Ec-00_000540.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000540.1
Unique NameEc-00_000540.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length70
Homology
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BLAST of Ec-00_000540.1 vs. uniprot
Match: D7FHV2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV2_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 5.920e-43
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 MTSDPSLLNRTHLLGSKGGRGTAAAPSPHAFVHSPQVHMDVVVALMAQTVFVFHSTSPSSRWAFFLTAL 207
            MTSDPSLLNRTHLLGSKGGRGTAAAPSPHAFVHSPQVHMDVVVALMAQTVFVFHSTSPSSRWAFFLTAL
Sbjct:    1 MTSDPSLLNRTHLLGSKGGRGTAAAPSPHAFVHSPQVHMDVVVALMAQTVFVFHSTSPSSRWAFFLTAL 69
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BLAST of Ec-00_000540.1 vs. uniprot
Match: A0A6H5JUJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUJ8_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.960e-32
Identity = 60/69 (86.96%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    1 MTSDPSLLNRTHLLGSKGGRGTAAAPSPHAFVHSPQVHMDVVVALMAQTVFVFHSTSPSSRWAFFLTAL 207
            MTSDPSLLNRTHLL SK GRGTAAA  PHAFVHSPQV MDVV ALMA+TVFV HSTSPS RWAFFLTAL
Sbjct:    1 MTSDPSLLNRTHLLDSKRGRGTAAALPPHAFVHSPQVRMDVV-ALMARTVFVIHSTSPSCRWAFFLTAL 68
The following BLAST results are available for this feature:
BLAST of Ec-00_000540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHV2_ECTSI5.920e-43100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUJ8_9PHAE1.960e-3286.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:746589..746798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length210
Hectar predicted targeting categoryother localisation
Gene idEc-00_000540.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000540Ec-00_000540Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 744994..746828 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000540.1.1Ec-00_000540.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 746589..746798 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000540.1CDS:Ec-00_000540.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 746589..746798 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000540.1Ec-00_000540.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 746589..746798 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000540.1 ID=Ec-00_000540.1|Name=Ec-00_000540.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=70bp
MTSDPSLLNRTHLLGSKGGRGTAAAPSPHAFVHSPQVHMDVVVALMAQTV
FVFHSTSPSSRWAFFLTAL*
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spliced messenger RNA

>Ec-00_000540.1 ID=Ec-00_000540.1|Name=Ec-00_000540.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=210bp|location=Sequence derived from alignment at chr_00:746589..746798- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTCGGACCCTTCTCTGTTGAACCGTACCCATTTGCTTGGTTCCAA
AGGTGGGAGGGGAACGGCAGCAGCGCCGTCCCCGCATGCTTTCGTCCATT
CGCCCCAGGTACATATGGATGTTGTTGTTGCCTTGATGGCCCAAACCGTG
TTTGTTTTTCATTCAACGTCTCCCTCTAGTCGCTGGGCATTTTTTCTCAC
CGCTTTGTAG
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protein sequence of Ec-00_000540.1

>Ec-00_000540.1 ID=Ec-00_000540.1|Name=Ec-00_000540.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=70bp
MTSDPSLLNRTHLLGSKGGRGTAAAPSPHAFVHSPQVHMDVVVALMAQTV
FVFHSTSPSSRWAFFLTAL*
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mRNA from alignment at chr_00:746589..746798-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000540.1 ID=Ec-00_000540.1|Name=Ec-00_000540.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=210bp|location=Sequence derived from alignment at chr_00:746589..746798- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACGTCGGACCCTTCTCTGTTGAACCGTACCCATTTGCTTGGTTCCAA
AGGTGGGAGGGGAACGGCAGCAGCGCCGTCCCCGCATGCTTTCGTCCATT
CGCCCCAGGTACATATGGATGTTGTTGTTGCCTTGATGGCCCAAACCGTG
TTTGTTTTTCATTCAACGTCTCCCTCTAGTCGCTGGGCATTTTTTCTCAC
CGCTTTGTAG
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Coding sequence (CDS) from alignment at chr_00:746589..746798-

>Ec-00_000540.1 ID=Ec-00_000540.1|Name=Ec-00_000540.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=210bp|location=Sequence derived from alignment at chr_00:746589..746798- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACGTCGGACCCTTCTCTGTTGAACCGTACCCATTTGCTTGGTTCCAA
AGGTGGGAGGGGAACGGCAGCAGCGCCGTCCCCGCATGCTTTCGTCCATT
CGCCCCAGGTACATATGGATGTTGTTGTTGCCTTGATGGCCCAAACCGTG
TTTGTTTTTCATTCAACGTCTCCCTCTAGTCGCTGGGCATTTTTTCTCAC
CGCTTTGTAG
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Synonyms
The feature 'Ec-00_000540.1' has the following synonyms
Synonym
Esi1123_0001
Esi_1123_0001