Ec-00_000620.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000620.1
Unique NameEc-00_000620.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length70
Homology
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BLAST of Ec-00_000620.1 vs. uniprot
Match: D7FHV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV9_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 2.500e-44
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 MRAFCYLVELTAAPNHRELSNAYHRMGKAYQDLGSRIMALRWPCRQLMTENYHARRERMPTTSRGRQSI 207
            MRAFCYLVELTAAPNHRELSNAYHRMGKAYQDLGSRIMALRWPCRQLMTENYHARRERMPTTSRGRQSI
Sbjct:    1 MRAFCYLVELTAAPNHRELSNAYHRMGKAYQDLGSRIMALRWPCRQLMTENYHARRERMPTTSRGRQSI 69
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BLAST of Ec-00_000620.1 vs. uniprot
Match: A0A6H5JH17_9PHAE (Clu domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH17_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.610e-15
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 MRAFCYLVELTAAPNHRELSNAYHRMGKAYQDLGSRIMALR 123
            MRAFCYLVELTA PNH ELSNAYHRMG+AYQDLGS IMALR
Sbjct: 1248 MRAFCYLVELTAGPNHPELSNAYHRMGRAYQDLGSAIMALR 1288
The following BLAST results are available for this feature:
BLAST of Ec-00_000620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHV9_ECTSI2.500e-44100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JH17_9PHAE1.610e-1590.24Clu domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:861550..862535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue7.7e-13
Seed eggNOG ortholog2880.D7G8X4
Length210
KEGG koko:K03255
Hectar predicted targeting categoryother localisation
Gene idEc-00_000620.1
EggNOG free text desc.intracellular distribution of mitochondria
EggNOG OGsKOG1839@1,KOG1839@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000620Ec-00_000620Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 861550..862535 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000620.1.1Ec-00_000620.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 861550..861671 +
Ec-00_000620.1.2Ec-00_000620.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 862448..862535 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000620.1CDS:Ec-00_000620.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 861550..861671 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000620.1Ec-00_000620.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 861550..862535 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000620.1 ID=Ec-00_000620.1|Name=Ec-00_000620.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=70bp
MRAFCYLVELTAAPNHRELSNAYHRMGKAYQDLGSRIMALRWPCRQLMTE
NYHARRERMPTTSRGRQSI*
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spliced messenger RNA

>Ec-00_000620.1 ID=Ec-00_000620.1|Name=Ec-00_000620.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=210bp|location=Sequence derived from alignment at chr_00:861550..862535+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCTTTCTGCTACCTGGTGGAGCTCACGGCGGCCCCCAACCACCG
GGAGCTGTCCAACGCCTACCACCGCATGGGGAAGGCCTACCAGGACTTGG
GCAGCCGCATCATGGCTCTCAGGTGGCCATGCCGACAACTCATGACAGAA
AACTACCATGCCCGACGGGAGCGTATGCCTACAACGAGTCGTGGGCGTCA
AAGCATATAG
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protein sequence of Ec-00_000620.1

>Ec-00_000620.1 ID=Ec-00_000620.1|Name=Ec-00_000620.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=70bp
MRAFCYLVELTAAPNHRELSNAYHRMGKAYQDLGSRIMALRWPCRQLMTE
NYHARRERMPTTSRGRQSI*
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mRNA from alignment at chr_00:861550..862535+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000620.1 ID=Ec-00_000620.1|Name=Ec-00_000620.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=986bp|location=Sequence derived from alignment at chr_00:861550..862535+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGCGCTTTCTGCTACCTGGTGGAGCTCACGGCGGCCCCCAACCACCG
GGAGCTGTCCAACGCCTACCACCGCATGGGGAAGGCCTACCAGGACTTGG
GCAGCCGCATCATGGCTCTCAGGTAAAAGGACGTTGTACGCGTTGTATTC
GGTGCCCTACCTGCAGTACCTCAGCCTGACCTCTGGCTACCAGTTGTATA
CTGGAGGTGTGTCTGGCGTTCCTGCGGCGTCGTTCGTTTGGGAGGAGTTC
CGACATGTTGTGTGAATCTTTTTCCCATGCTGCAAAGCTAGACCGAACGT
TCAATCGATAAATACTCTTTTCGGGAAACGGAGACGACGGCGCTCTTAGA
AGGCCCGGGGGGTAGTGGCAAAATTGCGGTACTGTTCTCACAGCTGACGA
GCTGCCGAGTGTGATCATACAAGATCGTCTACGCGCATGCACGTAATAGC
TGTGTGACTCACGCACCATCACCACGCGCATGCCCGAAGGCCAACACTAA
AAGCACCGGCATCTGGATGTTGTTGATGACTTCACAACAAAAAACGTTCC
AGTCTCCACTCTCCTCAGCATACTTGGTGGTGACGATAATGATGGCCAGG
GTTATATCGCCCCCGGGACTGAGAAGGAGGTAAATACACTCGTTACAAAG
GACATGGAAAGAGAATCAGACATCTGATTATTGGGCGGCAATAGCTAAAG
GCGACCGCTCATCTTTGCAGGTTGAGCTCAGACGGGACTGGTCCAACACG
AGGCACGCCATGTGCGCCCGCCACCACACCTTGTGCATGAAGCGTTCCAC
CACGGAACACTTGCAGCTTCTCAGAACAACAAAGCACACACATATCTATT
TGTCACACCTTGCGCTCGACAAATCCACCTTGCTCTACACCCAAGTAGGT
GGCCATGCCGACAACTCATGACAGAAAACTACCATGCCCGACGGGAGCGT
ATGCCTACAACGAGTCGTGGGCGTCAAAGCATATAG
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Coding sequence (CDS) from alignment at chr_00:861550..862535+

>Ec-00_000620.1 ID=Ec-00_000620.1|Name=Ec-00_000620.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=210bp|location=Sequence derived from alignment at chr_00:861550..862535+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGCGCTTTCTGCTACCTGGTGGAGCTCACGGCGGCCCCCAACCACCG
GGAGCTGTCCAACGCCTACCACCGCATGGGGAAGGCCTACCAGGACTTGG
GCAGCCGCATCATGGCTCTCAGGTGGCCATGCCGACAACTCATGACAGAA
AACTACCATGCCCGACGGGAGCGTATGCCTACAACGAGTCGTGGGCGTCA
AAGCATATAG
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Synonyms
The feature 'Ec-00_000620.1' has the following synonyms
Synonym
Esi1144_0002
Esi_1144_0002