Ec-00_000625.1|Name=Ec-00_000625.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=208bp
MDLMLTQTAGPKMAMMSYWRASNSPVKWKRTRRPRSSSGTASWTRSWEGH
RADLPRQNVTLRDVLRPKGTTSINKLFVERLLRPLISSALSSILSTQAPD
LDVPDDEHDLARAQADAMERTARWSVLMQGGGSKNQSFTNEMWGTFLKMW
TGRNRPMNKLTTMNEDDIQSADLVSFCRPYLKRPGSGGEPATTPSAPAAQ
AQNSSGV*
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mRNA from alignment at chr_00:865476..867831+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000625.1 ID=Ec-00_000625.1|Name=Ec-00_000625.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2356bp|location=Sequence derived from alignment at chr_00:865476..867831+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACCTGATGCTCACTCAGACTGCAGGCCCGAAGATGGCGATGATGTC
ATACTGGCGAGCATCAAACTCGCCGGTCAAATGGAAGAGAACGCGCCGGT
GAGCAGACAACGAGATATGCAGGCAATTTCGGCCACGGGATCACGTCACA
GCAGTGATGCGTGGTATATCGTAAATTTATGGCGGCATTTGGCCAATGTG
ACGTTAATATATATATGGGGGTTCGTGTTTCAGTCGTTTTATCTATCCGC
AAATAATCGTCCTGGTATACGTACATGACCCTTACGGGACAAGTGACACC
TCCGGCGCTGGTATTTTTTTTTCACATTGTAGTGCCGTGTGCGTGAAGCT
CGTGTCGATATACAACACGAGTAATATCGTACTGGACTGAACGTGGCTAC
ATGTTTTTGGCGGATTGAAAGTATATATTTATTGCTAGCGTAACCGTCTG
CATTTGTCAAGGGCCTCTCTCTATATATGCCATTGTTCCGCGTGGTCTTG
TGTCATGGGCGCGCGCGCACCGCCGCGCGTACCAGCTGCCGTTGTTTACC
TATACCAGACCAGTCACTCACATGCGTTTGGGGCACGCCACGTCAAACTA
TTTTTCGCGAATCACGCAGGCCACGGTCCTCCTCAGGGACAGCATCCTGG
ACAAGGTCCTGGGAGGGGCACCGGGCCGACCTTCCGCGCCAGAATGTTAC
GTTGCGCGATGTGCTCAGGCCGAAGGGGACGACATCTATAAACAAGCTCT
TCGTCGAAAGGGTAACCACAACTAATGGAATGCCACCCTCAGCCGCTAAA
CGAAAACTATACTGTAACTGTGTTTCTTTCCTCGATCGCGCCGTCACCAA
AATCCAACAGTCATCGTGCATGTCTCGTAGTTTTTGTTTCCTGCGCCCAT
ACCACCTCTTTCACACCGGTCATATACCTCACGGAGATCGTCTCTCATTC
ATTGCCCTTTCTTCTTCCCTTGTTCCTGCGACAGTTGTTGCGGCCTCTTA
TCAGTTCGGCCCTGTCGTCGATCTTGTCTACACAAGCGCCAGACCTTGAT
GTGCCTGATGACGAGCATGATCTGGCGAGGGCACAGGCTGACGCAATGGA
GCGAACGGCAAGATGGAGTGTGCTGATGCAGGGCGGCGGCTCCAAGAACC
AGAGCTTCACCAACGAGTGAGTTGTTTTGTTTGATTTGTTGTGCGTCTCG
GTCTTGTACTCTCGCACTCAAGCATTTGTGATTACACCGCTTTTGATTGG
AGCAGAATGTTGCAGATACTTTTCCTGCAACTTCATCGGGAACTATTGTC
AAATGACTTTTGGTGCACGATCGTTATGGGGCAGTTGGCTTTCTTCTCGG
GACTGTGGAATGCGGAGGCGTGCTCTTCTTTTTTTTTTTGTGCAACGGCG
GGAAGCGGGCACACCTCCATGCCACACCGTGAAGAAACCGGCCAGCGGGA
GAGGGTAGTTGTAAATTTTTCTCCACACTCACGACACCCCAAGGCATCCA
ACCTGCTACCAGAAAGATGCTGGGTAGAGCTAAATCCCTCGGAGCTGCAC
TGCTGTTGCTGTTGCTTCCTCCTTCGAATAGTTTTTTGCTGGGGCACCAA
ACCATGAGCACACAATTTCGGGGAACTTGAACCAACCGCTCTCTCGCGTA
GGTATTTTAGGGTCAACCAAAAAAACATTTTCCCGGCGCGGCGCACGATA
CCCCACGGTACCAAACCTTGGGCATGAAAGATGGAGCAGAGAGGTACCTC
CCGCCGAGTGTCCCTGCTATACTGCTGTTGCTTCCTCGTTCGGAAAGTTA
TCGGTCGAAAACCAAACCCACCCCGTGGCGGTAAAACTTTCCGGACTTGA
ACCCCTCGCGGCCGTTGACGTTCGTGCGTCAACACAAACTTTTTTTCCCG
GCGCATTTGGCACCTCACGGCGCCAAACCTTGGCATTGCCCAACAGCCCA
TGGCATTACCTCCTTCCGGATACCATTCATAAGGCACGTCGTTTAGTATT
CGTCGAGATATCGGTGACCACGGTGCCTTCCAATTGAAGCTGGAGAGGGG
GGTCAACGTGTGTGGTAAGGGATATAGGTGCATTTGTTGCGATGTAGAGT
GGTTCATTCCCGCTATTTCTACCCTTTTGCGTGCCCGCACTGGAAAAATT
ACAGAATGTGGGGGACTTTCCTCAAGATGTGGACGGGGAGGAACCGTCCG
ATGAATAAGCTCACCACCATGAACGAAGACGACATCCAATCGGCCGACCT
CGTCTCCTTTTGCCGCCCGTACCTCAAGCGCCCGGGTTCTGGTGGCGAGC
CGGCTACTACGCCATCAGCTCCCGCAGCGCAAGCTCAGAATAGCTCCGGC
GTGTAG
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Coding sequence (CDS) from alignment at chr_00:865476..867831+

>Ec-00_000625.1 ID=Ec-00_000625.1|Name=Ec-00_000625.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=624bp|location=Sequence derived from alignment at chr_00:865476..867831+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACCTGATGCTCACTCAGACTGCAGGCCCGAAGATGGCGATGATGTC
ATACTGGCGAGCATCAAACTCGCCGGTCAAATGGAAGAGAACGCGCCGGC
CACGGTCCTCCTCAGGGACAGCATCCTGGACAAGGTCCTGGGAGGGGCAC
CGGGCCGACCTTCCGCGCCAGAATGTTACGTTGCGCGATGTGCTCAGGCC
GAAGGGGACGACATCTATAAACAAGCTCTTCGTCGAAAGGTTGTTGCGGC
CTCTTATCAGTTCGGCCCTGTCGTCGATCTTGTCTACACAAGCGCCAGAC
CTTGATGTGCCTGATGACGAGCATGATCTGGCGAGGGCACAGGCTGACGC
AATGGAGCGAACGGCAAGATGGAGTGTGCTGATGCAGGGCGGCGGCTCCA
AGAACCAGAGCTTCACCAACGAAATGTGGGGGACTTTCCTCAAGATGTGG
ACGGGGAGGAACCGTCCGATGAATAAGCTCACCACCATGAACGAAGACGA
CATCCAATCGGCCGACCTCGTCTCCTTTTGCCGCCCGTACCTCAAGCGCC
CGGGTTCTGGTGGCGAGCCGGCTACTACGCCATCAGCTCCCGCAGCGCAA
GCTCAGAATAGCTCCGGCGTGTAG
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