Ec-00_000550.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000550.1
Unique NameEc-00_000550.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length352
Homology
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BLAST of Ec-00_000550.1 vs. uniprot
Match: D7FHV3_ECTSI (Phosphatidylinositol glycan anchor biosynthesis, class Q n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV3_ECTSI)

HSP 1 Score: 684 bits (1764), Expect = 3.280e-248
Identity = 351/351 (100.00%), Postives = 351/351 (100.00%), Query Frame = 1 
Query:    1 MHGNKKGVRDPGGTRKRRSGYHASQAAGPIEGAGAVAGSIGGGGVSIPGRVLLDGCCLLLRISSWVAFLVVAVLESKVVWTPLGDELWRSPSDASLVCAHLAARLRGALSLPLRLSRCWKERHQPAERRVEGLVGLSHWLFGVAADAALGVVACALLLRHTEAAARAAHQALHLLHVDVLSEELEWLNYFPAGFKLNVPLTHTLGSLTLVGMEAYASIVGQLAQWEGAAMKAIAICAAGGGLTTALAVAHDILRLLALHTATAHTAFAALHNLHSSLLGSLWQLFRGRKRNVLRCRVDTCMYDACQLLLGTLVFTVLSFLTPTISVYYTFFCIVQAVAVGGQVRPPSPPPH 1053
            MHGNKKGVRDPGGTRKRRSGYHASQAAGPIEGAGAVAGSIGGGGVSIPGRVLLDGCCLLLRISSWVAFLVVAVLESKVVWTPLGDELWRSPSDASLVCAHLAARLRGALSLPLRLSRCWKERHQPAERRVEGLVGLSHWLFGVAADAALGVVACALLLRHTEAAARAAHQALHLLHVDVLSEELEWLNYFPAGFKLNVPLTHTLGSLTLVGMEAYASIVGQLAQWEGAAMKAIAICAAGGGLTTALAVAHDILRLLALHTATAHTAFAALHNLHSSLLGSLWQLFRGRKRNVLRCRVDTCMYDACQLLLGTLVFTVLSFLTPTISVYYTFFCIVQAVAVGGQVRPPSPPPH
Sbjct:    1 MHGNKKGVRDPGGTRKRRSGYHASQAAGPIEGAGAVAGSIGGGGVSIPGRVLLDGCCLLLRISSWVAFLVVAVLESKVVWTPLGDELWRSPSDASLVCAHLAARLRGALSLPLRLSRCWKERHQPAERRVEGLVGLSHWLFGVAADAALGVVACALLLRHTEAAARAAHQALHLLHVDVLSEELEWLNYFPAGFKLNVPLTHTLGSLTLVGMEAYASIVGQLAQWEGAAMKAIAICAAGGGLTTALAVAHDILRLLALHTATAHTAFAALHNLHSSLLGSLWQLFRGRKRNVLRCRVDTCMYDACQLLLGTLVFTVLSFLTPTISVYYTFFCIVQAVAVGGQVRPPSPPPH 351
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BLAST of Ec-00_000550.1 vs. uniprot
Match: A0A6H5K7D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7D0_9PHAE)

HSP 1 Score: 489 bits (1260), Expect = 4.920e-171
Identity = 249/255 (97.65%), Postives = 251/255 (98.43%), Query Frame = 1 
Query:  262 WRSPSDASLVCAHLAARLRGALSLPLRLSRCWKERHQPAERRVEGLVGLSHWLFGVAADAALGVVACALLLRHTEAAARAAHQALHLLHVDVLSEELEWLNYFPAGFKLNVPLTHTLGSLTLVGMEAYASIVGQLAQWEGAAMKAIAICAAGGGLTTALAVAHDILRLLALHTATAHTAFAALHNLHSSLLGSLWQLFRGRKRNVLRCRVDTCMYDACQLLLGTLVFTVLSFLTPTISVYYTFFCIVQAVAVGGQ 1026
            WRSPSDASLVCAHLAARLRGALSLPLRLSRCWKERHQPAERRVEGLVGLSHWLFGVAADA+LGVVAC LLLRHTEAAARAAHQALHLLHVDVLSEELEWLNYFPAGFKLNVPLTHTLGSLTLVGMEAYASIVGQLAQWEGA MKAIAIC AGGGL+TALAVAHDILRLL LHTATAHTAFAALHNLHSSLLGSLWQLFRGRKRNVLRCRVDTCMYDACQLLLGTLVFTVLSFLTPTISVYYTFFCIVQAVAVGGQ
Sbjct:   10 WRSPSDASLVCAHLAARLRGALSLPLRLSRCWKERHQPAERRVEGLVGLSHWLFGVAADASLGVVACVLLLRHTEAAARAAHQALHLLHVDVLSEELEWLNYFPAGFKLNVPLTHTLGSLTLVGMEAYASIVGQLAQWEGATMKAIAICGAGGGLSTALAVAHDILRLLTLHTATAHTAFAALHNLHSSLLGSLWQLFRGRKRNVLRCRVDTCMYDACQLLLGTLVFTVLSFLTPTISVYYTFFCIVQAVAVGGQ 264
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BLAST of Ec-00_000550.1 vs. uniprot
Match: A0A7S1CDH3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDH3_9STRA)

HSP 1 Score: 153 bits (386), Expect = 3.900e-39
Identity = 103/242 (42.56%), Postives = 133/242 (54.96%), Query Frame = 1 
Query:  310 RLRGALSLPLRLSRCWKERHQPAERRVEGLVGLSHWLFGVAADAALGVVACALLLRHT---EAAARAAHQALHLLHVDVLSEELEWLNYFPAGFKLNVPLTHTLGSLTLVGMEAYASIVGQLAQWEGAAMKAIA---ICAAGGGLTTALAVAHDILRLLALHTATAHTAFAALHNLHSSLLGSLWQLFRGRKRNVLRCRVDTCMYDACQLLLGTLVFTVLSFLTPTISVYYTFFCIVQAVAV 1017
            RLR  L  P+      K   Q  E R    V L + +F V AD  +G+ A   L +H    +   R  H     LHVDVL E++ WL   PAG KLN  L H LGS  L  ++ + ++   L   E   +  +A   +C    G T  LAVAHD L L+ +H    ++ FA LHN   S++GSLW+LFRG+KRNVLR RVD+C YD  QLL+GTL+FTVL FL PT  VYY FF  V  + +
Sbjct:   69 RLREILMWPVHFVSLRKRGWQRPELRTAEHVRLFNSMFLVVADVGIGIAAGVFLSKHAGSRDIVLRWFHTVGRFLHVDVLHEQVVWLMGLPAGLKLNQDLDHFLGSWVLRMIDLWNTVTTVLTPLEPVIVVVVATLGVC----GWTFVLAVAHDGLELMTVHIYLLYSVFAWLHNAQLSVIGSLWRLFRGKKRNVLRHRVDSCDYDVPQLLVGTLLFTVLFFLFPTSLVYYIFFTAVHLIVL 306
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BLAST of Ec-00_000550.1 vs. uniprot
Match: A0A835ZDM7_9STRA (N-acetylglucosaminyl transferase component-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDM7_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.090e-33
Identity = 96/284 (33.80%), Postives = 146/284 (51.41%), Query Frame = 1 
Query:  208 VVAVLESKVVWTPLGDELWRSPSDAS---LVCAHLAARLRGALSLPLRLSRCWK-----ERHQPAERRVEGLVGLSHWLFGVAADAALGVVACALLLRHTEAAARAAHQALHLLHVDVLSEELEWLNYFPAGFKLNVPLTHTLGSLTLVGMEAYASIVGQL---AQWEGAAMKAIAICAAGGGLTTALAVAHDILRLLALHTATAHTAFAALHNLHSSLLGSLWQLFRGRKRNVLRCRVDTCMYDACQLLLGTLVFTVLSFLTPTISVYYTFFCIVQAVAVGGQ 1026
            ++A   +K+     GD + R  +  S   L+CAHL  R +    LP  +S           H  AE  V  L  L   L     D +LG    A +  H  +      +    +    L  ++ WLN+ P GFKLN+P   TLG  T++ ++ Y +I+       QW    + A+ + +A GG++TA A   D+  +L LH    H + + L+  + + + SLW LFRG+KRNVLR R+D+C +D  QL+LGTL+FTVL FL PT++V+Y FF +++   V  Q
Sbjct:  218 LLAASAAKLPVPKAGDRIGRLLARGSQRWLLCAHLLERRKALAGLPKLVSAATATDSSLRAHAEAELAVSTLHKL---LCHAVVDLSLGCALAAGVYCHQASLVSCLSRCSRFVQEAPLLRQITWLNHHPGGFKLNLPAATTLGQATIMIVQVYCAIIRMALAHVQWL---VLALCLSSAFGGISTASAAVFDLFWVLTLHVTLIHRSLSVLYRGNLTAVISLWHLFRGKKRNVLRHRIDSCSFDHAQLMLGTLMFTVLLFLLPTVAVHYLFFSLLKMAQVAVQ 495
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BLAST of Ec-00_000550.1 vs. uniprot
Match: A0A6A7FTJ0_9CRUS (Gpi1p n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FTJ0_9CRUS)

HSP 1 Score: 132 bits (333), Expect = 1.690e-30
Identity = 67/167 (40.12%), Postives = 105/167 (62.87%), Query Frame = 1 
Query:  505 HQALHLLHVDVLSEELEWLNYFPAGFKLNVPLTHTLGSLTLVGMEAYASIVGQLAQWEGAAMKAIAICAAGGGLTTALAVAHDILRLLALHTATAHTAFAALHNLHSSLLGSLWQLFRGRKRNVLRCRVDTCMYDACQLLLGTLVFTVLSFLTPTISVYYTFFCIVQ 1005
            HQA H LH+DV+   + WL   PAG KLN  L H  GS+ L G++ + +I   +  WE A +  I+     G  +  L++  DIL ++ +H    +T FA L+++    L SLW+LFRG+K+N+LR R+D+C +D  QL++GT++F+++ FL PTI+ Y+ FF  V+
Sbjct:  377 HQAGHFLHLDVMRANIVWLMGLPAGLKLNHNLNHCFGSMVLFGIDFWDAITSVVTVWEPAVLWLISFAGILGA-SMVLSLCSDILSVVTIHVDFVYTTFAKLYSIEIKALSSLWKLFRGKKKNILRQRIDSCQFDVDQLMVGTILFSLIFFLLPTIATYFLFFSYVR 542
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BLAST of Ec-00_000550.1 vs. uniprot
Match: A0A7S2U6X6_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U6X6_9STRA)

HSP 1 Score: 127 bits (320), Expect = 8.740e-29
Identity = 77/201 (38.31%), Postives = 111/201 (55.22%), Query Frame = 1 
Query:  436 DAALGVVACALLLRHTEAAARAAHQALHLLHVDVLSEELEWLNYFPAGFKLNVPLTHTLGS---LTLVGMEAYASIVGQLAQWEGAAMKAIAICAAGGGLTTALAVAHDILRLLALHTATAHTAFAALHNLHSSLLGSLWQLFRGRKRNVLRCRVDTCMYDACQLLLGTLVFTVLSFLTPTISVYYTFFCIVQAVAVGGQV 1029
            D  LG+V    +L +TE        +  L+H  +L   + WL  FPAGFKLNVPLT  +G    + L   E  AS++      +   ++ +       G  T LA+A D+LR+ + H A  H AF  ++ +   +  SLW LFRG+K+N+LR R DT  YD+ QLL+G ++FT+  FL  T+ VYYTFF +V +V   G V
Sbjct:  401 DGILGIVFGLSILSNTEGVRELISVSWSLVHERLLRNNIGWLETFPAGFKLNVPLTQNMGREILMLLSTQEWLASLLLSEPSRQTLLLRILGFTGITFGAMTLLAIAFDMLRIASFHIAVFHAAFRNIYLVQLHMFSSLWYLFRGKKKNILRQRSDTLEYDSMQLLVGMILFTISLFLLTTVLVYYTFFAVVYSVVNFGTV 601
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BLAST of Ec-00_000550.1 vs. uniprot
Match: A0A0H5R8I3_9EUKA (Uncharacterized protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R8I3_9EUKA)

HSP 1 Score: 125 bits (315), Expect = 3.230e-28
Identity = 72/167 (43.11%), Postives = 105/167 (62.87%), Query Frame = 1 
Query:  505 HQALHLLHVDVLSEELEWLNYFPAGFKLNVPLTHTLGSLTLVGMEAYASIVGQLAQWEGAAMKAIAICAAGGGLTTALAVAHDILRLLALHTATAHTAFAALHNLHSSLLGSLWQLFRGRKRNVLRCRVDTCMYDACQLLLGTLVFTVLSFLTPTISVYYTFFCIVQ 1005
            H    +LHVDVL  ++ WL   PAG KLN  L   LG + L G++ + +I   L   E   +  ++I A  G  + A+A A D+L ++  H    HTAF+ L++L  S L +L +LF G+KRNVL+ RVD+C +D  QLLLGT++FT++ FL PT+++YY FF IV+
Sbjct:  353 HDGGRILHVDVLRRQVIWLMGLPAGMKLNFALDQALGLMVLYGIDFWNAITTVLTPLEHLIIVGVSIMAVFG-TSIAVACAIDLLSMMTTHILFIHTAFSRLYSLALSALSALSKLFSGKKRNVLQRRVDSCHFDVDQLLLGTILFTLIFFLFPTVAIYYLFFAIVR 518
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BLAST of Ec-00_000550.1 vs. uniprot
Match: A0A6A3XM14_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XM14_9STRA)

HSP 1 Score: 124 bits (310), Expect = 8.720e-28
Identity = 110/309 (35.60%), Postives = 156/309 (50.49%), Query Frame = 1 
Query:  136 SIPGRVLLDGCCLLLRISSWVAFLVVAVLESKVV-------WTPLGDELWRSPSDASLVCAHLAARLRGALSLPLRLS---RCWKERHQPAERRVEGLVGLSHWLFGVAADAALGVVACALLLRHTEAAARAAHQALH---LLHVDVLSEELEWLNYFPAGFKLNVPLTHTLGSLTLVGMEAYASIVGQLAQWE--GAAMKAIAICAAGGGLTTALAVAHDILRLLALHTATAHTAFAALHNLHSSLLGSLWQLFRGRKRNVLRCRVDTCMYDACQLLLGTLVFTVLSFLTPTISVYYTFFCIVQAVAV 1017
            ++ GR LL+     L  + +VA L VA    ++V       W P+G +  +S ++ S   A LA +L  A SLP RL    R  K+R    E R+E L+ + +W+  V  D  LG +A    L H         QA        V VL   +EWL   PAGFKLN PL   LG+  L+ +  ++ I  +L+  E  G   + + +     G+T  L +  D++ L   H+   +  FA L+ L   L  SL +LF G+K NVLR RVD+C YD  QLLLGTL+FT+L FL  T  V++ FF  V+   V
Sbjct:   97 ALRGRWLLETVGFYLLHAPFVALLAVASAFQRLVQAARTPAWLPVGGD--KSLAELSTFLAVLAQQLHNAASLPKRLRHFYRVSKQRGLSREERLE-LLEVLNWICFVLLDVMLGRLA----LVHFGGLVAPVFQATDSSPTAVVAVLRSNVEWLMGAPAGFKLNKPLASILGNGILLWLNLWSFIFEELSALENNGDLGQWLVLVCGHMGMTLQLTLLADLVSLSTWHSHWVYLYFAKLNRLQFGLFSSLSKLFLGKKINVLRHRVDSCEYDVGQLLLGTLLFTILVFLVTTNLVFFVFFAGVRGTIV 398
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BLAST of Ec-00_000550.1 vs. uniprot
Match: A0A7S4K6Y8_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K6Y8_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.970e-27
Identity = 71/166 (42.77%), Postives = 98/166 (59.04%), Query Frame = 1 
Query:  520 LLHVDVLSEELEWLNYFPAGFKLNVPLTHTLGSLTLVGMEAY----ASIVGQLAQWEGAAMKAIAICAAGGGLTTALAVAHDILRLLALHTATAHTAFAALHNLHSSLLGSLWQLFRGRKRNVLRCRVDTCMYDACQLLLGTLVFTVLSFLTPTISVYYTFFCIVQ 1005
            LLH  +L + + WL  FP GFKLNVPLT  +G   LV ME Y    ++++G  A+ +  A+  + I     G     A+  D++R+  LH +     F+ +H      L SLW+LFRG+K+N+LR R DT  YD+ QLLLGT++FT+  FL  TI VYYTFF  V 
Sbjct:  349 LLHRRLLRDNIGWLETFPVGFKLNVPLTRNMGREILVVMEVYEWSTSALLGSTARQK-TAIIVLGIMGMVFGFVMLSALIFDLVRVFTLHISVISKVFSKMHKTQLQALSSLWKLFRGKKQNILRSRTDTLEYDSMQLLLGTVLFTIFLFLFTTIVVYYTFFTAVN 513
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BLAST of Ec-00_000550.1 vs. uniprot
Match: A0A7S0VNY9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VNY9_9CRYP)

HSP 1 Score: 117 bits (292), Expect = 4.520e-27
Identity = 72/200 (36.00%), Postives = 106/200 (53.00%), Query Frame = 1 
Query:  427 VAADAALGVVACALLLRHTEAAARAAHQALHLLHVDVLSEELEWLNYFPAGFKLNVPLTHTLGSLTLVGMEAYASIVGQLAQWEGAAMKAIAICAAGGGLTTALAVAHDILRLLALHTATAHTAFAALHNLHSSLLGSLWQLFRGRKRNVLRCRVDTCMYDACQLLLGTLVFTVLSFLTPTISVYYTFFCIVQAVAVGGQ 1026
            V  D  LG+  C+  L+H+     A   A  + H   + + + W+   PAG KLN  L + LG+L ++G++ +    G         +  +++    G  T   A+  D+L L  +H  T +   A  H L + +L +LW+LFRG+KRNVLR R+D C Y   QLLLGTL+FT+L FL PT  VYY  F ++ A   G Q
Sbjct:   30 VGLDLLLGLWCCSYTLKHSREVLEAVDAASQV-HTRAVLQAVRWIMGVPAGLKLNDSLDYCLGNLCILGLQCFQVAYGLCRPLFPVVLLTVSVSGVFGA-TIMAAIISDLLSLATMHLYTFYALGARWHGLQTRVLSTLWRLFRGKKRNVLRGRIDACDYSLDQLLLGTLLFTLLVFLFPTTYVYYLLFFLLYAAVSGVQ 227
The following BLAST results are available for this feature:
BLAST of Ec-00_000550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHV3_ECTSI3.280e-248100.00Phosphatidylinositol glycan anchor biosynthesis, c... [more]
A0A6H5K7D0_9PHAE4.920e-17197.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1CDH3_9STRA3.900e-3942.56Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A835ZDM7_9STRA1.090e-3333.80N-acetylglucosaminyl transferase component-domain-... [more]
A0A6A7FTJ0_9CRUS1.690e-3040.12Gpi1p n=1 Tax=Hirondellea gigas TaxID=1518452 RepI... [more]
A0A7S2U6X6_9STRA8.740e-2938.31Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A0H5R8I3_9EUKA3.230e-2843.11Uncharacterized protein n=1 Tax=Spongospora subter... [more]
A0A6A3XM14_9STRA8.720e-2835.60Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A7S4K6Y8_9STRA1.970e-2742.77Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S0VNY9_9CRYP4.520e-2736.00Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:750971..755533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score688.0
Seed ortholog evalue2.4e-195
Seed eggNOG ortholog2880.D7FHV3
Preferred namePIGQ
Length1056
KEGG koko:K03860,ko:K15102
KEGG TC2.A.29.4
KEGG ReactionR05916
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categoryother localisation
Gene idEc-00_000550.1
GOsGO:0000506,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005975,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016254,GO:0016740,GO:0016757,GO:0016758,GO:0017176,GO:0019538,GO:0019637,GO:0031224,GO:0031984,GO:0032991,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0071704,GO:0090407,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1903509,GO:1990234
EggNOG free text desc.phosphatidylinositol N-acetylglucosaminyltransferase activity
EggNOG OGsKOG1183@1,KOG1183@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000550Ec-00_000550Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 750971..755533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000550.1Ec-00_000550.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 750971..755533 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000550.1.6Ec-00_000550.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 750971..751202 -
Ec-00_000550.1.5Ec-00_000550.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 751730..751875 -
Ec-00_000550.1.4Ec-00_000550.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 752269..752412 -
Ec-00_000550.1.3Ec-00_000550.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 752766..752912 -
Ec-00_000550.1.2Ec-00_000550.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 754044..754170 -
Ec-00_000550.1.1Ec-00_000550.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 755274..755533 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000550.1CDS:Ec-00_000550.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 750971..751202 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000550.1 ID=Ec-00_000550.1|Name=Ec-00_000550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=352bp
MHGNKKGVRDPGGTRKRRSGYHASQAAGPIEGAGAVAGSIGGGGVSIPGR
VLLDGCCLLLRISSWVAFLVVAVLESKVVWTPLGDELWRSPSDASLVCAH
LAARLRGALSLPLRLSRCWKERHQPAERRVEGLVGLSHWLFGVAADAALG
VVACALLLRHTEAAARAAHQALHLLHVDVLSEELEWLNYFPAGFKLNVPL
THTLGSLTLVGMEAYASIVGQLAQWEGAAMKAIAICAAGGGLTTALAVAH
DILRLLALHTATAHTAFAALHNLHSSLLGSLWQLFRGRKRNVLRCRVDTC
MYDACQLLLGTLVFTVLSFLTPTISVYYTFFCIVQAVAVGGQVRPPSPPP
H*
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spliced messenger RNA

>Ec-00_000550.1 ID=Ec-00_000550.1|Name=Ec-00_000550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1056bp|location=Sequence derived from alignment at chr_00:750971..755533- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGGGAACAAGAAGGGAGTTCGAGACCCGGGGGGTACGCGGAAGAG
AAGAAGCGGGTACCATGCGTCGCAGGCGGCGGGGCCAATAGAGGGGGCGG
GCGCCGTTGCGGGATCGATCGGGGGGGGGGGGGTCAGCATCCCCGGGCGC
GTCCTCCTGGACGGGTGCTGCCTGCTTCTGAGGATTTCGAGTTGGGTGGC
GTTCTTGGTGGTGGCCGTCCTGGAGAGCAAGGTCGTCTGGACGCCCCTGG
GAGATGAGCTGTGGCGTTCGCCCTCCGACGCATCGTTGGTCTGCGCGCAC
CTCGCGGCTCGGCTCAGGGGCGCCCTGTCTCTGCCGCTGCGGCTGAGCAG
GTGCTGGAAGGAGCGGCACCAGCCCGCGGAGAGACGGGTGGAAGGGCTCG
TGGGGCTGAGCCACTGGCTTTTCGGGGTCGCCGCCGACGCCGCCCTTGGC
GTCGTCGCGTGCGCGCTGCTGCTGAGGCACACGGAGGCCGCGGCAAGGGC
TGCTCACCAGGCTCTTCACCTGCTACACGTTGACGTGCTAAGTGAAGAGC
TAGAGTGGCTCAACTACTTCCCAGCGGGGTTCAAGCTCAACGTTCCCCTG
ACGCACACCTTGGGGTCTCTGACTCTCGTCGGCATGGAGGCCTACGCCTC
CATCGTCGGACAGCTGGCCCAATGGGAGGGCGCCGCGATGAAGGCGATAG
CGATCTGCGCGGCCGGCGGGGGCCTCACCACCGCCCTCGCCGTCGCGCAC
GACATCCTCAGGCTTCTCGCCCTGCACACGGCCACCGCCCACACCGCCTT
CGCCGCCCTTCACAACCTGCACAGCTCTCTGCTGGGGTCCCTGTGGCAGC
TGTTCCGGGGCCGCAAGCGGAACGTCTTGAGGTGCCGGGTGGACACGTGC
ATGTACGACGCCTGCCAGCTGCTGCTCGGCACCCTCGTCTTCACGGTGTT
GTCGTTCCTCACACCCACCATCTCGGTGTACTACACCTTCTTCTGCATCG
TGCAGGCCGTCGCCGTCGGAGGGCAGGTGCGCCCCCCCTCCCCCCCCCCG
CATTGA
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protein sequence of Ec-00_000550.1

>Ec-00_000550.1 ID=Ec-00_000550.1|Name=Ec-00_000550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=352bp
MHGNKKGVRDPGGTRKRRSGYHASQAAGPIEGAGAVAGSIGGGGVSIPGR
VLLDGCCLLLRISSWVAFLVVAVLESKVVWTPLGDELWRSPSDASLVCAH
LAARLRGALSLPLRLSRCWKERHQPAERRVEGLVGLSHWLFGVAADAALG
VVACALLLRHTEAAARAAHQALHLLHVDVLSEELEWLNYFPAGFKLNVPL
THTLGSLTLVGMEAYASIVGQLAQWEGAAMKAIAICAAGGGLTTALAVAH
DILRLLALHTATAHTAFAALHNLHSSLLGSLWQLFRGRKRNVLRCRVDTC
MYDACQLLLGTLVFTVLSFLTPTISVYYTFFCIVQAVAVGGQVRPPSPPP
H*
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mRNA from alignment at chr_00:750971..755533-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000550.1 ID=Ec-00_000550.1|Name=Ec-00_000550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4563bp|location=Sequence derived from alignment at chr_00:750971..755533- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCATGGGAACAAGAAGGGAGTTCGAGACCCGGGGGGTACGCGGAAGAG
AAGAAGCGGGTACCATGCGTCGCAGGCGGCGGGGCCAATAGAGGGGGCGG
GCGCCGTTGCGGGATCGATCGGGGGGGGGGGGGTCAGCATCCCCGGGCGC
GTCCTCCTGGACGGGTGCTGCCTGCTTCTGAGGATTTCGAGTTGGGTGGC
GTTCTTGGTGGTGGCCGTCCTGGAGAGCAAGGTCGTCTGGACGCCCCTGG
GAGATGAGCTGTGAGAGCTTTGCGTCACACTGGAATGCAACACAGGTTTA
TTCATAGCTGTTTCTGGAAGTGAACCCACCAGGACATTCGCAGCGTTTAT
CCGTACTCGAGAAAGCAAGCACAACTCCCTTCGCAGGATGCAGCGCACCC
TCCATGCGAATCGCCTGCTCTTACCTCACGGCGCTTCGTGCTTGGTGTTG
AGCGTTGAGGTGTGCGCCCTGGGAATAGCATGTGGTACCATATTGTAGTT
TTTTTTTTGACGCTTCCTAGCTCGGCTGCTCCACGGACGTCGGACGTGCC
CTGCCCCGGTTCTATTAAGTTACGAGCGACGATTGTTTTTATTTTCGCCA
GAGGCGCACAAAAGTATAGCACACCTTGGTGGTCTACTGTATGGGGGAGG
GTGACCTCATGTCGCTTGATCTGAGACCGTGCTATTTTCCCGGGTGTATC
CCCGCACTGTGAGTTTTGTGACACTTGTTGAACCCCTACCCGGAATTCCT
GCGAGTTCTGTGACGCACACTATTCCACGTCCTACCTGACAATTCTGTGA
GTTTTTTCATTTCTTCCAACGGCCTACCCGGCATTTTACACCAACGCCTT
TAAAGAGCGCATAACTTTGAGTTTGACAGGACTTCCATGCCTCTCCCGTA
AAATTGCAACAATCCATTTGACAGGACATGCGCCCTTGCTTGCAAAAGTT
CCTCTGGGTATATACCCATACCCTGCACTTCCGTGAGGTCTGTGACGCTT
TTGAAACCTTACCCGATACTTTCGTGAGTTCTGTAAGGTCTCTTTCATCA
AACCCTTACAGCACACGCTCCCTTGTAGGATTTGTTTTTTGCGAGTTCTC
AAAACCTTCAAAAGACCCTCCCCTCAAATTTCAGCAAGCCTTGTAGCACA
CGCCTCTCGGTCGGAGGGAATTGTTTTGTGAGCTTTGAAAGACTTCAAAA
GACCCTACCCTCAAATTTCAACATACCCTTACAGCACATGCCCCTTTGGA
GGAATATTGTATGGGTTTTAAAATGCATGAAAAGGCCTTCCCCGCATATT
TCAACACACCCTTACAGAACACGCCCCTGTCCTTCCTTGCATATTATCGA
ACTCTGGACTCAGGTGGCGTTCGCCCTCCGACGCATCGTTGGTCTGCGCG
CACCTCGCGGCTCGGCTCAGGGGCGCCCTGTCTCTGCCGCTGCGGCTGAG
CAGGTGCTGGAAGGAGCGGCACCAGCCCGCGGAGAGACGGGTAAGTTTGG
CAAACGAACAGCCCTGCCGCCTTACTCTCAGTTTGGCAAACGAACAGCCT
TTGCTGTGTAACCTTCACCCTGTTGCCCTCAGCTTGGCGAACCAACAGCC
CTTGCCGCCTATCCCGACATAACCCTATTACCCTCAGTTTGGCTTACGAA
CAGCCCTTGCCGTCTAACCCTACCCCTAGTGCCCTCAGTTTGGCAAATGA
ACAGCGCTTTTGCCGTACCGAACCACCGATGAGCCGCGGGTTTGTGTTCC
ACCTACTCAAGGAGATTTATCCGCAGGAAGAATGACCTCGTGTGAGTGAG
TTTTGGCAAACGGACAACCATGTCGTACTTTTGGGCCGCGATTGGCAACA
AACAACCCTTGCCGTACTACGATTTGGCAGCGGTTCTTAGGAAGTACGAA
GTACACACAAAATGACAGAGTGCACCTAAGTCCCTGAGAGAAAGATGACT
ACCCGTTGAATATATAGCCACACTGGTCGAAGGAGATGTGCTCAAGTCCT
GACGACAGTGAGTGGGCAAAAACCCGGCTGGATATTGGGCTTGCTTTTGA
AGGCTACAGCATTGGTTTTGTGCAGCGCACCCAGTTCAGGAGGTTTCTCT
GTGTAGCGTACCTTTGGCATTTTTCCACATGGCCAGCAGCCAGTCAACGC
GTGAGTTTGGCAACGGCGACCGAGGAGTCTTTTGGTTTTGAGACCCGTGC
TGGTGATGGGGTGGGCGTTGGTAGTGGTACCGTGGGTGACGTAAGATAAC
ACACCCCCTGGACCGATCAGATGACAGCTCGATTGCTCCACGGCAAACAG
GGTGGCAGAAAAAGATGATCGGCTGTCGGAAAGCTCTCGACGAGCCGGTT
CTAACGCCGCCGCTTCATGGCACCGTCACCTATCTTCTGCTGTGTGGAGT
ATTCGAGCTTCGGTAATCGTTCGACGGCGTATGGCATATTTCGTCACCTA
CTGCGGTCTCCGCGTTCGCCCTTGACGGAGACGATGTTCTCATCTCAACT
AATGACACACACCCCTATGTAAATAATATCCACACCGCGGAGCCCCCGAG
GACTTTCTACAAGTAAGTGTGACTGCCATTGACCAACAGCACCTTGTGTA
ACTCCTTCCGTTGGCCAGCAGGTGGAAGGGCTCGTGGGGCTGAGCCACTG
GCTTTTCGGGGTCGCCGCCGACGCCGCCCTTGGCGTCGTCGCGTGCGCGC
TGCTGCTGAGGCACACGGAGGCCGCGGCAAGGGCTGCTCACCAGGCTCTT
CACCTGCTACACGTTGACGTACGTGAGAGTTTTTTTTTTTTTTCGGAGGC
GTTTTTTTTTCGTGCTGGGGCGAAGGAGGGAAGAGGGGTTCTACCGAGAG
CCCGGCGAGCAGTATATTCTCGAAGTGCGTGAGGTGTGTGAGGTGGTTGT
TTGAGTGTGTGTGTGCCAGGCAACTGTGTATCTGTTCTGTTGGCCTCATC
AAAAGCCTAACTCAACCAAATGGGCTGGTCCGTGGTAACCGGCTGGCCAA
TCAAAAGACGTTTGTAAACCTCTGTGCGGATAATAATCGTTGTCGGCACT
GTTGTTTGATGATGGCGTGAGCACGTCCCACCGCTCCCCAACAACAACCA
CCCACTCAACCATCCTTACAGGTGCTAAGTGAAGAGCTAGAGTGGCTCAA
CTACTTCCCAGCGGGGTTCAAGCTCAACGTTCCCCTGACGCACACCTTGG
GGTCTCTGACTCTCGTCGGCATGGAGGCCTACGCCTCCATCGTCGGACAG
CTGGCCCAATGGGAGGTGGGCAGTGGGCCCCATGAAGATTTTGTTTGCTG
CACGTCATCGTTTGTTGTTGTTGTTGGTCGCGGTTCGTGGTGGTGGTGTT
GCTGTTGCTGTTGCTGTTGCTGTGCTTTTGCTGTTGCTGTTGCTCTGTTG
TTGCTGTTGTAGTTGCTGTTGTAGGTGCTGTTGGTTGTTGTAGTTGCTGT
TGGTGCTGCCGCTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGATGCT
GCTCTTTCGGTGACCATTGGTTTTTGTGCTTGCTTGGTTTGCACAATGTG
TAATAACCTCTACATACCCCGTCCGGCTAGGAGTTGACGAAACATCCGCG
ATGACATACTTTCCCTTCAGCAATATACGTGCTTATACATCCTTCTATTG
TGTGTCAGGGCGCCGCGATGAAGGCGATAGCGATCTGCGCGGCCGGCGGG
GGCCTCACCACCGCCCTCGCCGTCGCGCACGACATCCTCAGGCTTCTCGC
CCTGCACACGGCCACCGCCCACACCGCCTTCGCCGCCCTTCACAACCTGC
ACAGGTGGGAAAGAAAAGAGGGCGGAATGTTGGTTGTGCGTAAAAGGTAT
ACGGCGGTGAGGCCGGTCGTTATATAAGTCACGTTGTTTTCGTTTTGTCC
TAAGGACTGGCGATGTGTTGACTAGATCCATCAACGATGGTGTCATCTGT
TGGACCTGACACACTGCGGTGCCACGTGAGTGGCGGTGTGAGCAAGGGAG
ACGTGCCATGTAGGGGCAGGGCGAACAGCGTGGTGCACGGAGCGCCCTAG
CCAAATAGACGAAAACGCGTGGTACGCACCTGCAAAACCTCCTTCGCTTT
CGTGAACCGCTATTTGTCCCACCGAGGCTAGAAGCGTGATGTGCCTGCCA
CAGCGTTCTTCCGCGAAACGCTTTGGTGAACCGCTATTACTGCCAGCTAG
GCGAGAAGGCGTGATAAGTATCTGCAACAACCCTTTCGTGAACTGCTATC
TATCCTCTCCGACCGATGTTAAGAATTCCTCCGCGTGCGCGCGTGTGTGT
GTGTTAATTTCTTCCTCCGATATTTACAAAGCTCTCTGCTGGGGTCCCTG
TGGCAGCTGTTCCGGGGCCGCAAGCGGAACGTCTTGAGGTGCCGGGTGGA
CACGTGCATGTACGACGCCTGCCAGCTGCTGCTCGGCACCCTCGTCTTCA
CGGTGTTGTCGTTCCTCACACCCACCATCTCGGTGTACTACACCTTCTTC
TGCATCGTGCAGGCCGTCGCCGTCGGAGGGCAGGTGCGCCCCCCCTCCCC
CCCCCCGCATTGA
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Coding sequence (CDS) from alignment at chr_00:750971..755533-

>Ec-00_000550.1 ID=Ec-00_000550.1|Name=Ec-00_000550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1056bp|location=Sequence derived from alignment at chr_00:750971..755533- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCATGGGAACAAGAAGGGAGTTCGAGACCCGGGGGGTACGCGGAAGAG
AAGAAGCGGGTACCATGCGTCGCAGGCGGCGGGGCCAATAGAGGGGGCGG
GCGCCGTTGCGGGATCGATCGGGGGGGGGGGGGTCAGCATCCCCGGGCGC
GTCCTCCTGGACGGGTGCTGCCTGCTTCTGAGGATTTCGAGTTGGGTGGC
GTTCTTGGTGGTGGCCGTCCTGGAGAGCAAGGTCGTCTGGACGCCCCTGG
GAGATGAGCTGTGGCGTTCGCCCTCCGACGCATCGTTGGTCTGCGCGCAC
CTCGCGGCTCGGCTCAGGGGCGCCCTGTCTCTGCCGCTGCGGCTGAGCAG
GTGCTGGAAGGAGCGGCACCAGCCCGCGGAGAGACGGGTGGAAGGGCTCG
TGGGGCTGAGCCACTGGCTTTTCGGGGTCGCCGCCGACGCCGCCCTTGGC
GTCGTCGCGTGCGCGCTGCTGCTGAGGCACACGGAGGCCGCGGCAAGGGC
TGCTCACCAGGCTCTTCACCTGCTACACGTTGACGTGCTAAGTGAAGAGC
TAGAGTGGCTCAACTACTTCCCAGCGGGGTTCAAGCTCAACGTTCCCCTG
ACGCACACCTTGGGGTCTCTGACTCTCGTCGGCATGGAGGCCTACGCCTC
CATCGTCGGACAGCTGGCCCAATGGGAGGGCGCCGCGATGAAGGCGATAG
CGATCTGCGCGGCCGGCGGGGGCCTCACCACCGCCCTCGCCGTCGCGCAC
GACATCCTCAGGCTTCTCGCCCTGCACACGGCCACCGCCCACACCGCCTT
CGCCGCCCTTCACAACCTGCACAGCTCTCTGCTGGGGTCCCTGTGGCAGC
TGTTCCGGGGCCGCAAGCGGAACGTCTTGAGGTGCCGGGTGGACACGTGC
ATGTACGACGCCTGCCAGCTGCTGCTCGGCACCCTCGTCTTCACGGTGTT
GTCGTTCCTCACACCCACCATCTCGGTGTACTACACCTTCTTCTGCATCG
TGCAGGCCGTCGCCGTCGGAGGGCAGGTGCGCCCCCCCTCCCCCCCCCCG
CATTGA
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Synonyms
The feature 'Ec-00_000550.1' has the following synonyms
Synonym
Esi1124_0001
Esi_1124_0001