Ec-00_000400.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000400.1
Unique NameEc-00_000400.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length170
Homology
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BLAST of Ec-00_000400.1 vs. uniprot
Match: D7FHU2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU2_ECTSI)

HSP 1 Score: 346 bits (888), Expect = 9.330e-121
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1 
Query:    1 MAATRGNVFSCSSSSQHRIEALKLLEWAEPIRCVCYRNISDVALRGVLSDDSLRQVEMKLTLEQHGLVVEYGSRGGGLVSPKKALHLATGVDHFLVAHRQGDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASVTTAVPYLGAKKRFSDDIAVWVIQRLTSYETPWRR 507
            MAATRGNVFSCSSSSQHRIEALKLLEWAEPIRCVCYRNISDVALRGVLSDDSLRQVEMKLTLEQHGLVVEYGSRGGGLVSPKKALHLATGVDHFLVAHRQGDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASVTTAVPYLGAKKRFSDDIAVWVIQRLTSYETPWRR
Sbjct:    1 MAATRGNVFSCSSSSQHRIEALKLLEWAEPIRCVCYRNISDVALRGVLSDDSLRQVEMKLTLEQHGLVVEYGSRGGGLVSPKKALHLATGVDHFLVAHRQGDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASVTTAVPYLGAKKRFSDDIAVWVIQRLTSYETPWRR 169
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BLAST of Ec-00_000400.1 vs. uniprot
Match: A0A6H5J8R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8R0_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.200e-56
Identity = 88/119 (73.95%), Postives = 100/119 (84.03%), Query Frame = 1 
Query:  121 DVALRGVLSDDSLRQVEMKLTLEQHGLVVEYGSRGGGLVSPKKALHLATGVDHFLVAHRQGDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASVTTAVPYLGAKKRFSDDIAVWVIQR 477
            D++   V   DS+RQVEMKLTLEQHGLVVEYG+RGGG VSPKKALHL TGVD+ L+AHRQGD+FT N+KVIPQKFDG  RT EG+H PNTAAASV   VPY+GAKKR SD++AVW IQR
Sbjct:   16 DLSSLVVNRSDSMRQVEMKLTLEQHGLVVEYGTRGGGQVSPKKALHLTTGVDYLLIAHRQGDDFTYNDKVIPQKFDGCQRTDEGRHTPNTAAASVMNGVPYVGAKKRLSDNVAVWAIQR 134
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BLAST of Ec-00_000400.1 vs. uniprot
Match: D7FXI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI3_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 3.000e-33
Identity = 63/99 (63.64%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:  217 SRGGGLVSPKKALHLATGVDHFLV---------------AHRQGDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASVTTAVPYLGAKKRFSDDIAVWV 468
            S+G    +P + + L  G D  L                + RQGDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASV TAVPYLGAKKRFSDD+AVWV
Sbjct:   27 SKGFMATTPPQIMFLDIGEDEHLAQDMVDNKLRAIYIDGSRRQGDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASVMTAVPYLGAKKRFSDDVAVWV 125
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BLAST of Ec-00_000400.1 vs. uniprot
Match: A0A6H5JK41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK41_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.090e-15
Identity = 47/125 (37.60%), Postives = 68/125 (54.40%), Query Frame = 1 
Query:  151 DSLRQVEMKLTLEQHGLVVEYGSRGGGLVSPKKALHLATGVDHFLVAHRQ------GDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAAS--------VTTAVPYLGAKKRFSDDIAVWVIQRLT 483
            + L+Q  + + +E HGLVVEYGSRGGGL +  K   +   +DH++VAH        G NFTCN+ V PQ F G L  S G  D +T + +        +   VP+ G  + + D++  + IQR T
Sbjct:  700 EHLQQPGLGMVVEDHGLVVEYGSRGGGLTAESKKKFIGGALDHYIVAHHNASGDGGGMNFTCNDTVTPQSFTGKL--SAGSSDGSTWSTASGRRIPSPLMGDVPHKGVTRGYHDNVVQFAIQRWT 822
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BLAST of Ec-00_000400.1 vs. uniprot
Match: D7FZ29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ29_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 4.680e-15
Identity = 47/125 (37.60%), Postives = 67/125 (53.60%), Query Frame = 1 
Query:  151 DSLRQVEMKLTLEQHGLVVEYGSRGGGLVSPKKALHLATGVDHFLVAHRQGD------NFTCNEKVIPQKFDGMLRTSEGKHDPNTAAAS--------VTTAVPYLGAKKRFSDDIAVWVIQRLT 483
            + L+Q  + + +E HGLVVEYGSRGGGL +  K   +   +DH++VAH  G       NFTCN+ V PQ F G  R S G  D +T + +        +   VP  G  + + D++  + IQR T
Sbjct:  199 EHLQQPGLGMVVEDHGLVVEYGSRGGGLTAESKKKFIGGALDHYIVAHHNGCGDGGGMNFTCNDTVTPQSFTG--RRSAGSSDGSTWSTASGRRIPSPLMGDVPRKGVTRGYHDNVVQFAIQRWT 321
The following BLAST results are available for this feature:
BLAST of Ec-00_000400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FHU2_ECTSI9.330e-121100.00Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5J8R0_9PHAE1.200e-5673.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXI3_ECTSI3.000e-3363.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JK41_9PHAE1.090e-1537.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ29_ECTSI4.680e-1537.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:623026..625748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length510
Hectar predicted targeting categoryother localisation
Gene idEc-00_000400.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000400Ec-00_000400Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 623026..625748 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000400.1.1Ec-00_000400.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 623026..623176 +
Ec-00_000400.1.2Ec-00_000400.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 625082..625406 +
Ec-00_000400.1.3Ec-00_000400.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 625715..625748 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000400.1CDS:Ec-00_000400.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 623026..623176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000400.1Ec-00_000400.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 623026..625748 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000400.1 ID=Ec-00_000400.1|Name=Ec-00_000400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=170bp
MAATRGNVFSCSSSSQHRIEALKLLEWAEPIRCVCYRNISDVALRGVLSD
DSLRQVEMKLTLEQHGLVVEYGSRGGGLVSPKKALHLATGVDHFLVAHRQ
GDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASVTTAVPYLGAKKRFSD
DIAVWVIQRLTSYETPWRR*
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spliced messenger RNA

>Ec-00_000400.1 ID=Ec-00_000400.1|Name=Ec-00_000400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=510bp|location=Sequence derived from alignment at chr_00:623026..625748+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCAACACGTGGTAACGTGTTCTCCTGTTCTTCTTCTTCACAACA
CAGGATCGAAGCTCTCAAGTTGTTGGAGTGGGCGGAACCCATCCGTTGCG
TGTGCTATCGTAACATCAGCGACGTGGCCTTGAGGGGGGTTCTGTCTGAC
GACTCCTTGAGGCAGGTGGAGATGAAACTCACCCTCGAACAGCATGGCTT
GGTCGTGGAGTACGGTTCCAGGGGAGGTGGCCTGGTGTCTCCGAAGAAGG
CGCTGCATCTTGCAACCGGTGTCGATCACTTCCTCGTCGCACACAGGCAA
GGCGACAACTTCACGTGCAACGAGAAGGTGATACCGCAAAAGTTCGATGG
CATGCTGCGCACATCCGAGGGCAAGCACGACCCCAACACCGCCGCTGCAT
CGGTGACGACTGCGGTCCCTTACCTCGGGGCTAAGAAGCGCTTCTCCGAC
GACATCGCCGTCTGGGTGATTCAGCGGTTAACTAGTTACGAGACACCGTG
GCGACGTTGA
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protein sequence of Ec-00_000400.1

>Ec-00_000400.1 ID=Ec-00_000400.1|Name=Ec-00_000400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=170bp
MAATRGNVFSCSSSSQHRIEALKLLEWAEPIRCVCYRNISDVALRGVLSD
DSLRQVEMKLTLEQHGLVVEYGSRGGGLVSPKKALHLATGVDHFLVAHRQ
GDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASVTTAVPYLGAKKRFSD
DIAVWVIQRLTSYETPWRR*
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mRNA from alignment at chr_00:623026..625748+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000400.1 ID=Ec-00_000400.1|Name=Ec-00_000400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2723bp|location=Sequence derived from alignment at chr_00:623026..625748+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCTGCAACACGTGGTAACGTGTTCTCCTGTTCTTCTTCTTCACAACA
CAGGATCGAAGCTCTCAAGTTGTTGGAGTGGGCGGAACCCATCCGTTGCG
TGTGCTATCGTAACATCAGCGACGTGGCCTTGAGGGGGGTTCTGTCTGAC
GGTGAGTAGATAGGGTTTACCCAAAAACTACCAAAGCCGGACGCAAGTCA
TTGGGGGGATTTATTTGTCGTTGTTCGCGTTGACTCAAAACTACAGTAGT
AGTCTAGACCATAAATTTAGTATTTTATTTTTATTTTTTTTTGTTCTTCA
CTTCAAATCAGCGCTCACAGCACTAGTGCCGTTTATTCCAACCCGTGGTC
ACACAGAAGAGCTCACTCTACCCTCCCCTCCTGCGGTACTTCGCCTTCAA
TTTTTAATGCGAGAAGAGTTCAGCACTCTCTTCCCTCTGTGTACACACGA
ACTAGCGCTATCCACTTGGCCAGGAGCGGAAGCGAGAGAAAAACTCACTT
TGCAAGAAAAGCTCGCCTACGCCGGGATTCGAACCCCTGACCTGACCTAC
CTCTAGAAGGTTACGAGGCTACCAACTAGACCACCGGGGCGTCCGGCATA
CATAGTATGTAGGCTACTTGCCCATGGCACCGCCGTGAGCGGCATGTATG
GTGTTCCAGAAGACACTCAAACGTGTCGGAACCAATCTTCTTCTTGTAGA
TAACAACAGGCACTTCATTATAGTATTACACCATACCCACACTGAATGAA
GTCTAGACGACACGATGTAGTGTCGTGTCGGCAAGAAATTGTCCTGTTTG
TCCTTCGGTTTTAACTTCGCCTGAAATGTACCTACCGGCCCGCTCGGTGG
GTTTAGTGCTTGGTCTAGTGGCGTCGAAACCGCCAGTGGCAAAGTCGATT
GTTCGAATCCCCCATGGCGTGGAAAATGTACAGCTAGCTACTCCGCGGGT
GAGAGCGATAAACTCCGACGTCAGGACCGTCTCCTCCAAATTGGCTGGCT
GGGCCCCTTTCACGATAAAAACGAACATTCAACACGCACAGCCGGTCGCC
CCGGTGGTCAAGTGGTAACTTTAAAACCGTTCGTCGCAGAGGTCGTGAGT
TCGATTCCCCATCATGTGGAATAAGAACTAACTTGTGCGTGCGTGAGAAC
GAAATACAGGTCGAAGCCCCGTGAGTGAGTAGATATTACCAATTCTTCGA
CGTTAGCACCGTTGCTGTACCTTTCTCGCGACACAACACAAATAACTTAG
AACGCACATGAAGACGGTAGGGCACGAACAATAAAAGTAGAACAAGAACA
AACAAAGTTTGTATGTGGTATGTGATTTCCTCCGGTCTGTCTGTGTGAGT
GTAGAGGTAAAAAAAATACACGGGTGATAAGTAACTGTAGCAACATGCAC
CGAACGAGAGTAACGTACGGAGTGGAGATACTTGGTCGGCGCGAACCCAG
CACGGAACCCTCCGGCGTTGTAGGTGGGTGTGGGAATTGTTCTCCTTTTT
GTTTAATTTGGTCGGTATTCTCGAGGCTCTCTTTCTCCCTCGATGCGGTA
GCTGGTCTTTCTTTCTATCATTTTGTTTTCTCTGGAGTTCTTGTACCCCA
TTTTTTTTGTTTTGTTTTCTTTCGCGGTGTCGTGTGTGCCGGGTTTTGAG
ACGAGCTCCGCATTTTTTTGTGGGTTAGAGCTAATGTGAGAAAAACGACA
ACAAACAAAAAAAAACGTATCCCCACCAAGATTGGACGGTCGCTGTAATA
AATAGGACGAAAACAACAACACATACATTAATATATTTATTTGCGGACCC
CGCGGAGGTACGTGCGCCTCTCCGCTTCGAAGATTCGGCCCGAGCACTCA
CTATATTTTGGAGCGAAAGTCAGTCGGGAGGACGATTTCGAATTTGTGGG
TATGTTTCTCCTTCGTTCGTGAAACACATCCTCCTCCTCCAGAAGAAGAA
TCGTTACCGCTGAGCGGCGCGAAGCATGTGCGTCATCCTCCCCTTCGTTG
ACTATTTTCTCTCGTGTCCTTCGTTCGGTCTGTAATCGTTTGTCGTAATC
TTTCAGACTCCTTGAGGCAGGTGGAGATGAAACTCACCCTCGAACAGCAT
GGCTTGGTCGTGGAGTACGGTTCCAGGGGAGGTGGCCTGGTGTCTCCGAA
GAAGGCGCTGCATCTTGCAACCGGTGTCGATCACTTCCTCGTCGCACACA
GGCAAGGCGACAACTTCACGTGCAACGAGAAGGTGATACCGCAAAAGTTC
GATGGCATGCTGCGCACATCCGAGGGCAAGCACGACCCCAACACCGCCGC
TGCATCGGTGACGACTGCGGTCCCTTACCTCGGGGCTAAGAAGCGCTTCT
CCGACGACATCGCCGTCTGGGTGATTCAGCGGTAGGTGCATAATAGGAGA
CTTCCCTCCGTGCTTTTTTCCTCTGTTCAAGCCCGGAGTAAAGTGCAATG
CTGTCAAGCTTTTATTGGCGTTCGAATCATGGGTGACCTAGAATAGTTAC
AGGGCAGGGAATGTTGACGCCGACGCAAGAGTAGTACCACTTCCGAGACA
AGTGTCAGGCTGCGTCACCTTATTTTTTCTTGTTTTTCGGCGACTGTGAT
GCACCGGCAAACACAGCTGCTCCAAACGTATCCTACGTGCTCAAAACACG
CGCTGTCTGTCTGTCTTTTGCCGCTGCCCCCTCATTCAGGTTAACTAGTT
ACGAGACACCGTGGCGACGTTGA
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Coding sequence (CDS) from alignment at chr_00:623026..625748+

>Ec-00_000400.1 ID=Ec-00_000400.1|Name=Ec-00_000400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=510bp|location=Sequence derived from alignment at chr_00:623026..625748+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCTGCAACACGTGGTAACGTGTTCTCCTGTTCTTCTTCTTCACAACA
CAGGATCGAAGCTCTCAAGTTGTTGGAGTGGGCGGAACCCATCCGTTGCG
TGTGCTATCGTAACATCAGCGACGTGGCCTTGAGGGGGGTTCTGTCTGAC
GACTCCTTGAGGCAGGTGGAGATGAAACTCACCCTCGAACAGCATGGCTT
GGTCGTGGAGTACGGTTCCAGGGGAGGTGGCCTGGTGTCTCCGAAGAAGG
CGCTGCATCTTGCAACCGGTGTCGATCACTTCCTCGTCGCACACAGGCAA
GGCGACAACTTCACGTGCAACGAGAAGGTGATACCGCAAAAGTTCGATGG
CATGCTGCGCACATCCGAGGGCAAGCACGACCCCAACACCGCCGCTGCAT
CGGTGACGACTGCGGTCCCTTACCTCGGGGCTAAGAAGCGCTTCTCCGAC
GACATCGCCGTCTGGGTGATTCAGCGGTTAACTAGTTACGAGACACCGTG
GCGACGTTGA
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Synonyms
The feature 'Ec-00_000400.1' has the following synonyms
Synonym
Esi1100_0002
Esi_1100_0002