Ec-00_000390.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000390.1
Unique NameEc-00_000390.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length286
Homology
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BLAST of Ec-00_000390.1 vs. uniprot
Match: D7FHP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHP0_ECTSI)

HSP 1 Score: 482 bits (1241), Expect = 1.570e-170
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 1 
Query:   34 MELSTFGDATVDDMLKLVQDREALFENMMSGPGIPATKFPRRGKPRSVVLTLVRPGGXXXXXXXXXXXXXXXXXXXXXXGVTSFSSTASPSMFGGSEEVSPASSFSSSVGRGRQRGITSSFGRTRFPAERDLFSKPSYKRSFRSQPHQHXXXXXXQGPTSLKGVLDLELEWNRQRGRKGSLRLGEVIEAIAGIDSQILRPVCEELRRRAASVGESRVGEGGEREEEEDTFVSLRTNRRTLDLKFSTVPIRNRFMLAFKTLAWETAAARAGSTSGRGSRPVGSSHF 888
            MELSTFGDATVDDMLKLVQDREALFENMMSGPGIPATKFPRRGKPRSVVLTLVRPGGXXXXXXXXXXXXXXXXXXXXXXGVTSFSSTASPSMFGGSEEVSPASSFSSSVGRGRQRGITSSFGRTRFPAERDLFSKPSYKRSFRSQPHQHXXXXXXQGPTSLKGVLDLELEWNRQRGRKGSLRLGEVIEAIAGIDSQILRPVCEELRRRAASVGESRVGEGGEREEEEDTFVSLRTNRRTLDLKFSTVPIRNRFMLAFKTLAWETAAARAGSTSGRGSRPVGSSHF
Sbjct:    1 MELSTFGDATVDDMLKLVQDREALFENMMSGPGIPATKFPRRGKPRSVVLTLVRPGGXXXXXXXXXXXXXXXXXXXXXXGVTSFSSTASPSMFGGSEEVSPASSFSSSVGRGRQRGITSSFGRTRFPAERDLFSKPSYKRSFRSQPHQHXXXXXXQGPTSLKGVLDLELEWNRQRGRKGSLRLGEVIEAIAGIDSQILRPVCEELRRRAASVGESRVGEGGEREEEEDTFVSLRTNRRTLDLKFSTVPIRNRFMLAFKTLAWETAAARAGSTSGRGSRPVGSSHF 285
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BLAST of Ec-00_000390.1 vs. uniprot
Match: A0A6H5KDH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDH9_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 4.300e-45
Identity = 84/90 (93.33%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:  619 QILRPVCEELRRRAASVGESRVGEGGEREEEEDTFVSLRTNRRTLDLKFSTVPIRNRFMLAFKTLAWETAAARAGSTSGRGSRPVGSSHF 888
            QILRPVCEELRRRAASVGESR GEGG  EEE DTFVSLRTNRRTLDLKFSTVPIRNRFMLAFKTLAWETAAA AGST GRGSRPVGSSHF
Sbjct:    4 QILRPVCEELRRRAASVGESRAGEGGAGEEE-DTFVSLRTNRRTLDLKFSTVPIRNRFMLAFKTLAWETAAAEAGSTRGRGSRPVGSSHF 92
The following BLAST results are available for this feature:
BLAST of Ec-00_000390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHP0_ECTSI1.570e-170100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDH9_9PHAE4.300e-4593.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:605760..610110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length892
Hectar predicted targeting categoryother localisation
Gene idEc-00_000390.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000390Ec-00_000390Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 605760..610110 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000390.1Ec-00_000390.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 605794..610110 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000390.1.1Ec-00_000390.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 605760..605850 +
Ec-00_000390.1.2Ec-00_000390.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 607011..607335 +
Ec-00_000390.1.3Ec-00_000390.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 608240..608445 +
Ec-00_000390.1.4Ec-00_000390.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 609145..609305 +
Ec-00_000390.1.5Ec-00_000390.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 610002..610110 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0003905UTR:Ec-00_000390.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 605760..605793 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000390.1CDS:Ec-00_000390.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 605794..605850 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000390.1 ID=Ec-00_000390.1|Name=Ec-00_000390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=286bp
MELSTFGDATVDDMLKLVQDREALFENMMSGPGIPATKFPRRGKPRSVVL
TLVRPGGSSSSGGGGGGGGGGGGTGGGVGGVTSFSSTASPSMFGGSEEVS
PASSFSSSVGRGRQRGITSSFGRTRFPAERDLFSKPSYKRSFRSQPHQHQ
QHQHQQGPTSLKGVLDLELEWNRQRGRKGSLRLGEVIEAIAGIDSQILRP
VCEELRRRAASVGESRVGEGGEREEEEDTFVSLRTNRRTLDLKFSTVPIR
NRFMLAFKTLAWETAAARAGSTSGRGSRPVGSSHF*
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spliced messenger RNA

>Ec-00_000390.1 ID=Ec-00_000390.1|Name=Ec-00_000390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=892bp|location=Sequence derived from alignment at chr_00:605760..610110+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GGGGGGGGGTGGCACGCGGGGGGGCCGCGGTAAGATGGAGCTGTCGACGT
TCGGCGATGCCACCGTGGACGACATGCTCAAGCTTGTGCAGGACCGAGAG
GCCCTCTTCGAGAACATGATGTCCGGTCCAGGGATCCCGGCAACCAAGTT
TCCCCGCAGGGGCAAGCCGCGAAGCGTCGTGCTAACGCTCGTGCGTCCCG
GCGGTAGCAGCAGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC
GGGACGGGGGGAGGAGTAGGTGGAGTGACGTCGTTCTCGTCAACGGCAAG
CCCGTCCATGTTCGGAGGCAGCGAGGAGGTTTCTCCTGCTTCTTCTTTCT
CGTCCTCCGTTGGCCGTGGGAGGCAGCGAGGGATAACCTCATCATTCGGG
CGCACCCGGTTCCCAGCAGAACGCGACCTCTTCTCGAAACCCTCGTACAA
GCGGTCTTTCCGCTCCCAACCTCATCAACATCAGCAGCACCAGCACCAGC
AGGGTCCGACATCGTTGAAGGGTGTTCTCGACCTAGAGCTGGAGTGGAAT
CGTCAGAGGGGGCGGAAGGGGTCTCTGCGGTTGGGAGAGGTCATCGAGGC
CATCGCGGGCATCGATTCACAGATACTTCGGCCCGTGTGCGAGGAGCTGC
GGCGGCGTGCTGCATCCGTCGGAGAGTCACGTGTAGGGGAAGGAGGGGAA
CGGGAAGAGGAAGAGGACACGTTCGTTTCGCTCCGCACAAACCGGAGGAC
TCTAGACCTCAAGTTTTCCACGGTCCCCATCAGGAACCGGTTCATGCTCG
CCTTCAAGACCCTGGCGTGGGAGACAGCGGCTGCCAGGGCTGGCAGCACC
AGCGGCAGAGGCAGCAGGCCTGTCGGATCGAGCCATTTCTAA
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protein sequence of Ec-00_000390.1

>Ec-00_000390.1 ID=Ec-00_000390.1|Name=Ec-00_000390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=286bp
MELSTFGDATVDDMLKLVQDREALFENMMSGPGIPATKFPRRGKPRSVVL
TLVRPGGSSSSGGGGGGGGGGGGTGGGVGGVTSFSSTASPSMFGGSEEVS
PASSFSSSVGRGRQRGITSSFGRTRFPAERDLFSKPSYKRSFRSQPHQHQ
QHQHQQGPTSLKGVLDLELEWNRQRGRKGSLRLGEVIEAIAGIDSQILRP
VCEELRRRAASVGESRVGEGGEREEEEDTFVSLRTNRRTLDLKFSTVPIR
NRFMLAFKTLAWETAAARAGSTSGRGSRPVGSSHF*
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mRNA from alignment at chr_00:605760..610110+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000390.1 ID=Ec-00_000390.1|Name=Ec-00_000390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4351bp|location=Sequence derived from alignment at chr_00:605760..610110+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GGGGGGGGGTGGCACGCGGGGGGGCCGCGGTAAGATGGAGCTGTCGACGT
TCGGCGATGCCACCGTGGACGACATGCTCAAGCTTGTGCAGGTGTTGTGG
GTTTTGTTGCCAACCTTCCATCCTTGCGGGACTTGGAAGTATAGTCATGC
CTGCCGAATGTGATCAATGTTCGTTTGGGTAGCTGGGATGCCCAATCAAC
TCATGGCATACCTGGATTGGCGCAGCAAACGCGAAGGGTGATGATGTTTC
ATCCTTGTGAAGCTTGAGTAGTGTACGAAACCTGGGCCGTCGAAAACCCG
ACACATCGCTCCTTCCCGGCTTTGTAGGGATGCGAGGTCTATGGTCTAAC
GACTACGACATGCGTTAACATGAGTACACACCCCTCCCACCCTGTATGCG
TAGCAACTGCTGTAGAAGTTTTTTTTGTTTTCTTGGTGGTGTGTAGGATC
TATCGATCTGTCGATCGATCTATCTACCAGGCGTCCTCTTGATAGTATCA
TCAGTCGCCCCCTCCCACGCCTGCAACTTGGTTGTATTTCAACAACCAGT
GTTTGTTTCGAGGTCAGCCTTGGCTTGTAGACTTCCTCGTACTTTCCGCA
TGTGGGTTTGGACGTAAAAGGCGTAAAATCGGGATTCCCATCTTGGAAAA
TATTCCATAACAACTGGTCTGTGAGCACACGCAATACTTGGGAGATACCC
TAGCTCGTTGCGCGGATCGTGCCGTGACTGTTCTTTTCCCCCGAGGGGTC
CGAAAATCCCTCTTCGAGAATGGACCATTCCTTTCTTGTTTTTGTTTTTC
CTCCCTCTCGTTATTTGGGGCCGTTCTTTGCTCTCTTCGCTATCTCCGGG
ACCGGAAAACTCTTTTTGAGAATGAAAAATTCCCTAGTTTTCTTTTTGAT
TTCCTCCCTTCATTCTTTCGGAGCCGTTCTTTGCTTTCTTCGCTCTCTCC
AAATTTTTGTTGAGAATGAACAATTCCTTACTTTTCTTTTTGTTTCCTCC
GTTTTTTTCTTTTGGCACAGTTCTCTGCTTTCTTCGCTTTCTCCAAATTC
TTTTTGAGGCCATACCATTCCTTGCGGTTCTTTTTGTTCGCCCTTTCTTT
CTTTCGGAACCGGTCTTTGCTTTCTTGGCGTTCTCCAGGACCGAGACGCC
CTCTTCGAAAACGAGAACCTCCCCTCTCCTTACCTTTTGTTTTCCTGCCT
TATTTCCCTCTTTCTTTTGGGACTGTTCTTTGCGTTCGTGGCGTTCTCCA
GGACCGAGAGGCCCTCTTCGAGAACATGATGTCCGGTCCAGGGATCCCGG
CAACCAAGTTTCCCCGCAGGGGCAAGCCGCGAAGCGTCGTGCTAACGCTC
GTGCGTCCCGGCGGTAGCAGCAGCAGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCGGCGGCGGGACGGGGGGAGGAGTAGGTGGAGTGACGTCGTTCTCGT
CAACGGCAAGCCCGTCCATGTTCGGAGGCAGCGAGGAGGTTTCTCCTGCT
TCTTCTTTCTCGTCCTCCGTTGGCCGTGGGAGGCAGCGAGGGATAACCTC
ATCATTCGGGCGCACCCGGTTCCCAGGTAAGGCCTTTCTTCTTCTGAGAT
ATTTTGTTTACTCTGTGGTACAGTCGGTGGTCCTCTGTGGCGGTACCTGA
ATAGCGGAATGTCCTGAATAACGGCGCCGGGCCAAGCGCATCTCTCAGCA
CAATCGCTGTTAGGAATAGTGGCACTGCCCTGAATAACGGCACCAAAGTC
TCTTGTCACTACCTACCGCTATTGAGGACCGCCGACTGTACTCCTATGTA
TTAAATTGGCCAATCAATTAATTGCGGGCCACTTTTCTCTCTCTCTCTCT
CTAGTTTTTTGTGTGTAAAGGTAACGGTAAAGGTAAAGGTGTGCATGCGC
ACGACTCACTTGCCTCCTTATCCTTATGTCCAACCCAAGATTGGTCATAG
TGGCGGGAGAACGTACTTGTGCAGCATGTGTGCTACCGATCGATGTTGAT
ATTATTGACCGATTGCTTTTCTCCGCAACATCCCAAGAGAGTTTCTCTAA
AGACTTTCGCTACACTCGTCAGTAGCAGTTAGCAGTGACACCGGCTTAGT
GGCACAATTCTCGGTAGTATTCTAGTGACGCATCTTGTGCTCGAGCCAGT
CTAGAGACATGTCGGTATTATTCGATTTTGTGGTCGCGAACGATGTCAGT
GGCAGCAGGGGAGCCGTGTAGCATCTCGAAGCATCTCGAAGCATCTCGAT
CGAAAGTCGAGAGAAAGGAAGGACTGTAGTATGTTTGGTCTCGAGTGGAA
GTGAGTCTCCTTGATGTTTGCACCACTTTTTTTTTTTTTTTTTTTCCTCA
CTTGGCAGTTACAACGTGTTTTCTTTGTCGTACTCTAAAGATCGCAAGAA
TGCTTGACATCTGTCGCCATTTTTTTTTGCCGCCCTCCAAATTGTCCGTC
TGCACCCTTCGTGTCCCCGGTCCACTACAGCAGAACGCGACCTCTTCTCG
AAACCCTCGTACAAGCGGTCTTTCCGCTCCCAACCTCATCAACATCAGCA
GCACCAGCACCAGCAGGGTCCGACATCGTTGAAGGGTGTTCTCGACCTAG
AGCTGGAGTGGAATCGTCAGAGGGGGCGGAAGGGGTCTCTGCGGTTGGGA
GAGGTCATCGAGGCCATCGCGGGCATCGATTCACAGGTACTTTGTTGTGT
CGTACGTTGCTCTGATTTAACCGGTAGAATGTGTGTGAGGTGTGACTTCG
AAAATTGTACAGTGCTTTGATTTCATGGGCACCCTGTTGTGTTGTGTTGT
AGTGGCTTCGAAGAATAATGGGGTGCTTTGAATTTGCAGGTGGCGTGTTG
TGTTCAACGTGTGGCGTGGGGGGAGAGTTTAAGTTCACAGGTAGGTACAA
TAATTCGTTGTGCCATAAAGTGGCTTTGAGTGCTAGTACGGTGCTCTGAT
TTCACCGGTGATGTGTTATGTTTGAGATGTCTTAGAGTAGTACGCGAGCA
CGGCGGTGCTGCGCTTTGTTTCTGACCACTCCGCGCGTCGATGGAACAAA
TTTTGCCGGCCTCAGAATCAATACCATGGTATGGTTCAGGAGATATATCT
TGTGGTTGGCAGTAAATACCGTGTTGGAGCAGAAGGCCAGACTTAGGGTT
GGCTTGTATGCACACGAGGCACCAAAAAACAAGACAAGATGTGGGGTGCT
GCATAGAGCAAGGTATCATACAATAGTAGGAACTTGGAGCTTGCCTACAT
GTACTGCTGAGCTGTTGAGCATAGACTGGAACCAACGATGCTAAAAAAAA
ATATATATATATATATATGCGAAATAATTACAACAGCAGCAACAAAACAC
AGCTCAGTGTACCATGCCATGCCATGCCATGCCAGATACTTCGGCCCGTG
TGCGAGGAGCTGCGGCGGCGTGCTGCATCCGTCGGAGAGTCACGTGTAGG
GGAAGGAGGGGAACGGGAAGAGGAAGAGGACACGTTCGTTTCGCTCCGCA
CAAACCGGAGGACTCTAGACCTCAAGTTTTCCACGGTCCCCATCAGGTAC
GGTACGGTACAAGCAGTGTGCATATGACACTGCCTTCGTCGTCTGTGTTG
CTGTTGCCGTTTTTGTGGCTGTCACTGTTTGTCGTTGTCGTTATTGTCGT
TGTGATTGTTGTTGCTGTTGCTGTTGTTGTCGTTGCGGCTCTTGTCCTGC
CTGTTGTTCGTCGTACCGCTGTGTGGGCAATGTTTGGCATGACTGGGTAC
CGTAGTACCGTGGCACCATAGTACCGTAGGCTAGCTGCCCAAGGTGGGGG
CTCCGTAGAATAAACAGCCTGCTAGAATAGCTGCGTCTTATGCTACTTTA
TTATTGTCAAGGGTAGCGTGTGCGACACGCGTTGGGAGATAAGAGAACGC
TCTCGGCTATTCAAACTTCCAAGCGTTTCTCCGGCCACCAAAATAATACT
TGAGTAGGAGATGAAGTAGGCTGTACCTCCCCACTCCCACCCCGCCGTCG
CCGCCGTATGCTGTAGTGGTCTGCTGTTCGCTCTTGGCAACCTTTGTTTT
TAGTTGGTTAATATAGCACTCACAACGAGTCCCTCTCTATCCACAGGCGA
GAGAGAGAGAGTCAAGCAGGATAAATTAACGATGCGATGAACCCCCAGTT
TTTTTCTGTTTTTGTTGGTTGTTTCGTGCCTCTATGTTCGGGCACAACTG
GTTTATTTATTCGTGAAATTTTTCTTTTCCCGACTGCTGCAGGAACCGGT
TCATGCTCGCCTTCAAGACCCTGGCGTGGGAGACAGCGGCTGCCAGGGCT
GGCAGCACCAGCGGCAGAGGCAGCAGGCCTGTCGGATCGAGCCATTTCTA
A
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Coding sequence (CDS) from alignment at chr_00:605760..610110+

>Ec-00_000390.1 ID=Ec-00_000390.1|Name=Ec-00_000390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=858bp|location=Sequence derived from alignment at chr_00:605760..610110+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGCTGTCGACGTTCGGCGATGCCACCGTGGACGACATGCTCAAGCT
TGTGCAGGACCGAGAGGCCCTCTTCGAGAACATGATGTCCGGTCCAGGGA
TCCCGGCAACCAAGTTTCCCCGCAGGGGCAAGCCGCGAAGCGTCGTGCTA
ACGCTCGTGCGTCCCGGCGGTAGCAGCAGCAGCGGCGGCGGCGGCGGCGG
CGGCGGCGGCGGCGGCGGGACGGGGGGAGGAGTAGGTGGAGTGACGTCGT
TCTCGTCAACGGCAAGCCCGTCCATGTTCGGAGGCAGCGAGGAGGTTTCT
CCTGCTTCTTCTTTCTCGTCCTCCGTTGGCCGTGGGAGGCAGCGAGGGAT
AACCTCATCATTCGGGCGCACCCGGTTCCCAGCAGAACGCGACCTCTTCT
CGAAACCCTCGTACAAGCGGTCTTTCCGCTCCCAACCTCATCAACATCAG
CAGCACCAGCACCAGCAGGGTCCGACATCGTTGAAGGGTGTTCTCGACCT
AGAGCTGGAGTGGAATCGTCAGAGGGGGCGGAAGGGGTCTCTGCGGTTGG
GAGAGGTCATCGAGGCCATCGCGGGCATCGATTCACAGATACTTCGGCCC
GTGTGCGAGGAGCTGCGGCGGCGTGCTGCATCCGTCGGAGAGTCACGTGT
AGGGGAAGGAGGGGAACGGGAAGAGGAAGAGGACACGTTCGTTTCGCTCC
GCACAAACCGGAGGACTCTAGACCTCAAGTTTTCCACGGTCCCCATCAGG
AACCGGTTCATGCTCGCCTTCAAGACCCTGGCGTGGGAGACAGCGGCTGC
CAGGGCTGGCAGCACCAGCGGCAGAGGCAGCAGGCCTGTCGGATCGAGCC
ATTTCTAA
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Synonyms
The feature 'Ec-00_000390.1' has the following synonyms
Synonym
Esi1097_0001
Esi_1097_0001