Ec-00_000310.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000310.1
Unique NameEc-00_000310.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length137
Homology
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BLAST of Ec-00_000310.1 vs. uniprot
Match: D7FHE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHE8_ECTSI)

HSP 1 Score: 269 bits (687), Expect = 3.510e-91
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:    1 MTKETSAEVVVDGSLEYEERAKFLQFGLCGRCDRVFRISQGWKHVEQKSRHETVVDGESKLRHLSTLVAKAEMNKTALRAARGAHKDILEATEKLRALRHEVSATRRALAPLVMSCPFCLWNSAPLFSSPCTGGGG 408
            MTKETSAEVVVDGSLEYEERAKFLQFGLCGRCDRVFRISQGWKHVEQKSRHETVVDGESKLRHLSTLVAKAEMNKTALRAARGAHKDILEATEKLRALRHEVSATRRALAPLVMSCPFCLWNSAPLFSSPCTGGGG
Sbjct:    1 MTKETSAEVVVDGSLEYEERAKFLQFGLCGRCDRVFRISQGWKHVEQKSRHETVVDGESKLRHLSTLVAKAEMNKTALRAARGAHKDILEATEKLRALRHEVSATRRALAPLVMSCPFCLWNSAPLFSSPCTGGGG 136
The following BLAST results are available for this feature:
BLAST of Ec-00_000310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHE8_ECTSI3.510e-91100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:478892..479866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length411
Hectar predicted targeting categoryother localisation
Gene idEc-00_000310.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000310Ec-00_000310Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 478892..479866 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000310.1.1Ec-00_000310.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 478892..478900 +
Ec-00_000310.1.2Ec-00_000310.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 479144..479214 +
Ec-00_000310.1.3Ec-00_000310.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 479314..479377 +
Ec-00_000310.1.4Ec-00_000310.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 479600..479866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000310.1CDS:Ec-00_000310.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 478892..478900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000310.1Ec-00_000310.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 478892..479866 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000310.1 ID=Ec-00_000310.1|Name=Ec-00_000310.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=137bp
MTKETSAEVVVDGSLEYEERAKFLQFGLCGRCDRVFRISQGWKHVEQKSR
HETVVDGESKLRHLSTLVAKAEMNKTALRAARGAHKDILEATEKLRALRH
EVSATRRALAPLVMSCPFCLWNSAPLFSSPCTGGGG*
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spliced messenger RNA

>Ec-00_000310.1 ID=Ec-00_000310.1|Name=Ec-00_000310.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=411bp|location=Sequence derived from alignment at chr_00:478892..479866+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAAGGAGACATCAGCCGAAGTTGTTGTGGACGGGAGCCTGGAATA
CGAGGAGCGCGCGAAGTTCCTTCAGTTCGGGCTCTGCGGGCGATGTGATC
GAGTTTTCCGAATCAGCCAGGGGTGGAAACATGTCGAGCAGAAGTCTCGT
CACGAAACTGTTGTCGACGGGGAGAGCAAGCTACGCCACCTCTCGACGCT
AGTGGCCAAGGCGGAGATGAATAAAACGGCCTTGCGAGCCGCGCGGGGGG
CTCACAAGGACATCCTCGAGGCCACCGAGAAACTCAGAGCCCTTCGCCAT
GAGGTCTCGGCGACCCGGAGAGCTCTCGCACCTTTGGTCATGTCGTGCCC
GTTCTGCCTCTGGAACTCCGCACCGCTATTTTCGTCACCTTGTACCGGGG
GGGGAGGATGA
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protein sequence of Ec-00_000310.1

>Ec-00_000310.1 ID=Ec-00_000310.1|Name=Ec-00_000310.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=137bp
MTKETSAEVVVDGSLEYEERAKFLQFGLCGRCDRVFRISQGWKHVEQKSR
HETVVDGESKLRHLSTLVAKAEMNKTALRAARGAHKDILEATEKLRALRH
EVSATRRALAPLVMSCPFCLWNSAPLFSSPCTGGGG*
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mRNA from alignment at chr_00:478892..479866+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000310.1 ID=Ec-00_000310.1|Name=Ec-00_000310.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=975bp|location=Sequence derived from alignment at chr_00:478892..479866+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACAAAGGTATATGCCCCTACGAAAAAAAAAAAGTTTTAGATCACATA
TTCTGTAAAAATGCAGAGTCTCAGCCTATCGTTGGCGAAGACGTTACAAT
GTAGGGTGTAGAAAAAGTGACCCTCGGGTGTGAGACACTCCCAGCCACGG
CCGTCTGTATGTAGTAATGGATCACCAGCATCGACCCACACTCGACTAAT
AATAACACCCCGCCCGTCCGTCTGTTCTCTCTAACTTCCGTCGTCTGCGA
AGGAGACATCAGCCGAAGTTGTTGTGGACGGGAGCCTGGAATACGAGGAG
CGCGCGAAGTTCCTTCAGTTCGGGTGAGTGCCGGAGGACGTACGTTCACC
CTAACAAAGTCAAGCCGCGTTCTTTCTTGTACATAAGGTCGTCACCGTTT
ACTCCCTCGTCTTTGCCAATAGGCTCTGCGGGCGATGTGATCGAGTTTTC
CGAATCAGCCAGGGGTGGAAACATGTCGAGCAGAAGGTGAGAAAGTTCAT
CACGGAGACATCTACGAGCACCCTTGAGTTTTTCTTCGTGTGAGGCATAA
GTAGCTCTTCTCAAGAGAGAAAAACATTTGTGGCACACAATTCGCTGATT
GGTCAACGCATCTGCGGCATAACTGACCCGTTCGCTCTCTCGCGTTCTAT
TCAGCATATACATACACACATACATCGTCCTTTATTGCCTTACTACGCAA
AACCGCAGTCTCGTCACGAAACTGTTGTCGACGGGGAGAGCAAGCTACGC
CACCTCTCGACGCTAGTGGCCAAGGCGGAGATGAATAAAACGGCCTTGCG
AGCCGCGCGGGGGGCTCACAAGGACATCCTCGAGGCCACCGAGAAACTCA
GAGCCCTTCGCCATGAGGTCTCGGCGACCCGGAGAGCTCTCGCACCTTTG
GTCATGTCGTGCCCGTTCTGCCTCTGGAACTCCGCACCGCTATTTTCGTC
ACCTTGTACCGGGGGGGGAGGATGA
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Coding sequence (CDS) from alignment at chr_00:478892..479866+

>Ec-00_000310.1 ID=Ec-00_000310.1|Name=Ec-00_000310.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=411bp|location=Sequence derived from alignment at chr_00:478892..479866+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACAAAGGAGACATCAGCCGAAGTTGTTGTGGACGGGAGCCTGGAATA
CGAGGAGCGCGCGAAGTTCCTTCAGTTCGGGCTCTGCGGGCGATGTGATC
GAGTTTTCCGAATCAGCCAGGGGTGGAAACATGTCGAGCAGAAGTCTCGT
CACGAAACTGTTGTCGACGGGGAGAGCAAGCTACGCCACCTCTCGACGCT
AGTGGCCAAGGCGGAGATGAATAAAACGGCCTTGCGAGCCGCGCGGGGGG
CTCACAAGGACATCCTCGAGGCCACCGAGAAACTCAGAGCCCTTCGCCAT
GAGGTCTCGGCGACCCGGAGAGCTCTCGCACCTTTGGTCATGTCGTGCCC
GTTCTGCCTCTGGAACTCCGCACCGCTATTTTCGTCACCTTGTACCGGGG
GGGGAGGATGA
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Synonyms
The feature 'Ec-00_000310.1' has the following synonyms
Synonym
Esi1076_0001
Esi_1076_0001