Ec-00_000590.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000590.1
Unique NameEc-00_000590.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length108
Homology
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BLAST of Ec-00_000590.1 vs. uniprot
Match: D7FHV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV7_ECTSI)

HSP 1 Score: 216 bits (549), Expect = 3.070e-70
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 
Query:    1 MVCAGHTNFSDSPLFAPGPLRKLQGAGDIDCVIFIDQVTRLALCALEIFLRRRTSSGDAAKTPAPGDLGSVVLGEDLAVAFPEARVKRVCAGGVMPSPRTKISSTVP 321
            MVCAGHTNFSDSPLFAPGPLRKLQGAGDIDCVIFIDQVTRLALCALEIFLRRRTSSGDAAKTPAPGDLGSVVLGEDLAVAFPEARVKRVCAGGVMPSPRTKISSTVP
Sbjct:    1 MVCAGHTNFSDSPLFAPGPLRKLQGAGDIDCVIFIDQVTRLALCALEIFLRRRTSSGDAAKTPAPGDLGSVVLGEDLAVAFPEARVKRVCAGGVMPSPRTKISSTVP 107
The following BLAST results are available for this feature:
BLAST of Ec-00_000590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHV7_ECTSI3.070e-70100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:804123..804938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length468
Hectar predicted targeting categoryother localisation
Gene idEc-00_000590.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000590Ec-00_000590Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 804123..804938 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000590.1.2Ec-00_000590.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 804123..804479 -
Ec-00_000590.1.1Ec-00_000590.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 804828..804938 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0005903UTR:Ec-00_000590.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 804123..804266 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000590.1CDS:Ec-00_000590.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 804267..804479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000590.1Ec-00_000590.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 804267..804938 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000590.1 ID=Ec-00_000590.1|Name=Ec-00_000590.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=108bp
MVCAGHTNFSDSPLFAPGPLRKLQGAGDIDCVIFIDQVTRLALCALEIFL
RRRTSSGDAAKTPAPGDLGSVVLGEDLAVAFPEARVKRVCAGGVMPSPRT
KISSTVP*
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spliced messenger RNA

>Ec-00_000590.1 ID=Ec-00_000590.1|Name=Ec-00_000590.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=468bp|location=Sequence derived from alignment at chr_00:804123..804938- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTGTGCAGGCCACACCAACTTTTCGGACTCTCCCCTGTTCGCCCC
CGGACCGTTGCGGAAGCTACAGGGCGCCGGGGATATAGATTGTGTCATTT
TCATTGACCAGGTGACCCGCCTGGCGCTCTGCGCCCTCGAGATCTTCCTC
CGGAGGCGGACCAGCTCGGGGGACGCGGCGAAGACGCCTGCGCCGGGTGA
CCTAGGGTCGGTGGTGCTCGGCGAAGACTTGGCCGTCGCTTTCCCCGAGG
CCCGGGTGAAGAGAGTGTGCGCGGGGGGCGTGATGCCCTCCCCGCGCACC
AAAATAAGCAGCACGGTGCCCTAGAAGAGAGTTTGTAGAGAGCACGACGC
CGGGCTGAACGGTAGATAGAGCGCCTTTGCACGGAGAACGGTGGGGTGAA
ATTCCTCACTTTTGCGGCAGAAGAAAAGCGTGCAAATAGTCGTGTTTCCT
CTCTCTCAAACAGGTGTA
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protein sequence of Ec-00_000590.1

>Ec-00_000590.1 ID=Ec-00_000590.1|Name=Ec-00_000590.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=108bp
MVCAGHTNFSDSPLFAPGPLRKLQGAGDIDCVIFIDQVTRLALCALEIFL
RRRTSSGDAAKTPAPGDLGSVVLGEDLAVAFPEARVKRVCAGGVMPSPRT
KISSTVP*
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mRNA from alignment at chr_00:804123..804938-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000590.1 ID=Ec-00_000590.1|Name=Ec-00_000590.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=816bp|location=Sequence derived from alignment at chr_00:804123..804938- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTTTGTGCAGGCCACACCAACTTTTCGGACTCTCCCCTGTTCGCCCC
CGGACCGTTGCGGAAGCTACAGGGCGCCGGGGATATAGATTGTGTCATTT
TCATTGACCAGGTGAGGCCTGTGCTGCTGGCAGCAGTGGGTGCAGGGGCG
CGTGATGAAAGCTATGCGTTGCCACGGGAGAACGGCTACAGGACCGGTTG
ACTGTCGTGAGGGTGGGCTGTTTCGATGCGAGCGAAAACGTCGGTGCTGG
GTGCGCCGGCGCATATTCCTTGTTTGAGGTGCATTCGCTTTGACCCCAGC
AGGCGTGGCTTTTTTCTCACCCTCGAAATTCGCAACACTTTCCCGACGGC
CCCCCACAGCCCCCGATAGCGGGTCAACGCCAATCGAACGACACACGCAA
TAAAAAACGGACGGGCGCCCCAACAACAGAGTTTCGGTGCCCCTCGCCCC
TGGCCACAGGTGACCCGCCTGGCGCTCTGCGCCCTCGAGATCTTCCTCCG
GAGGCGGACCAGCTCGGGGGACGCGGCGAAGACGCCTGCGCCGGGTGACC
TAGGGTCGGTGGTGCTCGGCGAAGACTTGGCCGTCGCTTTCCCCGAGGCC
CGGGTGAAGAGAGTGTGCGCGGGGGGCGTGATGCCCTCCCCGCGCACCAA
AATAAGCAGCACGGTGCCCTAGAAGAGAGTTTGTAGAGAGCACGACGCCG
GGCTGAACGGTAGATAGAGCGCCTTTGCACGGAGAACGGTGGGGTGAAAT
TCCTCACTTTTGCGGCAGAAGAAAAGCGTGCAAATAGTCGTGTTTCCTCT
CTCTCAAACAGGTGTA
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Coding sequence (CDS) from alignment at chr_00:804123..804938-

>Ec-00_000590.1 ID=Ec-00_000590.1|Name=Ec-00_000590.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=324bp|location=Sequence derived from alignment at chr_00:804123..804938- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTTTGTGCAGGCCACACCAACTTTTCGGACTCTCCCCTGTTCGCCCC
CGGACCGTTGCGGAAGCTACAGGGCGCCGGGGATATAGATTGTGTCATTT
TCATTGACCAGGTGACCCGCCTGGCGCTCTGCGCCCTCGAGATCTTCCTC
CGGAGGCGGACCAGCTCGGGGGACGCGGCGAAGACGCCTGCGCCGGGTGA
CCTAGGGTCGGTGGTGCTCGGCGAAGACTTGGCCGTCGCTTTCCCCGAGG
CCCGGGTGAAGAGAGTGTGCGCGGGGGGCGTGATGCCCTCCCCGCGCACC
AAAATAAGCAGCACGGTGCCCTAG
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Synonyms
The feature 'Ec-00_000590.1' has the following synonyms
Synonym
Esi1132_0002
Esi_1132_0002