Ec-00_000500.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000500.1
Unique NameEc-00_000500.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length79
Homology
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BLAST of Ec-00_000500.1 vs. uniprot
Match: D7FHU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU7_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 8.460e-47
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:    1 MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAGWHRTEGGGT 234
            MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAGWHRTEGGGT
Sbjct:    1 MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAGWHRTEGGGT 78
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BLAST of Ec-00_000500.1 vs. uniprot
Match: A0A6H5JR72_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR72_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 3.290e-38
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    1 MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAGWHRTEGGGT 234
            MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAG HR +GGGT
Sbjct:  787 MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAGLHRAKGGGT 864
The following BLAST results are available for this feature:
BLAST of Ec-00_000500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHU7_ECTSI8.460e-47100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JR72_9PHAE3.290e-3896.15Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:666368..666906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length237
Hectar predicted targeting categoryother localisation
Gene idEc-00_000500.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000500Ec-00_000500Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 666368..668454 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000500.1.1Ec-00_000500.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 666368..666418 +
Ec-00_000500.1.2Ec-00_000500.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 666721..666906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000500.1CDS:Ec-00_000500.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 666368..666418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000500.1Ec-00_000500.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 666368..666906 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000500.1 ID=Ec-00_000500.1|Name=Ec-00_000500.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=79bp
MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLEL
LNARMDGTARGFAKSFGAGWHRTEGGGT*
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spliced messenger RNA

>Ec-00_000500.1 ID=Ec-00_000500.1|Name=Ec-00_000500.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=237bp|location=Sequence derived from alignment at chr_00:666368..666906+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCGAGCGCTCCGGAGCTTGCCCTTAACGGCCAGCAAGCCGTTGGA
GGACGCGGCTCGTGTGTGCAACTCCCTCTTGAGAACCAACGCCCGAGCTC
TGGGTGACAGCCGTTTATCGCTTTCGCGGTCTGTCACCCAGCTTGAGCTG
TTGAACGCTCGCATGGACGGTACCGCCAGAGGTTTCGCGAAATCCTTCGG
TGCGGGTTGGCATCGCACGGAGGGGGGGGGCACCTAG
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protein sequence of Ec-00_000500.1

>Ec-00_000500.1 ID=Ec-00_000500.1|Name=Ec-00_000500.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=79bp
MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLEL
LNARMDGTARGFAKSFGAGWHRTEGGGT*
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mRNA from alignment at chr_00:666368..666906+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000500.1 ID=Ec-00_000500.1|Name=Ec-00_000500.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=539bp|location=Sequence derived from alignment at chr_00:666368..666906+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGGCGAGCGCTCCGGAGCTTGCCCTTAACGGCCAGCAAGCCGTTGGA
GGTACGGCTATCCACGACTCTTTGTGATGCTCTTTTCTCGGAGGGGTGCG
GTGGAGTGAGAGGGCGATTATGTCCCCTCTTTTTCTCGTGCTTCGTTGAC
GTTCAAAGGCCGCTTGACCTAGCATTTTCGGCCGGCTTATGAAATGTTTC
GACCACGCTGGGACCCCGCACGATTCGGTTTGGCTACTGGCTACAAAGTA
CCTCGGTGCTTTCGAGCGTTTGACTTTGACGTGTTTGTTTCCCTTGTCTT
GCAATTTGACCCCTCGCCGCCCTTCCCACCTCCCGTCCTCCCCTTCGAAC
CAGGACGCGGCTCGTGTGTGCAACTCCCTCTTGAGAACCAACGCCCGAGC
TCTGGGTGACAGCCGTTTATCGCTTTCGCGGTCTGTCACCCAGCTTGAGC
TGTTGAACGCTCGCATGGACGGTACCGCCAGAGGTTTCGCGAAATCCTTC
GGTGCGGGTTGGCATCGCACGGAGGGGGGGGGCACCTAG
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Coding sequence (CDS) from alignment at chr_00:666368..666906+

>Ec-00_000500.1 ID=Ec-00_000500.1|Name=Ec-00_000500.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=237bp|location=Sequence derived from alignment at chr_00:666368..666906+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGGCGAGCGCTCCGGAGCTTGCCCTTAACGGCCAGCAAGCCGTTGGA
GGACGCGGCTCGTGTGTGCAACTCCCTCTTGAGAACCAACGCCCGAGCTC
TGGGTGACAGCCGTTTATCGCTTTCGCGGTCTGTCACCCAGCTTGAGCTG
TTGAACGCTCGCATGGACGGTACCGCCAGAGGTTTCGCGAAATCCTTCGG
TGCGGGTTGGCATCGCACGGAGGGGGGGGGCACCTAG
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Synonyms
The feature 'Ec-00_000500.1' has the following synonyms
Synonym
Esi1109_0001
Esi_1109_0001