Ec-00_000290.3 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR
Overview
Homology
BLAST of Ec-00_000290.3 vs. uniprot
Match: D7FLB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB4_ECTSI) HSP 1 Score: 389 bits (998), Expect = 5.630e-128 Identity = 208/282 (73.76%), Postives = 214/282 (75.89%), Query Frame = 2 Query: 392 VQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSDGFWEPGWMKCAAFMRPFGPRSSPHVAQGREAGRHDLHPLSAGELVGRRQRPEHGRDPEGSVPGRHCI*PCGRGKDRHMRILVGAILDLPLQAHRTGGWDSLEPDDVWGGGTVLFVDKVALPMVEVAIGLMKVIIDDEELDNMAMAIKRVRRWAVLEKGGSSNTVFQKEFFRRVFLWAHGAGQNLEGCLDITMETIGCTDYEALACPYLR 1237 VQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMS GFWEPG MKCAAFM L LS D + + R R + A++ AHRTGGWDSLEPDDVWGGGTVLFVDKVALPMVEVAIGLMKVIIDDEELDNMAMAIKRVRRWAVLEKGGSSNTVFQKEFFRRVFLWAHGA QNLEGCLDITMETIGCTDYEALACPYL+ Sbjct: 210 VQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSYGFWEPGGMKCAAFMM--------------------LESLS---------------DEDSDQSTDEIL----RAASRAVIAFDPAVV-AKTDAHRTGGWDSLEPDDVWGGGTVLFVDKVALPMVEVAIGLMKVIIDDEELDNMAMAIKRVRRWAVLEKGGSSNTVFQKEFFRRVFLWAHGASQNLEGCLDITMETIGCTDYEALACPYLK 451
BLAST of Ec-00_000290.3 vs. uniprot
Match: D8LNI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI2_ECTSI) HSP 1 Score: 225 bits (574), Expect = 2.330e-68 Identity = 123/185 (66.49%), Postives = 126/185 (68.11%), Query Frame = 2 Query: 392 VQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSDGFWEPGWMKCAAFM--RPFGPRSSPHVAQGREAGRHDLHPLSAGELVGRRQRPEHGRDPEGSVPGRHCI*PCGRGKDRHMRILVGAILDLPLQAHRTGGWDSLEPDDVWGGG 940 VQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMS GFWEPG MKCAAFM S + E++ R D P K MRILVGAILDLPLQAHRTGGWDS EPDDVWGGG Sbjct: 38 VQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSYGFWEPGGMKCAAFMMLESLSDEDSDQITD---------------EILRAASRAVIAFD------------PAVVAKTDDMRILVGAILDLPLQAHRTGGWDSFEPDDVWGGG 195
BLAST of Ec-00_000290.3 vs. uniprot
Match: D7FHA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA8_ECTSI) HSP 1 Score: 184 bits (466), Expect = 9.330e-54 Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 2 Query: 392 VQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSDGFWEPGWMKCAAFM 652 VQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSDGFWEPGWMKCAAFM Sbjct: 5 VQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSDGFWEPGWMKCAAFM 91
BLAST of Ec-00_000290.3 vs. uniprot
Match: D7G1E3_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E3_ECTSI) HSP 1 Score: 174 bits (441), Expect = 6.640e-47 Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 2 Query: 392 VQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSDGFWEPGWMKCAAFM 652 VQLVF+PMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMS GFWEPG MKCAAFM Sbjct: 212 VQLVFAPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSYGFWEPGGMKCAAFM 298
BLAST of Ec-00_000290.3 vs. uniprot
Match: D7FI40_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI40_ECTSI) HSP 1 Score: 164 bits (415), Expect = 9.070e-46 Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 2 Query: 998 MKVIIDDEELDNMAMAIKRVRRWAVLEKGGSSNTVFQKEFFRRVFLWAHGAGQNLEGCLDITMETIGCTDYEALACPYLR 1237 MKVIIDDEELDNMAMAIKRVRRWAVLEKGGSSNTVFQKEFFRRVFLWAHG GQNLEGCLDITMETIGCTDYEALACPYL+ Sbjct: 1 MKVIIDDEELDNMAMAIKRVRRWAVLEKGGSSNTVFQKEFFRRVFLWAHGGGQNLEGCLDITMETIGCTDYEALACPYLK 80
BLAST of Ec-00_000290.3 vs. uniprot
Match: D7G5N5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N5_ECTSI) HSP 1 Score: 53.5 bits (127), Expect = 7.760e-6 Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 2 Query: 959 KVALPMVEVAIGLMKVIIDD-EELDNMAMAIKRVRRWAVLEKGGSSNTVFQKE 1114 +V LP++E+AI MKV+ DD + D + RV RWA+LE+GGS N VFQKE Sbjct: 12 EVVLPLLELAIQQMKVLPDDGDSTDAFSKTRSRVNRWAILERGGSPNQVFQKE 64 The following BLAST results are available for this feature:
BLAST of Ec-00_000290.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-00_000290.3 ID=Ec-00_000290.3|Name=Ec-00_000290.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=172bpback to top spliced messenger RNA >Ec-00_000290.3 ID=Ec-00_000290.3|Name=Ec-00_000290.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1361bp|location=Sequence derived from alignment at chr_00:451881..454852+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon. GCCGTTTTGGTTGGGCCAGTTACTGTGTGGCAAATATCGATATTGTTCACback to top protein sequence of Ec-00_000290.3 >Ec-00_000290.3 ID=Ec-00_000290.3|Name=Ec-00_000290.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=172bp MRILVGAILDLPLQAHRTGGWDSLEPDDVWGGGTVLFVDKVALPMVEVAIback to top mRNA from alignment at chr_00:451881..454852+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Ec-00_000290.3 ID=Ec-00_000290.3|Name=Ec-00_000290.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2972bp|location=Sequence derived from alignment at chr_00:451881..454852+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Coding sequence (CDS) from alignment at chr_00:451881..454852+ >Ec-00_000290.3 ID=Ec-00_000290.3|Name=Ec-00_000290.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=516bp|location=Sequence derived from alignment at chr_00:451881..454852+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Synonyms
The feature 'Ec-00_000290.3' has the following synonyms
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