Ec-00_000180.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000180.1
Unique NameEc-00_000180.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length97
Homology
[Close]
BLAST of Ec-00_000180.1 vs. uniprot
Match: D7G3B4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3B4_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 5.550e-14
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:   49 MAHGNSNTAQRLDAPTPAHPQTPGVMSMGTGPQQSTA 159
            MAHGNSNTAQRLDAPTPAHPQTPGVMSMGTG QQSTA
Sbjct:    1 MAHGNSNTAQRLDAPTPAHPQTPGVMSMGTGQQQSTA 37
The following BLAST results are available for this feature:
BLAST of Ec-00_000180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3B4_ECTSI5.550e-1497.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:320989..321935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length291
Hectar predicted targeting categoryother localisation
Gene idEc-00_000180.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000180Ec-00_000180Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 320989..321935 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000180.1.3Ec-00_000180.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 320989..321005 -
Ec-00_000180.1.2Ec-00_000180.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 321085..321300 -
Ec-00_000180.1.1Ec-00_000180.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 321878..321935 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000180.1CDS:Ec-00_000180.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 320989..321005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000180.1Ec-00_000180.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 320989..321935 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000180.1 ID=Ec-00_000180.1|Name=Ec-00_000180.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=97bp
MTTSGGQPPPAVQQSIMAHGNSNTAQRLDAPTPAHPQTPGVMSMGTGPQQ
STAVQQSTAVQQSTAVQQSTVIKQSTAVQQSTPVQQGVSPYGGVVV*
back to top

spliced messenger RNA

>Ec-00_000180.1 ID=Ec-00_000180.1|Name=Ec-00_000180.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=291bp|location=Sequence derived from alignment at chr_00:320989..321935- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAACGAGCGGCGGTCAACCGCCCCCTGCTGTTCAGCAGAGCATCAT
GGCGCATGGCAACTCCAACACCGCGCAGCGATTGGATGCCCCTACCCCGG
CGCACCCGCAGACCCCGGGAGTCATGTCTATGGGCACCGGACCACAGCAG
TCCACTGCCGTCCAGCAGTCCACTGCCGTCCAGCAGTCCACTGCCGTCCA
GCAGTCCACTGTCATCAAGCAGTCCACTGCCGTGCAGCAGTCCACTCCCG
TCCAGCAGGGCGTCAGCCCGTATGGCGGGGTGGTCGTTTGA
back to top

protein sequence of Ec-00_000180.1

>Ec-00_000180.1 ID=Ec-00_000180.1|Name=Ec-00_000180.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=97bp
MTTSGGQPPPAVQQSIMAHGNSNTAQRLDAPTPAHPQTPGVMSMGTGPQQ
STAVQQSTAVQQSTAVQQSTVIKQSTAVQQSTPVQQGVSPYGGVVV*
back to top

mRNA from alignment at chr_00:320989..321935-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000180.1 ID=Ec-00_000180.1|Name=Ec-00_000180.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=947bp|location=Sequence derived from alignment at chr_00:320989..321935- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACAACGAGCGGCGGTCAACCGCCCCCTGCTGTTCAGCAGAGCATCAT
GGCGCATGGTGAGATGCTGCGGGTAGATCGTTTTCGTTTTGGGCATTAGG
CATGTCTGCCTTTATGCGTTCCGGGCCCACCTCGGGCCAAACGTCTATCT
TGAGAGCCGGCCGTGAGTCGAGGTCACTTGCAGCTTTGAGAGTGTTAGTT
GCATATCGACGGGAGCGTGTTGCTGGCCCGGGTGTTGGGCGTTCGTGGTA
CTAACGACTTGTAGCAGGTGGATATTCGCTCTCTCTTTTGAACTCAAACG
TCGACGGATCTACGTATTTCAGATTATTTATGGACATATCGATGGGTGGA
AGGTGGATGGATTTATGCGCCGAGACAGGCAGAGCTGCCGGATATCAACT
TTGCGAAGGCGCCGTTTTGAATCAATCCCATGCGGCAGCAGGATGGCCTG
TGGCTGCGAGTCAGTTTCCCTGGTACTCCAATGCCTTGGACAGTCTTTGA
AAGGTACATGGTCGGACGGCACGAACGTACGAGGGCGCGTTCGTTCCAAA
GAAGGTTTTGAAATGACGTGCACCCGCTAACGGTACTGACCCCAAAGTCC
TTATTTCCCTTTCCATCCATACGCGTGGTTCGAAGGCAACTCCAACACCG
CGCAGCGATTGGATGCCCCTACCCCGGCGCACCCGCAGACCCCGGGAGTC
ATGTCTATGGGCACCGGACCACAGCAGTCCACTGCCGTCCAGCAGTCCAC
TGCCGTCCAGCAGTCCACTGCCGTCCAGCAGTCCACTGTCATCAAGCAGT
CCACTGCCGTGCAGCAGTCCACTCCCGTCCAGCAGGGCGTCAGCCCGTAT
GGTGAGTGTGGTTGCTGATCTGGTTGAGCGTTATGTTTTGTTGCAACACC
GATTTGTTTACATATTCCTACTCCGCGTAGGCGGGGTGGTCGTTTGA
back to top

Coding sequence (CDS) from alignment at chr_00:320989..321935-

>Ec-00_000180.1 ID=Ec-00_000180.1|Name=Ec-00_000180.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=291bp|location=Sequence derived from alignment at chr_00:320989..321935- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACAACGAGCGGCGGTCAACCGCCCCCTGCTGTTCAGCAGAGCATCAT
GGCGCATGGCAACTCCAACACCGCGCAGCGATTGGATGCCCCTACCCCGG
CGCACCCGCAGACCCCGGGAGTCATGTCTATGGGCACCGGACCACAGCAG
TCCACTGCCGTCCAGCAGTCCACTGCCGTCCAGCAGTCCACTGCCGTCCA
GCAGTCCACTGTCATCAAGCAGTCCACTGCCGTGCAGCAGTCCACTCCCG
TCCAGCAGGGCGTCAGCCCGTATGGCGGGGTGGTCGTTTGA
back to top
Synonyms
The feature 'Ec-00_000180.1' has the following synonyms
Synonym
Esi047_0004
Esi_047_0004