Ec-00_000340.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000340.1
Unique NameEc-00_000340.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length153
Homology
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BLAST of Ec-00_000340.1 vs. uniprot
Match: D7FHJ7_ECTSI (EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ7_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 2.620e-87
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 
Query:    1 MAVTPNLRRQQQQPYQETAKPVSKNSTVTGAAAATXXXXXXXXXXXXXXXAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTLRANANAHKKRTRRRNR 456
            MAVTPNLRRQQQQPYQETAKPVSKNSTVTGAAAATXXXXXXXXXXXXXXXAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTLRANANAHKKRTRRRNR
Sbjct:    1 MAVTPNLRRQQQQPYQETAKPVSKNSTVTGAAAATXXXXXXXXXXXXXXXAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTLRANANAHKKRTRRRNR 152
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BLAST of Ec-00_000340.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 4.130e-69
Identity = 135/137 (98.54%), Postives = 135/137 (98.54%), Query Frame = 1 
Query:    1 MAVTPNLRRQQQQPYQETAKPVSKNSTVTGAAAATXXXXXXXXXXXXXXXAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTLR 411
            MAVT NLRRQQQQPYQETAKPVSKNSTVTGAAAATXXXXXXXXXXXXXXXAATYEVSPDGDPMTL AALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTLR
Sbjct:   28 MAVTANLRRQQQQPYQETAKPVSKNSTVTGAAAATXXXXXXXXXXXXXXXAATYEVSPDGDPMTLAAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTLR 164
[Close]
BLAST of Ec-00_000340.1 vs. uniprot
Match: A0A6H5KG59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG59_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 1.020e-67
Identity = 120/137 (87.59%), Postives = 125/137 (91.24%), Query Frame = 1 
Query:    1 MAVTPNLRRQQQQPYQETAKPVSKNSTVTGAAAATXXXXXXXXXXXXXXXAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTLR 411
            MA T  LRR QQQP++ETAKPVSK ST+TGAA AT    XXXXXXXXXX AATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTM AGVEGNPLVIEGGRDAV+NYYTGDKSIMWSQKVVDIRHSW+TLR
Sbjct:   13 MADTTILRRNQQQPHRETAKPVSKKSTITGAAGATAARLXXXXXXXXXXSAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRDAVINYYTGDKSIMWSQKVVDIRHSWITLR 149
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BLAST of Ec-00_000340.1 vs. uniprot
Match: D8LJ28_ECTSI (EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ28_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 4.790e-44
Identity = 71/86 (82.56%), Postives = 79/86 (91.86%), Query Frame = 1 
Query:  151 AATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTL 408
            AA YEVSPDG PMTLTAALEVAGAGD ISL DGIYREP+VTM AGVEGNPLVI GGR A++NY++GD+S+MWSQKVVDIRHS+VTL
Sbjct:   33 AAMYEVSPDGSPMTLTAALEVAGAGDIISLADGIYREPIVTMNAGVEGNPLVITGGRGAIINYFSGDRSLMWSQKVVDIRHSYVTL 118
[Close]
BLAST of Ec-00_000340.1 vs. uniprot
Match: A0A6H5K1D2_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D2_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 2.560e-39
Identity = 69/86 (80.23%), Postives = 79/86 (91.86%), Query Frame = 1 
Query:  151 AATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTL 408
            AA YEVSPDG+PMTLTAALEVAGAGD +SL DG YREP+VTM AGVEGNPLVI GGR A++NY++GD+S+MWSQKVVDIRHS+VTL
Sbjct:   32 AAMYEVSPDGNPMTLTAALEVAGAGDIVSLADGTYREPIVTMNAGVEGNPLVITGGRGAIINYFSGDRSLMWSQKVVDIRHSYVTL 117
[Close]
BLAST of Ec-00_000340.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.090e-18
Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:  151 AATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTL 408
            A T++ SPDG P ++ +AL  AGAGDT+ L DG Y E +VT++ G  GNPL+I GGRDA+VN   GD       KVV ++HSWVTL
Sbjct:   13 ARTFDASPDGVPYSIASALAEAGAGDTVVLADGTYNEAIVTVQGGESGNPLIITGGRDALVN--AGDDG-----KVVYVQHSWVTL 91
[Close]
BLAST of Ec-00_000340.1 vs. uniprot
Match: D7FZD2_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD2_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 7.210e-9
Identity = 32/85 (37.65%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:  157 TYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTLR 411
            TY+V+ DGD   L  A+++A AGDT+SL DG Y + L T++ G  GNP+ + GG  A++      K+   + + V + HS++ L+
Sbjct:    2 TYDVTVDGDGFGLAEAMDLAEAGDTVSLQDGTYEQALETVRDGESGNPITVVGGPGAII------KAQNSASRSVFVGHSFIELK 80
[Close]
BLAST of Ec-00_000340.1 vs. uniprot
Match: A0A7X3MR80_9HYPH (Uncharacterized protein n=1 Tax=Microvirga makkahensis TaxID=1128670 RepID=A0A7X3MR80_9HYPH)

HSP 1 Score: 52.4 bits (124), Expect = 4.850e-5
Identity = 37/96 (38.54%), Postives = 50/96 (52.08%), Query Frame = 1 
Query:  151 AATYEVSPDG---------DPM-TLTAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTL 408
            A TY V+P G         DP+ T+  ALE A  GDTI L  G Y +   T++ G  G P+VI GGR+AVV       S   + +V +I H ++ L
Sbjct:   29 AETYFVAPYGSAAGTGSRSDPLQTIQGALERAKPGDTIELAAGRYFQDFRTVRNGQPGRPIVIRGGRNAVV-------SGAGASRVAEINHDFIEL 117
The following BLAST results are available for this feature:
BLAST of Ec-00_000340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FHJ7_ECTSI2.620e-87100.00EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LJ42_ECTSI4.130e-6998.54FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KG59_9PHAE1.020e-6787.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ28_ECTSI4.790e-4482.56EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5K1D2_9PHAE2.560e-3980.23Beta_helix domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5KT05_9PHAE1.090e-1853.49Beta_helix domain-containing protein n=2 Tax=Ectoc... [more]
D7FZD2_ECTSI7.210e-937.65FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A7X3MR80_9HYPH4.850e-538.54Uncharacterized protein n=1 Tax=Microvirga makkahe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:512160..512975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length459
Hectar predicted targeting categoryother localisation
Gene idEc-00_000340.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000340Ec-00_000340Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 512160..512975 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000340.1.1Ec-00_000340.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 512160..512570 +
Ec-00_000340.1.2Ec-00_000340.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 512928..512975 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000340.1CDS:Ec-00_000340.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 512160..512570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000340.1Ec-00_000340.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 512160..512975 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000340.1 ID=Ec-00_000340.1|Name=Ec-00_000340.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=153bp
MAVTPNLRRQQQQPYQETAKPVSKNSTVTGAAAATAARLATAALALTAAS
AATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNP
LVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTLRANANAHKKRTRRR
NR*
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spliced messenger RNA

>Ec-00_000340.1 ID=Ec-00_000340.1|Name=Ec-00_000340.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=459bp|location=Sequence derived from alignment at chr_00:512160..512975+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGTTACGCCTAACCTTCGACGTCAGCAACAGCAGCCATACCAGGA
GACAGCGAAACCGGTCAGTAAAAACTCCACCGTCACCGGCGCCGCCGCGG
CCACCGCCGCGCGCCTTGCCACGGCAGCCCTCGCCCTCACCGCTGCTAGC
GCGGCCACCTACGAGGTGTCTCCTGATGGCGATCCCATGACGCTCACCGC
AGCGCTAGAGGTGGCCGGTGCAGGCGACACCATATCATTGGGGGACGGGA
TCTACCGCGAGCCGCTCGTGACCATGAAGGCCGGTGTGGAGGGTAATCCG
CTCGTGATCGAGGGTGGCAGAGACGCGGTCGTCAACTACTACACCGGCGA
CAAGAGTATCATGTGGTCCCAGAAGGTCGTCGACATTCGCCACTCGTGGG
TCACTCTGCGGGCCAACGCAAACGCCCACAAAAAGCGGACCCGCCGCCGA
AATCGATAG
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protein sequence of Ec-00_000340.1

>Ec-00_000340.1 ID=Ec-00_000340.1|Name=Ec-00_000340.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=153bp
MAVTPNLRRQQQQPYQETAKPVSKNSTVTGAAAATAARLATAALALTAAS
AATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNP
LVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTLRANANAHKKRTRRR
NR*
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mRNA from alignment at chr_00:512160..512975+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000340.1 ID=Ec-00_000340.1|Name=Ec-00_000340.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=816bp|location=Sequence derived from alignment at chr_00:512160..512975+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGGTTACGCCTAACCTTCGACGTCAGCAACAGCAGCCATACCAGGA
GACAGCGAAACCGGTCAGTAAAAACTCCACCGTCACCGGCGCCGCCGCGG
CCACCGCCGCGCGCCTTGCCACGGCAGCCCTCGCCCTCACCGCTGCTAGC
GCGGCCACCTACGAGGTGTCTCCTGATGGCGATCCCATGACGCTCACCGC
AGCGCTAGAGGTGGCCGGTGCAGGCGACACCATATCATTGGGGGACGGGA
TCTACCGCGAGCCGCTCGTGACCATGAAGGCCGGTGTGGAGGGTAATCCG
CTCGTGATCGAGGGTGGCAGAGACGCGGTCGTCAACTACTACACCGGCGA
CAAGAGTATCATGTGGTCCCAGAAGGTCGTCGACATTCGCCACTCGTGGG
TCACTCTGCGGGTGAGAGGCAAAGACACAATAATAGGAGAGAAGAATAGA
GACAAGACGTGTGGGTGAGGGCGTGCGTGTTGTGGACCGCACGATGTTCA
GCACACCTGCTGCCAGAACGTATTCCAAGGCTAGGTCGTAGCCTGGCCGC
AGCCGTTTCAATTCCTCTGCGGGAATCGACTGGTTCTCCGGTAGGAGGTG
TTCAGGAAGAAACACCCGTATTGGAACAATTTCCGTCGGAGGTCTTGGCG
CGCAAACGCGAAGGGTTCCATGATCCTCCACCTGAATAGGTGCTCGTCCC
AACGATACCAGTAACTCTCAGGAATCGCTCGGGGTTGGGTGCACGCATGT
TTTTGTTCTGTTTGTTAGGCCAACGCAAACGCCCACAAAAAGCGGACCCG
CCGCCGAAATCGATAG
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Coding sequence (CDS) from alignment at chr_00:512160..512975+

>Ec-00_000340.1 ID=Ec-00_000340.1|Name=Ec-00_000340.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=459bp|location=Sequence derived from alignment at chr_00:512160..512975+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGGTTACGCCTAACCTTCGACGTCAGCAACAGCAGCCATACCAGGA
GACAGCGAAACCGGTCAGTAAAAACTCCACCGTCACCGGCGCCGCCGCGG
CCACCGCCGCGCGCCTTGCCACGGCAGCCCTCGCCCTCACCGCTGCTAGC
GCGGCCACCTACGAGGTGTCTCCTGATGGCGATCCCATGACGCTCACCGC
AGCGCTAGAGGTGGCCGGTGCAGGCGACACCATATCATTGGGGGACGGGA
TCTACCGCGAGCCGCTCGTGACCATGAAGGCCGGTGTGGAGGGTAATCCG
CTCGTGATCGAGGGTGGCAGAGACGCGGTCGTCAACTACTACACCGGCGA
CAAGAGTATCATGTGGTCCCAGAAGGTCGTCGACATTCGCCACTCGTGGG
TCACTCTGCGGGCCAACGCAAACGCCCACAAAAAGCGGACCCGCCGCCGA
AATCGATAG
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Synonyms
The feature 'Ec-00_000340.1' has the following synonyms
Synonym
Esi1081_0001
Esi_1081_0001