Ec-00_000330.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000330.1
Unique NameEc-00_000330.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length168
Homology
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BLAST of Ec-00_000330.1 vs. uniprot
Match: D7FHU2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU2_ECTSI)

HSP 1 Score: 310 bits (795), Expect = 1.310e-106
Identity = 151/155 (97.42%), Postives = 151/155 (97.42%), Query Frame = 1 
Query:   37 GSRRIEALKLLEWAEPIRCVCYRNISDVALRGVLSDDSLRQVEMKLTLEQHGLGVEYGSRGGGLVSPKKALHLATGVDHFLVAHRQGDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASVTTAVPYLGAKKRFSDDIAVWVIQRLTSYETPWRR 501
               RIEALKLLEWAEPIRCVCYRNISDVALRGVLSDDSLRQVEMKLTLEQHGL VEYGSRGGGLVSPKKALHLATGVDHFLVAHRQGDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASVTTAVPYLGAKKRFSDDIAVWVIQRLTSYETPWRR
Sbjct:   15 SQHRIEALKLLEWAEPIRCVCYRNISDVALRGVLSDDSLRQVEMKLTLEQHGLVVEYGSRGGGLVSPKKALHLATGVDHFLVAHRQGDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASVTTAVPYLGAKKRFSDDIAVWVIQRLTSYETPWRR 169
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BLAST of Ec-00_000330.1 vs. uniprot
Match: A0A6H5J8R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8R0_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 1.820e-55
Identity = 87/119 (73.11%), Postives = 99/119 (83.19%), Query Frame = 1 
Query:  115 DVALRGVLSDDSLRQVEMKLTLEQHGLGVEYGSRGGGLVSPKKALHLATGVDHFLVAHRQGDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASVTTAVPYLGAKKRFSDDIAVWVIQR 471
            D++   V   DS+RQVEMKLTLEQHGL VEYG+RGGG VSPKKALHL TGVD+ L+AHRQGD+FT N+KVIPQKFDG  RT EG+H PNTAAASV   VPY+GAKKR SD++AVW IQR
Sbjct:   16 DLSSLVVNRSDSMRQVEMKLTLEQHGLVVEYGTRGGGQVSPKKALHLTTGVDYLLIAHRQGDDFTYNDKVIPQKFDGCQRTDEGRHTPNTAAASVMNGVPYVGAKKRLSDNVAVWAIQR 134
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BLAST of Ec-00_000330.1 vs. uniprot
Match: D7FXI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI3_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.980e-33
Identity = 63/99 (63.64%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:  211 SRGGGLVSPKKALHLATGVDHFLV---------------AHRQGDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASVTTAVPYLGAKKRFSDDIAVWV 462
            S+G    +P + + L  G D  L                + RQGDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASV TAVPYLGAKKRFSDD+AVWV
Sbjct:   27 SKGFMATTPPQIMFLDIGEDEHLAQDMVDNKLRAIYIDGSRRQGDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASVMTAVPYLGAKKRFSDDVAVWV 125
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BLAST of Ec-00_000330.1 vs. uniprot
Match: A0A6H5JK41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK41_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.200e-14
Identity = 46/125 (36.80%), Postives = 67/125 (53.60%), Query Frame = 1 
Query:  145 DSLRQVEMKLTLEQHGLGVEYGSRGGGLVSPKKALHLATGVDHFLVAHRQ------GDNFTCNEKVIPQKFDGMLRTSEGKHDPNTAAAS--------VTTAVPYLGAKKRFSDDIAVWVIQRLT 477
            + L+Q  + + +E HGL VEYGSRGGGL +  K   +   +DH++VAH        G NFTCN+ V PQ F G L  S G  D +T + +        +   VP+ G  + + D++  + IQR T
Sbjct:  700 EHLQQPGLGMVVEDHGLVVEYGSRGGGLTAESKKKFIGGALDHYIVAHHNASGDGGGMNFTCNDTVTPQSFTGKL--SAGSSDGSTWSTASGRRIPSPLMGDVPHKGVTRGYHDNVVQFAIQRWT 822
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BLAST of Ec-00_000330.1 vs. uniprot
Match: D7FZ29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ29_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 5.190e-14
Identity = 46/125 (36.80%), Postives = 66/125 (52.80%), Query Frame = 1 
Query:  145 DSLRQVEMKLTLEQHGLGVEYGSRGGGLVSPKKALHLATGVDHFLVAHRQGD------NFTCNEKVIPQKFDGMLRTSEGKHDPNTAAAS--------VTTAVPYLGAKKRFSDDIAVWVIQRLT 477
            + L+Q  + + +E HGL VEYGSRGGGL +  K   +   +DH++VAH  G       NFTCN+ V PQ F G  R S G  D +T + +        +   VP  G  + + D++  + IQR T
Sbjct:  199 EHLQQPGLGMVVEDHGLVVEYGSRGGGLTAESKKKFIGGALDHYIVAHHNGCGDGGGMNFTCNDTVTPQSFTG--RRSAGSSDGSTWSTASGRRIPSPLMGDVPRKGVTRGYHDNVVQFAIQRWT 321
The following BLAST results are available for this feature:
BLAST of Ec-00_000330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FHU2_ECTSI1.310e-10697.42Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5J8R0_9PHAE1.820e-5573.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXI3_ECTSI1.980e-3363.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JK41_9PHAE1.200e-1436.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ29_ECTSI5.190e-1436.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:491740..494969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length504
Hectar predicted targeting categoryother localisation
Gene idEc-00_000330.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000330Ec-00_000330Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 491740..494969 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000330.1.1Ec-00_000330.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 491740..491786 +
Ec-00_000330.1.2Ec-00_000330.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 492301..492398 +
Ec-00_000330.1.3Ec-00_000330.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 494298..494622 +
Ec-00_000330.1.4Ec-00_000330.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 494936..494969 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000330.1CDS:Ec-00_000330.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 491740..491786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000330.1Ec-00_000330.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 491740..494969 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000330.1 ID=Ec-00_000330.1|Name=Ec-00_000330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=168bp
MVDNKLRAIYIDGSRRIEALKLLEWAEPIRCVCYRNISDVALRGVLSDDS
LRQVEMKLTLEQHGLGVEYGSRGGGLVSPKKALHLATGVDHFLVAHRQGD
NFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASVTTAVPYLGAKKRFSDDI
AVWVIQRLTSYETPWRR*
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spliced messenger RNA

>Ec-00_000330.1 ID=Ec-00_000330.1|Name=Ec-00_000330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=504bp|location=Sequence derived from alignment at chr_00:491740..494969+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGACAACAAGCTGCGTGCCATCTACATCGACGGGAGCCGCAGGAT
CGAAGCTCTCAAGTTGTTGGAGTGGGCGGAACCCATCCGTTGCGTGTGCT
ATCGTAACATCAGCGACGTGGCCTTGAGGGGGGTTCTGTCTGACGACTCC
TTGAGGCAGGTGGAGATGAAACTCACCCTCGAACAGCATGGCTTGGGCGT
GGAGTACGGTTCCAGGGGAGGTGGCCTGGTGTCTCCGAAGAAGGCGCTGC
ATCTTGCAACCGGTGTCGATCACTTCCTCGTCGCACACAGGCAAGGCGAC
AACTTCACGTGCAACGAGAAGGTGATACCGCAAAAGTTCGATGGCATGCT
GCGCACATCCGAGGGCAAGCACGACCCCAACACCGCCGCTGCATCGGTGA
CGACTGCGGTCCCTTACCTCGGGGCTAAGAAGCGCTTCTCCGACGACATC
GCCGTCTGGGTGATTCAGCGGTTAACTAGTTACGAGACACCGTGGCGACG
TTGA
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protein sequence of Ec-00_000330.1

>Ec-00_000330.1 ID=Ec-00_000330.1|Name=Ec-00_000330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=168bp
MVDNKLRAIYIDGSRRIEALKLLEWAEPIRCVCYRNISDVALRGVLSDDS
LRQVEMKLTLEQHGLGVEYGSRGGGLVSPKKALHLATGVDHFLVAHRQGD
NFTCNEKVIPQKFDGMLRTSEGKHDPNTAAASVTTAVPYLGAKKRFSDDI
AVWVIQRLTSYETPWRR*
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mRNA from alignment at chr_00:491740..494969+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000330.1 ID=Ec-00_000330.1|Name=Ec-00_000330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3230bp|location=Sequence derived from alignment at chr_00:491740..494969+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTGGACAACAAGCTGCGTGCCATCTACATCGACGGGAGCCGCAGGTG
TGTGTTTTGATCAAGGGGGGATTGGACGGAAGTAGTGCGGAACAAGCTGC
CGGTTAGTCGTCATCATGCTCCTCGCAGTTGTCAGGATGATACCTCTCTC
TTGCAGTCATCACATACATACATTGTCGTACGTACCTGTGTCCTCCTACA
TGCATGCATGAGTGCACGCAAGTCCATCTCAAATGACTGCTGCTGTAGTA
CTGCGTGATGGAGGAAATGTATGCATACCATTTTTGGTAGACCTCGCGTG
AAAATGTGGCGGTCGATGACAATTCGTCACGACAGAGTGCAGCCAGCATT
GATAAAGCTGCAATACTGAGAGCGTTCCTGTAGGCTTACGCTCACCTACG
TACTATGTACGTGCGTATGGCTTTCACCAGGAACATCCCACCCGCCTCAA
ACTTGCTGCTGATGCTGCTATGCATACATACGAGACAAAATCTCCAAATC
TACGCAGCATGCCTGCAACACGTGGTAACGTGTTCTCCTGTTCTTCTTCT
TCACAACACAGGATCGAAGCTCTCAAGTTGTTGGAGTGGGCGGAACCCAT
CCGTTGCGTGTGCTATCGTAACATCAGCGACGTGGCCTTGAGGGGGGTTC
TGTCTGACGGTGAGTAGATAGGGTTTACCCAAAAACTACCAAAGCCGGAC
GCAAGTCATTGGGGGGATTTGTCGTTGTTCGCGTTGACTCAAAACTACAG
AGTAGTAGTCTAGACTATAAATTTAGTATTTTTTTTATTTTTTTTTGTTC
TTCACTTCAAATCAGCGCTCACAGCACTAGTGCCGTTTATTCCAACCCGT
GGTCACACAGAAGAGCTCACTCTACCCTCCCCTCCTGCGGTACTTCGCCT
TCAATTTTTAATGCGAGAAGAGTTCAGCACTCTCTTCCCTCTGTGTACAC
ACGAACTAGCGCTATCCACTTGGCCAGGAGCGGAAGCGAGAGAAAAACTC
ACTTTGCAAGAAAAGCTCGCCTACGCCGGGATTCGAACCCCTGACCTGAC
CTACCTCTAGAAGGTTACGAGGCTGCCAACTAGACCACCGGGGCGTCCGG
CATACATAGTATGTAGGCTACTTGCCCATGGCACCGCCGTGAGCGGCATG
TATGGTGTTCCAGAAGACACTCAAACGTGTCGGAACCAATCTTCTTCTTG
TAGATAACAACAGGCACTTCATTATAGTACTACACCATACCCACACTGAA
TGAAGTCTAGACGACATGATGTAGTGTCGTGTCGGCAAGAAATTGTCCTG
TTTGTCCTTCGGTTTTAACTTCGCCTGAAATGTACCTACCGGCCCGCTCG
GTGGGATTAGTGCTTGGTCTAGTGGCGTCGAAACCGCCAGTGGCAAAGTC
GATTGTTCGAACCCCCCATGGCGTGGAAAATGTACAGCTAGCTACTCCGC
GGGTGAGAGCGATAAACTCCGACGTCAGGACCGTCTCCTCCAAATTGGCT
GGCTGGGCCCCTTTCACGATAAAAACGAACATTCAACACGCACAGCCGGT
CGCCCCGGTGGTCAAGTGGTAACTTTAAAACCGTTCGTCGCAGAGGTCGT
GAGTTCGATTCCCCATCATGTGGACTAAGAACTAACTTGTGCGTGCGTGA
GAACGAAATACAGGTCGAAGCCCCGTGAGTGAGTAGATATTACCAATTCT
TCGACGTTAGCACCGTTGCTGTACCTTTCTCGCGACACAACACAAATAAT
TTAGAACGCACATGAAGACGATAGGGCACGAACAATAAAAAAAGTAGAAC
AAGAACAAACAAAGTTTGTATGTGGTATGTGATTTCCTCCGGTCTGTCTG
TGTGAGGGTAGAGGTAAAAAAATACACGGGTGATAAGTAACTGTAGCAAC
ATGCACCGAACGAGAGTAACGTACGGAGTGGAGATACTTGGTCGGCGCGA
ACCCAGCACGGAACCCTCCGGCGTTGTAGGTGGGTGTGGGAATTGTTCTC
CTTTTTGTTTAATTTGGTCGGTATTCTCGAGGCTCTCTTTCTCCCTCGAT
GCGGTAGCTGGTCTTTCTTTCTATCATTTTGTTTTCTCTGGAGTTCTTGT
ACCCCATTTTTTTTGTTTTCTTTTCTTTCGCGGTGTCGTGTGTGCCGGGT
TTTGAGACGAGCTCCGCATTTTTTTATGGGTTAGAGCTAATGTGAGAAAA
ACGACAACAAACAAAAAAAAACGTATCCCCACCAAGATTGGACGGTCGCT
GTAATAAATAGGACGAAAACAACAACACATACATTAATATATTTGCGGAC
CCCGCGGAGGTACGTGCGCCTCTCCGCTTCGAAGATTCGGCCCGAGCACT
CACTATATTTTGGAGCGAAAGTCAGTCGGGAGGACGATTTCGAATTTGTG
GGTATGTTTCTCCTTCGTTCGTGAAACACATCCTTCTCCTCCAGAAGAAG
AATCGTTACCGCTGAGCGGCGCGAAGCATGTGCGTCATCCTCCCCTTCGT
TGACTATTTTCTCTCGTGTCCTTCGTTCGGTCTGTAATCGTTTGTCGTAA
TCTTTCAGACTCCTTGAGGCAGGTGGAGATGAAACTCACCCTCGAACAGC
ATGGCTTGGGCGTGGAGTACGGTTCCAGGGGAGGTGGCCTGGTGTCTCCG
AAGAAGGCGCTGCATCTTGCAACCGGTGTCGATCACTTCCTCGTCGCACA
CAGGCAAGGCGACAACTTCACGTGCAACGAGAAGGTGATACCGCAAAAGT
TCGATGGCATGCTGCGCACATCCGAGGGCAAGCACGACCCCAACACCGCC
GCTGCATCGGTGACGACTGCGGTCCCTTACCTCGGGGCTAAGAAGCGCTT
CTCCGACGACATCGCCGTCTGGGTGATTCAGCGGTAGGTGCATAATAGGA
GACTTCCCTCCGTGCCGTGCTTTTTTCCTCTGTTCAAGTCCGGAGTAAAG
TGCAATGCTGTCAAGCTTTTATTGGCGTTCGAATCATGGGTGACCTAGAA
TACTTACAGGGCAGGGAATGTTGACGCCGACGCAAGAGTAGTACCACTTC
CGAGACAAGTGTCAGGCTGCGTCACCTTGTTTTTTCTTGTTTTTCGGCGA
CTGTGATGCACCGGCAAACACAGCTGCTCCAAACGTATCCTACGTGCTCA
AAACACGCGCTGTCTGTCTGTCTTTTGCCGCTGCCCCCTCATTCAGGTTA
ACTAGTTACGAGACACCGTGGCGACGTTGA
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Coding sequence (CDS) from alignment at chr_00:491740..494969+

>Ec-00_000330.1 ID=Ec-00_000330.1|Name=Ec-00_000330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=504bp|location=Sequence derived from alignment at chr_00:491740..494969+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTGGACAACAAGCTGCGTGCCATCTACATCGACGGGAGCCGCAGGAT
CGAAGCTCTCAAGTTGTTGGAGTGGGCGGAACCCATCCGTTGCGTGTGCT
ATCGTAACATCAGCGACGTGGCCTTGAGGGGGGTTCTGTCTGACGACTCC
TTGAGGCAGGTGGAGATGAAACTCACCCTCGAACAGCATGGCTTGGGCGT
GGAGTACGGTTCCAGGGGAGGTGGCCTGGTGTCTCCGAAGAAGGCGCTGC
ATCTTGCAACCGGTGTCGATCACTTCCTCGTCGCACACAGGCAAGGCGAC
AACTTCACGTGCAACGAGAAGGTGATACCGCAAAAGTTCGATGGCATGCT
GCGCACATCCGAGGGCAAGCACGACCCCAACACCGCCGCTGCATCGGTGA
CGACTGCGGTCCCTTACCTCGGGGCTAAGAAGCGCTTCTCCGACGACATC
GCCGTCTGGGTGATTCAGCGGTTAACTAGTTACGAGACACCGTGGCGACG
TTGA
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Synonyms
The feature 'Ec-00_000330.1' has the following synonyms
Synonym
Esi1078_0002
Esi_1078_0002