Ec-00_000300.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_000300.1
Unique Name	Ec-00_000300.1
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	309

Homology

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BLAST of Ec-00_000300.1 vs. uniprot
Match: D7FZI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI4_ECTSI)

HSP 1 Score: 384 bits (987), Expect = 1.180e-124
Identity = 197/400 (49.25%), Postives = 265/400 (66.25%), Query Frame = 1

Query:  382 WRRSGVHGWFNDRRSSRAFTNEGGLPVVSMGFLCSSDAFNYLS-GNRQYSVRGTYLAPGCTSSALLRRLRSWWMVTVGVK-ARWEDEMGPLTSILHMLENGCRARMRTSDQESHTVLVRGGLQGLILDSPEHSDRTNTKNANGCTLRSCQRCKVPRSHLGNPRYDIRQNRRTAEGIDADIEYVKQGATKTERVERAKQRGVVVPKMSNPLKKLTFDRQLQVPFDILHADSLNKCGRMINYVLSACNADGLAVVSGRLSLRQLLPPNVSPFGDITTAGGWAGLTGMQKWILSSIFGLLFAPIFADVNSMEKYVCSAEIEAVATRIGSNCDTPRGNEKVCRAFRDLMEACSASTFMVRLGSYTGNELRVLEKWQREQVKQASRVVGLELGSFHKGLHIPDDI 1575
            WR+ G HGWF DRR+S    N  GLPV S G  CSSDAFNY S   ++YSV  T++  GC S ALLRRLRSW + T+G+  A WE ++ PL  I+ +L+NGC+A +   D+++ T LVR GL    LDSP HS  TN K+ N  T R+CQ C VPR  LGNPRYDI +N R+A+G+  D+  V     + E+++ ++  GVVVP+  NPL ++TFDR      D+LH  +LN   +++ +VL A ++ G  +V GR + R++LPPNVSP  DIT+AGGWA LTG Q W++SSIF  L APIF+  N ++ YV +  +  VA RI  N  TP G   VC AF+DL++ACS S+F+VR  S+T   LR L+K Q +QVKQ +RV+G+ LGS HKGLHI  ++
Sbjct:    4 WRQQGYHGWFFDRRASGVHANLTGLPVFSTGLACSSDAFNYFSLSGKRYSVNATFVGLGCLSPALLRRLRSWHLATLGLPGAAWELDVLPLMKIIRLLQNGCKAEIAVGDKQTITALVRMGLLTANLDSPMHSLWTNQKHHNAKTERACQACTVPRKDLGNPRYDIVKNARSADGLREDLALVASIEKRQEQLKMSRALGVVVPRYPNPLDEVTFDRVEGCGMDVLHQSALNAGKKIMTFVLDALDSAGSEIVRGRFAWRRMLPPNVSPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFSHPNLLDDYVRAMVVAEVADRIDVNSGTPAGKAAVCAAFQDLIKACSWSSFVVRSPSFTAEGLRTLQKSQIDQVKQVTRVMGVALGSIHKGLHIARNV 403

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BLAST of Ec-00_000300.1 vs. uniprot
Match: A0A6H5JTN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTN6_9PHAE)

HSP 1 Score: 298 bits (762), Expect = 1.080e-92
Identity = 206/484 (42.56%), Postives = 211/484 (43.60%), Query Frame = 1

Query:   55 ETQQGRPGGGVQSTGHLVVRVNPFVFRSDMPDGIKSKRRRDQDVESVWEVTNKEENVGVSALVGPCMVLPVGTNIPTPADGTASMPTFVGEGFAATTPRTRRLQVVKNVWRRSGVHGWFNDRRSSRAFTNEGGLPVVSMGFLCSSDAFNYLSGNRQYSVRGTYLAPGCTSSALLRRLRSWWMVTVGVKARWEDEMGPLTSILHMLENGCRARMRTSDQESHTVLVRGGLQGLILDSPEHSDRTNTKNANGCTLRSCQRCKVPRSHLGNPRYDIRQNRRTAEGIDADIEYVKQGATKTERVERAKQRGVVVPKMSNPLKKLTFDRQLQVPFDILHADSLNKCGRMINYVLSACNADGLAVVSGRLSLRQLLPPNVSPFGDITTAGGWAGLTGMQKWILSSIFGLLFAPIFADVNSMEKYVCSAEIEAVATRIGSNCDTPRGNEKVCRAFRDLMEACSASTFMVRLGSYTGNELRVLEKWQREQVK 1506
            ETQQGRPGGGVQSTGHLVVRVNPFVFRSDMPDGIKSKRRRDQDVESVWEVTN+EENVGVSAL                                                                                                                                                                VLVRG LQGLILDSPEHSDRTNTKNANGCTLRSCQRCKVPR HLGNPRYDIRQNRRTAEG+DA+IEYVKQGATKTE VERAKQRGVVVPK+S   KKLTFDRQLQ+PFDILHADSL                                                                                                         VCRAFRDLMEACSASTFMVRLGSYT  ELRVLEKWQREQVK
Sbjct:  174 ETQQGRPGGGVQSTGHLVVRVNPFVFRSDMPDGIKSKRRRDQDVESVWEVTNQEENVGVSAL----------------------------------------------------------------------------------------------------------------------------------------------------------------VLVRGRLQGLILDSPEHSDRTNTKNANGCTLRSCQRCKVPRRHLGNPRYDIRQNRRTAEGVDANIEYVKQGATKTEGVERAKQRGVVVPKVS---KKLTFDRQLQIPFDILHADSL---------------------------------------------------------------------------------------------------------VCRAFRDLMEACSASTFMVRLGSYTDAELRVLEKWQREQVK 389

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BLAST of Ec-00_000300.1 vs. uniprot
Match: A0A6H5JE27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE27_9PHAE)

HSP 1 Score: 286 bits (731), Expect = 5.690e-86
Identity = 174/338 (51.48%), Postives = 177/338 (52.37%), Query Frame = 1

Query:   55 ETQQGRPGGGVQSTGHLVVRVNPFVFRSDMPDGIKSKRRRDQDVESVWEVTNKEENVGVSALVGPCMVLPVGTNIPTPADGTASMPTFVGEGFAATTPRTRRLQVVKNVWRRSGVHGWFNDRRSSRAFTNEGGLPVVSMGFLCSSDAFNYLSGNRQYSVRGTYLAPGCTSSALLRRLRSWWMVTVGVKARWEDEMGPLTSILHMLENGCRARMRTSDQESHTVLVRGGLQGLILDSPEHSDRTNTKNANGCTLRSCQRCKVPRSHLGNPRYDIRQNRRTAEGIDADIEYVKQGATKTERVERAKQRGVVVPKMSNPLKKLTFDRQLQVPFDILHADSL 1068
            ETQQGRPGGGVQSTGHLVVRVNPFVFRSDMPDGIKSKRRRDQDVESVWEVTN+EENVGVSAL                                                                                                                                                                VLVRGGLQGLILDSPEHSDRTNTKNANGCTLRSCQRCKVPR HLGNPRYDIRQNRRTAEG+DADIEYVKQGATKTERVERAKQRGVVVPK+SNPLKKLTFDRQLQVPFDILHADSL
Sbjct:  391 ETQQGRPGGGVQSTGHLVVRVNPFVFRSDMPDGIKSKRRRDQDVESVWEVTNQEENVGVSAL----------------------------------------------------------------------------------------------------------------------------------------------------------------VLVRGGLQGLILDSPEHSDRTNTKNANGCTLRSCQRCKVPRRHLGNPRYDIRQNRRTAEGVDADIEYVKQGATKTERVERAKQRGVVVPKVSNPLKKLTFDRQLQVPFDILHADSL 568

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BLAST of Ec-00_000300.1 vs. uniprot
Match: D7FWW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW9_ECTSI)

HSP 1 Score: 270 bits (691), Expect = 2.910e-80
Identity = 141/307 (45.93%), Postives = 196/307 (63.84%), Query Frame = 1

Query:  655 ILHMLENGCRARMRTSDQESHTVLVRGGLQGLILDSPEHSDRTNTKNANGCTLRSCQRCKVPRSHLGNPRYDIRQNRRTAEGIDADIEYVKQGATKTERVERAKQRGVVVPKMSNPLKKLTFDRQLQVPFDILHADSLNKCGRMINYVLSACNADGLAVVSGRLSLRQLLPPNVSPFGDITTAGGWAGLTGMQKWILSSIFGLLFAPIFADVNSMEKYVCSAEIEAVATRIGSNCDTPRGNEKVCRAFRDLMEACSASTFMVRLGSYTGNELRVLEKWQREQVKQASRVVGLELGSFHKGLHIPDDI 1575
            I+  L+NGC+A     D+++ T LVR GL    LDSP HS  TN K+ N  T R+CQ C VPR  LGNP+YDI +N RTA+G+  D+  V     K +R + ++  GVVVP+  NP  ++ FDR      DILH  +LN   +++ +V+ A +  G  +V  R +  ++LPPNVSP  DIT+AGGW+ LTG Q W++SS F  L APIF+  +++ +YV +  +  VA RI  +  TP G   VC AF+DL++ACS S F+VR  S+T   LR L+K Q EQVKQA+RV+G+ LG+ HKGLHI  ++
Sbjct:    3 IIRRLQNGCKAEFSIGDKQTVTALVRLGLLTANLDSPLHSLWTNQKHHNAKTERACQACVVPRRDLGNPKYDIVKNARTADGLREDLSRVAATEKKQDRDKLSRALGVVVPRYPNPQDEVAFDRVEGCGMDILHQSALNSGKKIMGFVMDALDPAGSEIVRARFAWCRMLPPNVSPMADITSAGGWSALTGQQLWLVSSSFPFLLAPIFSSPDNLGRYVRTMVVTEVADRISVDPGTPAGKAAVCNAFQDLVKACSWSCFVVRSPSFTAEGLRALQKSQLEQVKQATRVMGVALGTIHKGLHIARNV 309

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BLAST of Ec-00_000300.1 vs. uniprot
Match: D7G4Y8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Y8_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 3.850e-59
Identity = 117/276 (42.39%), Postives = 166/276 (60.14%), Query Frame = 1

Query:  751 ILDSPEHSDRTNTKNANGCTLRSCQRCKVPRSHLGNPRYDIRQ-NRRTAEGIDADIEYVKQGATKTERVERAKQRGVVVPKMSNPLKKLTFDRQLQVPFDILHADSLNKCGRMINYVLSACNADGLAVVSGRLSLRQLLPPNVSPFGDITTAGGWAGLTGMQKWILSSIFGLLFAPIFADVNSMEKYVCSAEIEAVATRIGSNCDTPRGNEKVCRAFRDLMEACSASTFMVRLGSYTGNELRVLEKWQREQVKQASRVVGLELGSFHKGLHIPDDI 1575
            ++D PE   R + K+  G          +  S  G  +  IR    R  +G+  D+  V     K E ++ ++  GVVVP+  NPL ++TFDR      D+LH  +LN   +++ +VL A ++ G  +V GR + R++LPPNVSP  DIT+AGGWA LTG Q W++SSIF  L APIF+  N ++ YV +  +  VA RI  N  TP G   VC AF+DL++ACS S+F+VR  S+T   LR L+K Q +QVKQ +RV+G+ LGS HKGLHI  ++
Sbjct:   33 LVDEPEAPQRQDGKSVPG----------MHGSKEGPRQPQIRHCQERAFDGLREDLALVASIKKKQEHLKMSRALGVVVPRYPNPLDEVTFDRVEGCGMDVLHQSALNAGKKIMTFVLDALDSAGSEIVRGRFAWRRMLPPNVSPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFSHPNLLDDYVRAMVVAEVADRIDVNSGTPAGKAAVCAAFQDLIKACSWSSFVVRSPSFTAEGLRTLQKSQIDQVKQVTRVMGVALGSIHKGLHIARNV 298

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BLAST of Ec-00_000300.1 vs. uniprot
Match: A0A6H5K975_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K975_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 4.070e-48
Identity = 106/269 (39.41%), Postives = 148/269 (55.02%), Query Frame = 1

Query:  769 HSDRTNTKNANGCTLRSCQRCKVPRSHLGNPRYDIRQNRRTAEGIDADIEYVKQGATKTERVERAKQRGVVVPKMSNPLKKLTFDRQLQVPFDILHADSLNKCGRMINYVLSACNADGLAVVSGRLSLRQLLPPNVSPFGDITTAGGWAGLTGMQKWILSSIFGLLFAPIFADVNSMEKYVCSAEIEAVATRIGSNCDTPRGNEKVCRAFRDLMEACSASTFMVRLGSYTGNELRVLEKWQREQVKQASRVVGLELGSFHKGLHIPDDI 1575
            HS   N K+ N  T R+CQ C VPR  LGNP+YDI+   + +  +                       GVVVP+  NPL ++ FDR      DILH  +LN   +++ +V+ A +  G  +V                  DIT+AGG + LTG Q W++SSI   L APIF+  +++ +YV +  +  VA RI     TP G   VC AF+DL++ACS S F+VR  S+T   L VL+K Q+EQVKQA+RV+G+ LG+ HKGLHI  ++
Sbjct:    2 HSLWANQKHHNAKTERACQACVVPRRDLGNPKYDIKDREKLSRAL-----------------------GVVVPRYPNPLDEVAFDRVEGCGMDILHQSALNSGKKIMGFVMDALDPAGSEIVP-----------------DITSAGGRSALTGQQLWLVSSIVPFLLAPIFSSPDNLGRYVRTMVVTEVADRISVEPGTPAGKAAVCNAFQDLVKACSWSCFVVRSPSFTAEGLHVLQKSQQEQVKQATRVIGVALGTIHKGLHITRNV 230

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BLAST of Ec-00_000300.1 vs. uniprot
Match: D7FSA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA9_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 7.980e-42
Identity = 84/180 (46.67%), Postives = 117/180 (65.00%), Query Frame = 1

Query: 1042 FDILHADSLNKCGRMINYVLSACNADGLAVVSGRLSLRQLLPPNVSPFGDITTAGGWAGLTGMQKWILSSIFGLLFAPIFADVNSMEKYVCSAEIEAVATRIGSNCDTPRGNEKVCRAFRDLMEACSASTFMVRLGSYTGNELRVLEKWQREQV--KQASRVVGLELGSFHKGLHIPDDI 1575
            F +L   +LN   +++ +VL A ++    +V GR + R++LP NV P  DIT+AGGWA LTG Q W++SSIF  L APIF+  N ++ YV +  +  VA RI  N  TP G   VC AF+DL++ACS S+F+VR  S+T   L  L+K Q +QV  KQ +RV+G+ LGS HKGLHI  ++
Sbjct:    2 FLLLTQSALNAGKKIMTFVLDALDSAVSEIVRGRFAWRRMLPQNVLPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFSHPNLLDDYVRAMVVAEVADRIDVNSGTPAGKAAVCAAFQDLIKACSWSSFVVRSPSFTAEGLGTLQKSQIDQVQVKQVTRVMGVALGSIHKGLHIAPNV 181

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BLAST of Ec-00_000300.1 vs. uniprot
Match: A0A6H5KPX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX4_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 8.270e-33
Identity = 88/248 (35.48%), Postives = 125/248 (50.40%), Query Frame = 1

Query:  706 QESHTVLVRGGLQGLILDSPEHSDRTNTKNANGCTLRSCQRCKVPRSHLGNPRYDIRQNRRTAEGIDADIEYVKQGATKTERVERAKQRGVVVPKMSNPLKKLTFDRQ-------LQVP-------------FDILHA------------------------------DSLNKCGRMINYVLSACNADGLAVVSGRLSLRQLLPPNVSPFGDITTAGGWAGLTGMQKWILSSIFGLLFAPIFADVNSM 1299
            Q++   LVR GL    LDSP HS   N K+ N  T  +CQ C VPR  LGNP+YDI +N RTA+G+  D++ V     K +RV+ ++  GVVVP+  NPL ++  DR         Q+P             F   H                                +LN   +++ +V+ A +  G  VV  R + R++LPPNVSP  DIT+AGG + LTG Q W+++SIF  L APIF+  +++
Sbjct:   17 QDNVEALVRLGLLTANLDSPMHSLWANQKHHNAKT--TCQACVVPRRDLGNPKYDIVKNARTADGLKEDLDRVAATEKKQDRVKLSRALGVVVPRYPNPLHEVAIDRVDGCGMDGTQMPQVHIGRVADLVSQFSYTHKRDHIALLICSQNEQSDARITSQAACALTGESALNSGKKIMGFVMDALDPTGTEVVRARFAWRRMLPPNVSPIADITSAGGRSALTGQQLWLVASIFPFLLAPIFSSPDNL 262

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BLAST of Ec-00_000300.1 vs. uniprot
Match: D7FHE7_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHE7_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 2.780e-32
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 2

Query: 1292 TRWRNTCAPPRSRPWLPGSGRTVTHPVATRRYAGLSEISWKHAVRARSWCALARTQATS 1468
            T WRNTCAPPRSRPWLPGSGRTVTHPVATRRYAGLSEISWKHAVRARSWCALARTQATS
Sbjct:    3 TAWRNTCAPPRSRPWLPGSGRTVTHPVATRRYAGLSEISWKHAVRARSWCALARTQATS 61

[Close]

BLAST of Ec-00_000300.1 vs. uniprot
Match: A0A6H5KR91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR91_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 8.240e-29
Identity = 69/176 (39.20%), Postives = 101/176 (57.39%), Query Frame = 1

Query: 1048 ILHADSLNKCGRMINYVLSACNADGLAVVSGRLSLRQLLPPNVSPFGDITTAGGWAGLTGMQKWILSSIFGLLFAPIFADVNSMEKYVCSAEIEAVATRIGSNCDTPRGNEKVCRAFRDLMEACSASTFMVRLGSYTGNELRVLEKWQREQVKQASRVVGLELGSFHKGLHIPDDI 1575
            +L   +LN   +++ +++ A +  G  +V  R + R++LPPNVSP  DIT                  IF  L APIF+  +++ +YV +  +  VA RI    DTP G E VC  F+ L++ACS S F VR  S T     VL++ Q+EQVKQA+RV+G+ LG+ HKGLHI  ++
Sbjct:    3 LLTQSALNSDKKIVGFLMDARDPAGSEIVRARFAWRRMLPPNVSPIADIT-----------------HIFPFLLAPIFSSPDNLGRYVRTMVVTEVADRISVEPDTPAGKEAVCNTFQYLVKACSWSCFEVRSQSLTAEGFHVLQQSQQEQVKQATRVIGVALGTIHKGLHIARNV 161

The following BLAST results are available for this feature:

BLAST of Ec-00_000300.1 vs. uniprot

BLAST of Ec-00_000300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14


Match Name	E-value	Identity	Description
D7FZI4_ECTSI	1.180e-124	49.25	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JTN6_9PHAE	1.080e-92	42.56	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JE27_9PHAE	5.690e-86	51.48	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FWW9_ECTSI	2.910e-80	45.93	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7G4Y8_ECTSI	3.850e-59	42.39	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K975_9PHAE	4.070e-48	39.41	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FSA9_ECTSI	7.980e-42	46.67	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KPX4_9PHAE	8.270e-33	35.48	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FHE7_ECTSI	2.780e-32	98.31	Uncharacterized protein n=3 Tax=Ectocarpus silicul...	[more]
A0A6H5KR91_9PHAE	8.240e-29	39.20	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:461228..464680 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	1618
Hectar predicted targeting category	other localisation
Gene id	Ec-00_000300.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_000300	Ec-00_000300	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 461228..466265 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_000300.1	Ec-00_000300.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 461919..464680 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_000300.1.1	Ec-00_000300.1.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 461228..461948 +
Ec-00_000300.1.2	Ec-00_000300.1.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 462330..462677 +
Ec-00_000300.1.3	Ec-00_000300.1.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 462926..463156 +
Ec-00_000300.1.4	Ec-00_000300.1.4	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 463361..463561 +
Ec-00_000300.1.5	Ec-00_000300.1.5	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 464325..464409 +
Ec-00_000300.1.6	Ec-00_000300.1.6	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 464649..464680 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_000300	5UTR:Ec-00_000300.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_00 461228..461918 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_000300.1	CDS:Ec-00_000300.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 461919..461948 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:461228..464680+
coding sequence from alignment at chr_00:461228..464680+

mRNA sequence

>Ec-00_000300.1 ID=Ec-00_000300.1|Name=Ec-00_000300.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=309bp
MRTSDQESHTVLVRGGLQGLILDSPEHSDRTNTKNANGCTLRSCQRCKVP
RSHLGNPRYDIRQNRRTAEGIDADIEYVKQGATKTERVERAKQRGVVVPK
MSNPLKKLTFDRQLQVPFDILHADSLNKCGRMINYVLSACNADGLAVVSG
RLSLRQLLPPNVSPFGDITTAGGWAGLTGMQKWILSSIFGLLFAPIFADV
NSMEKYVCSAEIEAVATRIGSNCDTPRGNEKVCRAFRDLMEACSASTFMV
RLGSYTGNELRVLEKWQREQVKQASRVVGLELGSFHKGLHIPDDIRNLGS
HITKREAP*

spliced messenger RNA

>Ec-00_000300.1 ID=Ec-00_000300.1|Name=Ec-00_000300.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1618bp|location=Sequence derived from alignment at chr_00:461228..464680+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GGAAGAGGAAGAGGAAGGGGAAGAGGAAGAAGAAGCGGAAGAGGAAGGAG
AGGACGAAACCCAACAGGGGCGGCCGGGAGGTGGGGTCCAAAGCACTGGC
CATCTTGTTGTGCGTGTCAACCCATTCGTGTTCAGGAGCGACATGCCCGA
CGGTATCAAGAGCAAGCGCCGACGAGACCAAGATGTGGAGTCTGTTTGGG
AGGTCACGAACAAGGAGGAGAACGTCGGAGTGAGTGCACTGGTAGGTCCG
TGCATGGTGTTGCCGGTGGGTACCAACATACCTACGCCCGCCGATGGTAC
GGCCAGCATGCCGACCTTCGTCGGAGAAGGTTTTGCAGCTACAACCCCCC
GCACCAGGCGCTTGCAGGTGGTCAAGAACGTTTGGAGAAGGTCGGGGGTG
CACGGTTGGTTCAATGATAGGCGATCGTCAAGGGCATTCACAAACGAGGG
TGGTCTTCCCGTTGTATCGATGGGCTTCCTTTGTTCCAGCGATGCTTTCA
ACTACCTGTCTGGCAATAGGCAGTACAGTGTGCGCGGTACATATCTTGCC
CCGGGATGCACCTCTTCCGCTCTTCTCCGACGTCTGCGATCGTGGTGGAT
GGTCACTGTTGGAGTGAAAGCGCGATGGGAAGATGAAATGGGCCCCCTGA
CGTCTATTCTTCATATGCTCGAGAACGGCTGCCGCGCGCGCATGAGGACC
AGTGATCAGGAATCCCACACGGTGCTTGTGAGGGGAGGGCTACAAGGGCT
GATCCTCGACAGCCCGGAGCACAGCGACAGGACGAACACGAAGAATGCCA
ACGGTTGTACACTCCGGTCGTGCCAACGCTGCAAAGTACCACGTAGCCAT
CTCGGCAACCCGCGCTACGACATCCGGCAAAATCGGCGGACGGCCGAAGG
CATCGATGCCGATATCGAGTACGTCAAGCAAGGGGCCACCAAGACCGAGC
GCGTCGAGCGCGCGAAACAACGTGGCGTCGTGGTCCCCAAGATGTCCAAC
CCCCTGAAGAAGCTGACTTTCGATCGGCAGCTTCAGGTACCGTTCGACAT
CCTGCATGCGGACAGCCTGAACAAGTGCGGCCGCATGATCAATTACGTGC
TATCGGCGTGCAATGCCGACGGGCTCGCAGTTGTGTCCGGGCGGTTGTCT
CTGCGTCAGCTTCTCCCGCCGAACGTTTCGCCGTTCGGAGATATCACCAC
TGCTGGAGGATGGGCAGGCTTGACTGGAATGCAAAAGTGGATCCTGTCCA
GCATCTTCGGCCTGTTATTCGCACCGATATTCGCAGACGTCAACTCGATG
GAGAAATACGTGTGCTCCGCCGAGATCGAGGCCGTGGCTACCCGGATCGG
GTCGAACTGTGACACACCCCGTGGCAACGAGAAGGTATGCCGGGCTTTCC
GAGATCTCATGGAAGCATGCAGTGCGAGCACGTTCATGGTGCGCCTTGGC
TCGTACACAGGCAACGAGCTGAGGGTGCTGGAGAAGTGGCAAAGAGAGCA
GGTCAAGCAGGCATCGCGTGTGGTGGGGCTGGAGCTCGGATCGTTCCACA
AAGGTCTGCACATTCCCGACGATATTCGAAACCTTGGCTCTCACATCACC
AAGCGCGAAGCACCGTGA

protein sequence of Ec-00_000300.1

>Ec-00_000300.1 ID=Ec-00_000300.1|Name=Ec-00_000300.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=309bp
MRTSDQESHTVLVRGGLQGLILDSPEHSDRTNTKNANGCTLRSCQRCKVP
RSHLGNPRYDIRQNRRTAEGIDADIEYVKQGATKTERVERAKQRGVVVPK
MSNPLKKLTFDRQLQVPFDILHADSLNKCGRMINYVLSACNADGLAVVSG
RLSLRQLLPPNVSPFGDITTAGGWAGLTGMQKWILSSIFGLLFAPIFADV
NSMEKYVCSAEIEAVATRIGSNCDTPRGNEKVCRAFRDLMEACSASTFMV
RLGSYTGNELRVLEKWQREQVKQASRVVGLELGSFHKGLHIPDDIRNLGS
HITKREAP*

mRNA from alignment at chr_00:461228..464680+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_000300.1 ID=Ec-00_000300.1|Name=Ec-00_000300.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3453bp|location=Sequence derived from alignment at chr_00:461228..464680+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GGAAGAGGAAGAGGAAGGGGAAGAGGAAGAAGAAGCGGAAGAGGAAGGAG
AGGACGAAACCCAACAGGGGCGGCCGGGAGGTGGGGTCCAAAGCACTGGC
CATCTTGTTGTGCGTGTCAACCCATTCGTGTTCAGGAGCGACATGCCCGA
CGGTATCAAGAGCAAGCGCCGACGAGACCAAGATGTGGAGTCTGTTTGGG
AGGTCACGAACAAGGAGGAGAACGTCGGAGTGAGTGCACTGGTAGGTCCG
TGCATGGTGTTGCCGGTGGGTACCAACATACCTACGCCCGCCGATGGTAC
GGCCAGCATGCCGACCTTCGTCGGAGAAGGTTTTGCAGCTACAACCCCCC
GCACCAGGCGCTTGCAGGTGGTCAAGAACGTTTGGAGAAGGTCGGGGGTG
CACGGTTGGTTCAATGATAGGCGATCGTCAAGGGCATTCACAAACGAGGG
TGGTCTTCCCGTTGTATCGATGGGCTTCCTTTGTTCCAGCGATGCTTTCA
ACTACCTGTCTGGCAATAGGCAGTACAGTGTGCGCGGTACATATCTTGCC
CCGGGATGCACCTCTTCCGCTCTTCTCCGACGTCTGCGATCGTGGTGGAT
GGTCACTGTTGGAGTGAAAGCGCGATGGGAAGATGAAATGGGCCCCCTGA
CGTCTATTCTTCATATGCTCGAGAACGGCTGCCGCGCGCGCATGAGGACC
AGTGATCAGGAATCCCACACGGTGAGGAATATAGTCAGATGCGCGTAGTT
ACTTGGGGTTGGCACGCCGGCCGTCGGAACAATGTTCGGGCATCGTCCTA
TAACGTGTTGATGTCGAATGTTGTCGGAAAACGCAGGTAGATGTTGATTG
GTCGTAATGTGGTGTCGATACATACAAGGAGAGTTCTTACCGGTGGCGGA
CGCCAGCTCAAGAAATGACACCCGATGCGAAGGTGAAAGTAGGCTTCAAA
TACCAGGCGCCGGACGGTAGGAAACACCTCGTCGCATCTGCGTCTGGAAC
AGAACCAGTGAACGGTAGGATTTCGTAGTATTCATCCACGTCCAGCTTGC
ACGTCTGTACCAGTCCTTGATATGCCCCATCTTCATGATCTGTCGAACTC
AGGTGCTTGTGAGGGGAGGGCTACAAGGGCTGATCCTCGACAGCCCGGAG
CACAGCGACAGGACGAACACGAAGAATGCCAACGGTTGTACACTCCGGTC
GTGCCAACGCTGCAAAGTACCACGTAGCCATCTCGGCAACCCGCGCTACG
ACATCCGGCAAAATCGGCGGACGGCCGAAGGCATCGATGCCGATATCGAG
TACGTCAAGCAAGGGGCCACCAAGACCGAGCGCGTCGAGCGCGCGAAACA
ACGTGGCGTCGTGGTCCCCAAGATGTCCAACCCCCTGAAGAAGCTGACTT
TCGATCGGCAGCTTCAGGTACCGTTCGACATCCTGCATGCGGACAGCCTG
GTAAGTGGTTTCGTGTGTTGTCTGGGAACTACATCTGAATGTAGTAGACG
TTATGGCGTGTGCTCTAGAGAAACGTAGTGCGGCACATTTTGGTCGTGTC
ACCACCCACCCACCCCCTCACCCCTGCCCAACGTGTTTGCACATCCGGAT
CCAACCGTGATACGTGATCCTCCCCTCGCGTGTAACCCCATACCCTTCAT
TGCCCCCCCCCCCCCCCCCCATGCCCGTTCTACCTTCCTGATATCCAGAA
CAAGTGCGGCCGCATGATCAATTACGTGCTATCGGCGTGCAATGCCGACG
GGCTCGCAGTTGTGTCCGGGCGGTTGTCTCTGCGTCAGCTTCTCCCGCCG
AACGTTTCGCCGTTCGGAGATATCACCACTGCTGGAGGATGGGCAGGCTT
GACTGGAATGCAAAAGTGGATCCTGTCCAGCATCTTCGGCCTGTTATTCG
CACCGATATTCGCAGACGTCAACTCGATGGTTCGTGCATGTTGTGGACTT
AAACATTTTGGACTTCGTTCGCTCTAACCTATCTATCGTGCGCCTACCTA
GCATAGGACAACAGCGCGAATCGATTACGAGTGTTTGCTGGATTCCGACC
GCAAAACGAGGGTGCGTTATCACACCATCTCGGTTTCACGCCAATTCCTC
TGTCCGTTCCTTCGTGTGCATTGCCTATCCCAGGAGAAATACGTGTGCTC
CGCCGAGATCGAGGCCGTGGCTACCCGGATCGGGTCGAACTGTGACACAC
CCCGTGGCAACGAGAAGGTATGCCGGGCTTTCCGAGATCTCATGGAAGCA
TGCAGTGCGAGCACGTTCATGGTGCGCCTTGGCTCGTACACAGGCAACGA
GCTGAGGGTGCTGGAGAAGTGGCAAAGAGAGCAGGTGAAGCTAGATTTCC
ATGTCTGCTACGTTTGATCAGTTGTGTTTTTCTTCCGAAGTGTGTCTGTA
GCACAGGGCCTGCAGAGGGAGATCTCCACACTAAGTGTCCATTATAGTGT
AGAACGCTCGATACAGCCCTTTAGCGCGAACTGTCACTGAGGAGCTATGG
CATATAGTTCGGTTCCCCCAGTATACGTTGAGGTCAAAAATTGCAGTCGC
ATCGGCCGCTCCAGTACCTGTTCCACCAACAGCTGGCGCTGGCGCTTGGG
TAGGGTATGTTCCTCCCCCCCCCCCCCCCCCCCTCCCCTCCGCATCCCTC
ACAACTTTGCTTTTGATGTACTTCCAACAGAGGGTACGTTGTTGTTGTTG
TTGTTGTTGTTGTTTTTCACGCTGGGGTGAAGCCAACAGTGGGGCAACAG
TGGGGTAGAGATATCACGCACGCACACACGTCCGCGCCCCGCTGTATATC
CACGAGATTATGTTCATTTTGTGTTGTTCGTAACACAACGCTCGTAGCCG
TACCTAGTGCCGATGTGTTCTGTCACACAAGTGTTTTTGACGATGTCTGC
CGCGAGCCGCATTGAAAAAGTATCGGAAATTTCCCTCCGAACAGACTCGT
TTATACCAAACCATGCCTGATCGAAGTTTTGGCGTTTGTTCGGCGGGGGC
GAGGGTGCAGTCAAAGGGTCGTACGATATGGTTGCTTTTGCTTCGCTGTT
GGGCAATCATTGTGTCAATATCCGCCCTACCCGCTGCACTCCTCAAGGTC
AAGCAGGCATCGCGTGTGGTGGGGCTGGAGCTCGGATCGTTCCACAAAGG
TCTGCACATTCCCGACGATATTCGAAACCTTGGTGAGCTCCCTCTGTGTA
ACTTTCGCTGTAGGGTAGTGCCTCGGGTTGCTCGTTATTCTTCAAGTCCA
ACAAGTGATCGACTCTAACGTGGGGGGGGTGTTGTGCAAGCTCCCGGGGC
CCCTCCTGGGGGGGGGGGGGGGGGGGGTGTACTCATAGTCGTGCATGCCG
TAGTCATTTGACCATTGACCTCGCATCCCTACAAAGCCGGGACGGAGCAC
GCCGGGTTCTCACCGGACCAGGCTCTCACATCACCAAGCGCGAAGCACCG
TGA

Coding sequence (CDS) from alignment at chr_00:461228..464680+

>Ec-00_000300.1 ID=Ec-00_000300.1|Name=Ec-00_000300.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=927bp|location=Sequence derived from alignment at chr_00:461228..464680+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGGACCAGTGATCAGGAATCCCACACGGTGCTTGTGAGGGGAGGGCT
ACAAGGGCTGATCCTCGACAGCCCGGAGCACAGCGACAGGACGAACACGA
AGAATGCCAACGGTTGTACACTCCGGTCGTGCCAACGCTGCAAAGTACCA
CGTAGCCATCTCGGCAACCCGCGCTACGACATCCGGCAAAATCGGCGGAC
GGCCGAAGGCATCGATGCCGATATCGAGTACGTCAAGCAAGGGGCCACCA
AGACCGAGCGCGTCGAGCGCGCGAAACAACGTGGCGTCGTGGTCCCCAAG
ATGTCCAACCCCCTGAAGAAGCTGACTTTCGATCGGCAGCTTCAGGTACC
GTTCGACATCCTGCATGCGGACAGCCTGAACAAGTGCGGCCGCATGATCA
ATTACGTGCTATCGGCGTGCAATGCCGACGGGCTCGCAGTTGTGTCCGGG
CGGTTGTCTCTGCGTCAGCTTCTCCCGCCGAACGTTTCGCCGTTCGGAGA
TATCACCACTGCTGGAGGATGGGCAGGCTTGACTGGAATGCAAAAGTGGA
TCCTGTCCAGCATCTTCGGCCTGTTATTCGCACCGATATTCGCAGACGTC
AACTCGATGGAGAAATACGTGTGCTCCGCCGAGATCGAGGCCGTGGCTAC
CCGGATCGGGTCGAACTGTGACACACCCCGTGGCAACGAGAAGGTATGCC
GGGCTTTCCGAGATCTCATGGAAGCATGCAGTGCGAGCACGTTCATGGTG
CGCCTTGGCTCGTACACAGGCAACGAGCTGAGGGTGCTGGAGAAGTGGCA
AAGAGAGCAGGTCAAGCAGGCATCGCGTGTGGTGGGGCTGGAGCTCGGAT
CGTTCCACAAAGGTCTGCACATTCCCGACGATATTCGAAACCTTGGCTCT
CACATCACCAAGCGCGAAGCACCGTGA

Synonyms

The feature 'Ec-00_000300.1' has the following synonyms


Synonym
Esi1072_0001
Esi_1072_0001