Ec-00_000430.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000430.1
Unique NameEc-00_000430.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length95
Homology
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BLAST of Ec-00_000430.1 vs. uniprot
Match: D7FHU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU4_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 2.800e-65
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 
Query:  427 MVVGRRRSFGERENKKDGLVTDIYDEPARGMPNLWCMTVNNTCVRLVGRCGWGTWRIANGVDYDVVAAWDAKDGYSTPATRCQTLQDGKLRSIG 708
            MVVGRRRSFGERENKKDGLVTDIYDEPARGMPNLWCMTVNNTCVRLVGRCGWGTWRIANGVDYDVVAAWDAKDGYSTPATRCQTLQDGKLRSIG
Sbjct:    1 MVVGRRRSFGERENKKDGLVTDIYDEPARGMPNLWCMTVNNTCVRLVGRCGWGTWRIANGVDYDVVAAWDAKDGYSTPATRCQTLQDGKLRSIG 94
The following BLAST results are available for this feature:
BLAST of Ec-00_000430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHU4_ECTSI2.800e-65100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:633893..636569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length715
Hectar predicted targeting categoryother localisation
Gene idEc-00_000430.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000430Ec-00_000430Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 633793..639052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000430.1Ec-00_000430.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 635265..636569 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000430.1.1Ec-00_000430.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 633893..633980 +
Ec-00_000430.1.2Ec-00_000430.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 634240..634390 +
Ec-00_000430.1.3Ec-00_000430.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 634799..634873 +
Ec-00_000430.1.4Ec-00_000430.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 635149..635301 +
Ec-00_000430.1.5Ec-00_000430.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 635557..635777 +
Ec-00_000430.1.6Ec-00_000430.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 636543..636569 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0004305UTR:Ec-00_000430.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 633893..633980 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000430.1CDS:Ec-00_000430.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 635265..635301 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000430.1 ID=Ec-00_000430.1|Name=Ec-00_000430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=95bp
MVVGRRRSFGERENKKDGLVTDIYDEPARGMPNLWCMTVNNTCVRLVGRC
GWGTWRIANGVDYDVVAAWDAKDGYSTPATRCQTLQDGKLRSIG*
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spliced messenger RNA

>Ec-00_000430.1 ID=Ec-00_000430.1|Name=Ec-00_000430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=715bp|location=Sequence derived from alignment at chr_00:633893..636569+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GTGCCTCAGCAGACACGCGCCACGGCGAGCGCCCGTGCCCTCTCGTTTGT
TGTTGCTGCTGGTCGGACAGCTGGATCTGGCGAAAACGGTAGTCCAAAAG
CACGCCACGTGCGGAAACCCCACCCATCACCTGGTCCCTTTATCTGCGCA
GCTGGTTCACGCGCTTGGATGAGGGGATTCGCCCCCTGCCGATCGGCGGA
GGGGAAACGATGAACCAGCGTCAGTGGGAAGCATAGCGGGCACCGAGTAC
ACCGACACGAGACGATAGAACACGAACAGGGGCACGCGGATTTCCTGCTG
AGTGGTGACAACTGAAGCGAGCAGCGCCCGAACGTCCACCATCGTTAGCA
GTCCCCCTTTCGGCGCGGCTTGGATCGCGCGCTTGGATGAACCCTTCTGC
TGCTGATCAACACGAGGGGCCGTTGTTGTTATGGTTGTGGGCAGGAGGAG
ATCCTTTGGCGAAAGAGAAAATAAAAAGGATGGGCTGGTGACGGATATCT
ACGACGAGCCGGCGAGGGGAATGCCAAACTTGTGGTGCATGACGGTCAAC
AACACATGTGTGAGATTGGTGGGGAGGTGTGGCTGGGGGACGTGGCGGAT
AGCTAACGGGGTGGACTACGATGTGGTAGCCGCTTGGGATGCGAAGGATG
GATACTCAACACCTGCAACACGGTGCCAAACCTTGCAAGATGGGAAACTC
CGAAGTATCGGATGA
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protein sequence of Ec-00_000430.1

>Ec-00_000430.1 ID=Ec-00_000430.1|Name=Ec-00_000430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=95bp
MVVGRRRSFGERENKKDGLVTDIYDEPARGMPNLWCMTVNNTCVRLVGRC
GWGTWRIANGVDYDVVAAWDAKDGYSTPATRCQTLQDGKLRSIG*
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mRNA from alignment at chr_00:633893..636569+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000430.1 ID=Ec-00_000430.1|Name=Ec-00_000430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2677bp|location=Sequence derived from alignment at chr_00:633893..636569+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GTGCCTCAGCAGACACGCGCCACGGCGAGCGCCCGTGCCCTCTCGTTTGT
TGTTGCTGCTGGTCGGACAGCTGGATCTGGCGAAAACGGTGAGAGCCCTT
CTTTCATTTTATACCTTGTGTGTCGTTGAAGAGCAGAGAACTAAGAAGAC
CAACGACGCCGACGGTGTCATGGTTCTTCATCACGCCTGTCGCGGGGTTT
TTCGAACTGTTCGTGTGCCGTTTTCGGCGCTGCTGTTTTGTACACGTCAA
GCTTTGGGAGAGACAGCCAGATGTACTCTTGTTGGTTTGTATGTAAAGCT
AACTCCCCACCCATGCCCCGTTTCTCCACACTCTCTCGCACGCACAGGTA
GTCCAAAAGCACGCCACGTGCGGAAACCCCACCCATCACCTGGTCCCTTT
ATCTGCGCAGCTGGTTCACGCGCTTGGATGAGGGGATTCGCCCCCTGCCG
ATCGGCGGAGGGGAAACGATGAACCAGCGTCAGTGGGAAGCATAGCGGGT
GAGAGTCGGGAGGCGCAAGCGGCCGCACGGGCACGCGCCTATTAACCCAA
AGGACACTTGTTGGCCTCGGAAAGCTTGCTGTCCCTTTGTTGAGTTGGGG
CACCTGAATGCCTCCTCAAACAATATTTCGTCCACCTCTGCGTTGACCCG
TAGGAAAACACCACGCCTCCGTCTGGCTGTAGCTAGCTCAAAGTCTGATA
ATAGCTTATAGTTTTCGTCCGTGGCTCATTATTCGTGTGGTTCTGCAAAG
TCATAGTCGGCGAGCTCTTCCTTGCAACCGAAACCATAAGCGTTCCGAGC
AACTGGCCGTTTTCTGACATGTTTGGTACCAAGTAGCTCCTATTTTCACA
ATGCTTTCCCCGATTTGCCACTGCGTTCGTTCGCCTGTGCCCTCTCTCAC
AGGCAGGCACCGAGTACACCGACACGAGACGATAGAACACGAACAGGGGC
ACGCGGATTTCCTGCTGAGTGGTGACAACTGGTGAGCAAGTGCTTTGCGG
TGTGTCTAGTGTGTTTGTTTCAAGAGGACAGAGAGAGAGAGGTAACATGC
AGGAGAGATGTATGTATCAATCAACGAGAGGGGGTCGAGTAGAAGAGGAA
GCATACTGCCTTCCTCGATCCTATCGTCGTCGCCTGGTTTCAGGTTTGGC
TTGCTTGTCGCACGGACTTGCGCGCGCTGTCCTCATATCCAAAGTTTGAA
ACAAAACCTCTCTCTCTGTCGATTACCCTCCCTCCCCTCCGCCGGCGGGT
TCGCAGAAGCGAGCAGCGCCCGAACGTCCACCATCGTTAGCAGTCCCCCT
TTCGGCGCGGCTTGGATCGCGCGCTTGGATGAACCCTTCTGCTGCTGATC
AACACGAGGGGCCGTTGTTGTTATGGTTGTGGGCAGGAGGAGATCCTTTG
GCGAAAGAGGTGAGGTACTTGACGAAATGTCCGTCGCGCGTGGTTTGGCG
TTTCATCTTTTTCCAGTACACGCGCGGTGTTTCGAGAAACAACATTCGCA
CACTCGTCCTAAACTCTAGCACGTGTCGGGGCTGCGGCCGTTTTCAGTGC
CAACGTGAAAGCATGCTTTCTCCCGTGGATTCCCGATGTGTCTAGAAGCA
ACATACATACACTCGCCCTAAACTCTAGGTCCGCCCCACTCAATCGCGTA
ACTTCCAACACAAGAAAATAAAAAGGATGGGCTGGTGACGGATATCTACG
ACGAGCCGGCGAGGGGAATGCCAAACTTGTGGTGCATGACGGTCAACAAC
ACATGTGTGAGATTGGTGGGGAGGTGTGGCTGGGGGACGTGGCGGATAGC
TAACGGGGTGGACTACGATGTGGTAGCCGCTTGGGATGCGAAGGATGGAT
ACTCAACACCTGCAACACGGTGCCAAACCTTGCAAGTGAGAAATATATAA
TCGCAAATTTCAGAAAAGGCTTTTTTTTTGCCGAAACAACGGGGAAATAA
TCAATCATCCCCGACCAGGCCCACGAAAGGCACGGGAGTAGAGACAAATG
CGCACACACAACCCCGTTCTCGAAGATCTGACATACAGGGGAATAAGAAA
GCGCTGTTCGCATAGAAAAGGAGAAAGGACCTTTCCAGACCTTGGTTGGT
CCCGGCTCGGCGTTTTGTCCCGGTGCCGGTAACTTTATCCCAAGCCAATT
CGCGTGCGTTGTACGTGTCTCGCAACAAGATCCGCAAGCGCTGATGTCGT
GTATGTGCAGTTTTGACGATTACAAGAACGCGTGTGCTTGGTTTTAATTT
TCGATTGTGTTGAAAAGCTTTGTGTGCTGTTCTGTTATTGCCTCCTCCTT
CCAAGTCGAGATCGTACACACCCATGTGCTGGTCCTGATCCTGGATCGGA
GCTTCCAATTCTGTTTCGACGGCACCTACCGTGGATGTCAGTGTGCGTGT
GTAAACTCCGGTCTGGTACAACGGATTTGACTTCCTTGGTCTCCCTAGGG
CATGGCGCGTGTGTAGCTTATGCGCGTGTATTCAACACGTCTCACGGCCA
GCAAGCGGAAGGACGTTCTTGTTTCATGCGTGGGTGCTGAGCGCACGCCT
TTTTTCTCTATCGAAAACGTGTGTTTCCGTACCACACGCGTTGCTCTTCA
CAGCAGACTTTCCTGACAACACACACGACATTGCAAATGATAAAAACCAG
GATGGGAAACTCCGAAGTATCGGATGA
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Coding sequence (CDS) from alignment at chr_00:633893..636569+

>Ec-00_000430.1 ID=Ec-00_000430.1|Name=Ec-00_000430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=285bp|location=Sequence derived from alignment at chr_00:633893..636569+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTTGTGGGCAGGAGGAGATCCTTTGGCGAAAGAGAAAATAAAAAGGA
TGGGCTGGTGACGGATATCTACGACGAGCCGGCGAGGGGAATGCCAAACT
TGTGGTGCATGACGGTCAACAACACATGTGTGAGATTGGTGGGGAGGTGT
GGCTGGGGGACGTGGCGGATAGCTAACGGGGTGGACTACGATGTGGTAGC
CGCTTGGGATGCGAAGGATGGATACTCAACACCTGCAACACGGTGCCAAA
CCTTGCAAGATGGGAAACTCCGAAGTATCGGATGA
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Synonyms
The feature 'Ec-00_000430.1' has the following synonyms
Synonym
Esi1102_0001
Esi_1102_0001