Ec-00_000600.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000600.1
Unique NameEc-00_000600.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length183
Homology
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BLAST of Ec-00_000600.1 vs. uniprot
Match: D7FHV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV8_ECTSI)

HSP 1 Score: 292 bits (747), Expect = 3.520e-98
Identity = 172/173 (99.42%), Postives = 173/173 (100.00%), Query Frame = 1 
Query:   28 VEEESKMEVDSPXXXXXXXXXXXXXXXXXRPAGAGAATATWEKYEWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQQAAAQAKQDEGEEAAEEEDAPMTSPAVKGKGKAPAHEGSGGGRPGGRAGIPPVVVNLNSSSSELKLLRVLQTLVNLSGKDTDVGGGYDGTGLTFAC 546
            +EEESKMEVDSPXXXXXXXXXXXXXXXXXRPAGAGAATATWEKYEWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQQAAAQAKQDEGEEAAEEEDAPMTSPAVKGKGKAPAHEGSGGGRPGGRAGIPPVVVNLNSSSSELKLLRVLQTLVNLSGKDTDVGGGYDGTGLTFAC
Sbjct:   54 IEEESKMEVDSPXXXXXXXXXXXXXXXXXRPAGAGAATATWEKYEWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQQAAAQAKQDEGEEAAEEEDAPMTSPAVKGKGKAPAHEGSGGGRPGGRAGIPPVVVNLNSSSSELKLLRVLQTLVNLSGKDTDVGGGYDGTGLTFAC 226
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BLAST of Ec-00_000600.1 vs. uniprot
Match: A0A6H5K1Z7_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Z7_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 1.900e-47
Identity = 111/184 (60.33%), Postives = 115/184 (62.50%), Query Frame = 1 
Query:  115 RPAGAGAATATWEKYEWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQQAAAQ------------------------------------------AKQDEGEEAAEEED-----------APMTSPAVKGKGKAPAHEGSGGGRPGGRAGIPPVVVNLNSSSSELKLLRVLQTLVNLSGKDTDV 507
            RPAGAGAATAT EKYEWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQ+                                              AK+D    AA +             APMT P VKGKGKAPAHEGSGGGR GGRAGIPPVVVNLNSSSSELKLLRVLQTLVNLSG DTD+
Sbjct:  296 RPAGAGAATATSEKYEWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQRVGTVVSNLSKVPENRMILLKELVSVAKSLGAVSTHDLQSLEQQLDVAKRDAMARAAAQXXXXXXXXXXXXXAPMTLPVVKGKGKAPAHEGSGGGRSGGRAGIPPVVVNLNSSSSELKLLRVLQTLVNLSGNDTDM 479
[Close]
BLAST of Ec-00_000600.1 vs. uniprot
Match: D7G3W3_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W3_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.120e-5
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:  250 SFQQAAAQAKQDEGEEAAEEEDAPMTSPAVKGKGKA 357
            + QQAAAQAKQDEGEE AEEEDAPMTSPAVKGKG A
Sbjct:  860 ALQQAAAQAKQDEGEEVAEEEDAPMTSPAVKGKGVA 895
The following BLAST results are available for this feature:
BLAST of Ec-00_000600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FHV8_ECTSI3.520e-9899.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1Z7_9PHAE1.900e-4760.33HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G3W3_ECTSI1.120e-588.89HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:805987..809746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length549
Hectar predicted targeting categoryother localisation
Gene idEc-00_000600.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000600Ec-00_000600Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 805987..809746 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000600.1Ec-00_000600.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 805987..809746 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000600.1.1Ec-00_000600.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 805987..806002 +
Ec-00_000600.1.2Ec-00_000600.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 807119..807360 +
Ec-00_000600.1.3Ec-00_000600.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 808742..808831 +
Ec-00_000600.1.4Ec-00_000600.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 809342..809495 +
Ec-00_000600.1.5Ec-00_000600.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 809700..809746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000600.1CDS:Ec-00_000600.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 805987..806002 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000600.1 ID=Ec-00_000600.1|Name=Ec-00_000600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=183bp
MDVAGGSPAVEEESKMEVDSPPPPAAAATAAPAAAAAGRPAGAGAATATW
EKYEWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQQAAAQAKQDEGEEA
AEEEDAPMTSPAVKGKGKAPAHEGSGGGRPGGRAGIPPVVVNLNSSSSEL
KLLRVLQTLVNLSGKDTDVGGGYDGTGLTFAC*
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spliced messenger RNA

>Ec-00_000600.1 ID=Ec-00_000600.1|Name=Ec-00_000600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=549bp|location=Sequence derived from alignment at chr_00:805987..809746+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTGGCGGGAGGGTCCCCCGCAGTCGAGGAGGAGTCGAAGATGGA
GGTGGATTCCCCTCCGCCACCTGCGGCGGCGGCTACGGCGGCGCCTGCGG
CGGCGGCGGCGGGACGCCCGGCGGGAGCGGGAGCGGCGACGGCCACTTGG
GAGAAGTACGAGTGGGTGAAGGTGCCGGCCCCCGTGGTGCAGCACGAGAG
GCTGCGGCTGCTGTGCTCGGTGCTACGGCTGGAGGCCTGCAGCGACAATT
CCTTCCAGCAGGCAGCCGCGCAGGCTAAGCAGGATGAGGGGGAGGAGGCG
GCGGAGGAGGAAGACGCACCCATGACGTCGCCAGCAGTGAAGGGCAAGGG
GAAGGCGCCCGCACATGAAGGTAGCGGCGGTGGCAGACCGGGGGGGCGCG
CAGGAATCCCTCCTGTGGTGGTCAACCTCAACTCGTCATCGAGCGAGCTG
AAGCTCCTGCGGGTGTTGCAGACCCTGGTTAACCTTTCGGGGAAGGATAC
CGATGTCGGGGGCGGGTACGATGGCACGGGATTGACCTTTGCTTGTTAG
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protein sequence of Ec-00_000600.1

>Ec-00_000600.1 ID=Ec-00_000600.1|Name=Ec-00_000600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=183bp
MDVAGGSPAVEEESKMEVDSPPPPAAAATAAPAAAAAGRPAGAGAATATW
EKYEWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQQAAAQAKQDEGEEA
AEEEDAPMTSPAVKGKGKAPAHEGSGGGRPGGRAGIPPVVVNLNSSSSEL
KLLRVLQTLVNLSGKDTDVGGGYDGTGLTFAC*
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mRNA from alignment at chr_00:805987..809746+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000600.1 ID=Ec-00_000600.1|Name=Ec-00_000600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3760bp|location=Sequence derived from alignment at chr_00:805987..809746+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACGTGGCGGGAGGTGTGTGCTGCTGTTTTTTCTGTTTTTTCTGTTT
TTTTGTTGTTTTTTTACCACTATTAATGCCCCGTGGGAACGTGCTTCTGG
GCGTGCATTCCATCGCCCGCTGCTGTGTGAATTATTTGTGCTCCATTTCA
TTGATCTGTGTACCGTCGGGGTCAAACACACACACCAACCACAGGGGGAG
TCTGTTGTGTGCCTGTCATTCGTGTGTGTGCCCTCTCTCTCTGTATCTTT
TTCGGTGGACGGAAACAACGCAGCAGCGTATGTCCACCAGTCGCTGATTG
GAAGTCACCCCGAAAACCCCTAGTACTATGTAGATTGGTATCCACACGGC
CAAACCTCTTCCCACCCCTCTGCTGACATCGGTGGCATTCGTAGCGAACG
CTTCCAGATTAAGGAACCCAGACGATATCGGCGCCGCTGATCGAGTCACC
ACAATAAACTTCCCTCCAGAGCGGGGTGATGCGATACGAAAATAAAAGCA
GGCAGCAGGACCTACCCACGGCTGTCTGCCAGCTGCATCGTGACGTTCCC
CAAGTTGAGCAGCTTACGCAGCTGACGCGTTCTTGACTCGAACAGCCCAG
CGAACCTCACCGAACCAAAAAAGAAAAATTAACAAATCTGTATACAGTCT
TATAACCGCACGGCCGAACCCCTTTTCACCCACCTCACAGCTGCCAAACC
TTCGAACTAAAAACCCAGACGGTTCTGCTCGAAAGTCACCCCGAAAAAAC
TCTGGTACGCATACTGGTGTATATTGTAGCCTCACGGCCAACCCTCTTCT
CACTCCGCATCCGCCGAACCTTCCGACGAAAATATCTCCAGACGATTCCG
GTGCCGGAGCGGCCAGCGGCGCCGCCGCCGCCGCCGTTCGCCCGGATGGC
GTTCTGCTGGAGCAGCTCATGGACCTGCTCGACCGGCCCCTGTACACCAT
GAGCGGCCCCGATCTCGACGAGCTCCTGCAGCTCATCGAGGTGCTCGTGG
CCCCGCTCGCCAACCTCAAGGAGACGCCGCGGCCGGCTGTAGAAGAAGCC
GCAGGGGGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCCGCCGGCGGTACCGGTGAATCAGGGTCCCCCGCAGTCGAGG
AGGAGTCGAAGATGGAGGTGGATTCCCCTCCGCCACCTGCGGCGGCGGCT
ACGGCGGCGCCTGCGGCGGCGGCGGCGGGACGCCCGGCGGGAGCGGGAGC
GGCGACGGCCACTTGGGAGAAGTACGAGTGGGTGAAGGTGCCGGCCCCCG
TGGTGCAGCACGAGAGGCTGCGGCTGCTGTGCTCGGTGCTACGGCTGGAG
GCCTGCAGCGACAATTCCTTCCAGGTGGGTAGAGGGGGTGTGGTGTGTTG
CATGGTGGGCCTTGAGTAGCCCCTCCCCGGCTACCCCTCGAACCCACGTC
CGTCACGACTGTCACCGTGCTGCGCCTGTGTTCCGGGGGTTACTCCCGTC
TTACATCCACACGCCTCTTAAGCGCGGACCCCCCGCGCCTCCGCGCGACC
CTTGTGATGTTTCTCTGTCCAGGAAGGGCTGCATGGTCGTGTGCTCAAAT
GGTTCCTTGTAGGCAAAAGTAGCCAAAAGCGCGTCATGTCAGCGCAACAC
CCACAGACAAGAGGAGTGGGTAGTAATATATCTGAGCCCCCCCCCTTCCC
CCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTTGGGACGATGGATGGAAAGGCAGCTTGTAATTCGGTGGTTGATAGTCG
AGAGAGTGGGATGGGATGAGATGGCAGCGGCCAAGGTGTAGATCTGTGGA
TAGATTGGACGAGCTCGGCGGTAATGATTTTGTACCTCAATAATGGGGCG
GCGGGGGGGGGGGTATTCACGTTTTGCATGCCTTTGTTATGACCACGCGT
CTTCCTCGAGAGGACAAAGCGGGATGGGGGGGGGGTTACGCAATGTTGTG
TTTGCGCGTGCTCGGTGGCTTGGTTGGGGGTTGAGCCGGGCTACCGACCG
TAAAGCGGTTTGGGATCAGCGCAAACGCCCGCATGAATCCAATGGTGATT
TTCCAGCCCCTCAACACGCCGCGCACTCGAGAAGGGCCGCCATTGTTGTC
CTCCTCCTCCAGTTTTTTTTTTTTTTTTTTGGCAAGCCTGTTGTTGCTCA
TGACGGGGAAATGAGCGACAGTGCGAGAGGGGAAATGCTTGGGCGAGTTG
CTGTGTTGGGTAGACCGAGGGAAATAACTTGCTCACGCTCGCTCGTCAAC
TCACCCTTGCTATCTTTCTGGGTCATCGTCGTTCCAAACTATTGGAACGA
AGCAGCAGGCAGCCGCGCAGGCTAAGCAGGATGAGGGGGAGGAGGCGGCG
GAGGAGGAAGACGCACCCATGACGTCGCCAGCAGTGAAGGGCAAGGTGGG
TTTGTATTTTTTTTTTTTTGTGTGTTCACGTCGAAATTTCAGACTTTATT
TGATTTTACTGTTTTGTTGGTGACTGGCCGCGAACACCAGAGGTTGCTCC
GCGATGACGGAGTTCGAGATTCGTTTGTTCGTTATTCTGGCGCAACTGCT
GTAGCGTGAAGAGCACCTGGCTTTCCGAACTCCGTTATTGGTGGTGGTTA
TTATTGTCGTTGTCGTTGTTGGTATTATCTCACCTGTTTCGATAATTGTT
ACTTGTTAGGCGTTGTTGTTTGATGTCGTTGTCGTTGTCGGCGTCGGAGT
CTCTGGTATAACAGCGCAATGACCGAGGCGGTGGTGTCCTCTGATGCCCG
TTTACGGGGCAACTACACGCTAGTTTTTCGTTTGCAGGGAAAACCCCGTC
GTGTGTGTCTGCCCGCCTCGCTTCTACCCTACCGCGGTCGAACAACGCGT
CACCACCCTCCCGTCCCTCCCGTCCCTCCCCTCCCTTCCCCTTCCCGCAA
CTCAGGGGAAGGCGCCCGCACATGAAGGTAGCGGCGGTGGCAGACCGGGG
GGGCGCGCAGGAATCCCTCCTGTGGTGGTCAACCTCAACTCGTCATCGAG
CGAGCTGAAGCTCCTGCGGGTGTTGCAGACCCTGGTTAACCTTTCGGGGA
AGGATACCGGTGAGGGGTGGTGTGTGATGCCGTGGGGAGTCAGATGGTGG
AGATTTGATTGTGGCTTGTGACGTTTTTTGGCCGTTTGCGGGGATGAGGT
TTTGGCCTGTTTGCTGGGATGTTGGGGGCTGGTAGTACGGCGTGGGGATT
GATTGGCCCTTGCCTGTTAGATGGGCCGTGTGCGGGGTTGAGTTTTTTTC
CCTGTTTGCTGAGATGTCGGGGGCGGGTACGATGGCACGGGATTGACCTT
TGCTTGTTAG
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Coding sequence (CDS) from alignment at chr_00:805987..809746+

>Ec-00_000600.1 ID=Ec-00_000600.1|Name=Ec-00_000600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=549bp|location=Sequence derived from alignment at chr_00:805987..809746+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACGTGGCGGGAGGGTCCCCCGCAGTCGAGGAGGAGTCGAAGATGGA
GGTGGATTCCCCTCCGCCACCTGCGGCGGCGGCTACGGCGGCGCCTGCGG
CGGCGGCGGCGGGACGCCCGGCGGGAGCGGGAGCGGCGACGGCCACTTGG
GAGAAGTACGAGTGGGTGAAGGTGCCGGCCCCCGTGGTGCAGCACGAGAG
GCTGCGGCTGCTGTGCTCGGTGCTACGGCTGGAGGCCTGCAGCGACAATT
CCTTCCAGCAGGCAGCCGCGCAGGCTAAGCAGGATGAGGGGGAGGAGGCG
GCGGAGGAGGAAGACGCACCCATGACGTCGCCAGCAGTGAAGGGCAAGGG
GAAGGCGCCCGCACATGAAGGTAGCGGCGGTGGCAGACCGGGGGGGCGCG
CAGGAATCCCTCCTGTGGTGGTCAACCTCAACTCGTCATCGAGCGAGCTG
AAGCTCCTGCGGGTGTTGCAGACCCTGGTTAACCTTTCGGGGAAGGATAC
CGATGTCGGGGGCGGGTACGATGGCACGGGATTGACCTTTGCTTGTTAG
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Synonyms
The feature 'Ec-00_000600.1' has the following synonyms
Synonym
Esi1133_0001
Esi_1133_0001