Ec-00_000020.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000020.1
Unique NameEc-00_000020.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length65
Homology
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BLAST of Ec-00_000020.1 vs. uniprot
Match: D7FGP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGP4_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 4.400e-36
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 MQSTTKVDESLRRAWQIDGSLLGLSNEVAQAVGKKYALHAAEELGLRTKALGVEARLYKLVILT 192
            MQSTTKVDESLRRAWQIDGSLLGLSNEVAQAVGKKYALHAAEELGLRTKALGVEARLYKLVILT
Sbjct:    1 MQSTTKVDESLRRAWQIDGSLLGLSNEVAQAVGKKYALHAAEELGLRTKALGVEARLYKLVILT 64
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BLAST of Ec-00_000020.1 vs. uniprot
Match: D7FJ30_ECTSI (Catalase is an enzyme, present in all aerobic cells, that decomposes hydrogen peroxide to molecular n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ30_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.190e-24
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:   13 TKVDESLRRAWQIDGSLLGLSNEVAQAVGKKYALHAAEELGLRTKALGVEARLYKLVI 186
            TKVDES+RRAWQID SLLGLSNE AQAVGKKYALHAA +LGLR KALGVEARLYKLV+
Sbjct:   87 TKVDESVRRAWQIDASLLGLSNEFAQAVGKKYALHAAGKLGLRAKALGVEARLYKLVM 144
[Close]
BLAST of Ec-00_000020.1 vs. uniprot
Match: D7FJ33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ33_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.020e-8
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:   13 TKVDESLRRAWQIDGSLLGLSNEVAQAVGKKYALHAAEELGLRTKALG 156
            TKVDES+RRAWQIDGSLLGLSNE A + G++  L    + G  ++ LG
Sbjct:   88 TKVDESVRRAWQIDGSLLGLSNEFAPSRGEEVRLARCGKAGAESQGLG 135
The following BLAST results are available for this feature:
BLAST of Ec-00_000020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FGP4_ECTSI4.400e-36100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJ30_ECTSI1.190e-2487.93Catalase is an enzyme, present in all aerobic cell... [more]
D7FJ33_ECTSI1.020e-858.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:28573..29122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length195
Hectar predicted targeting categoryother localisation
Gene idEc-00_000020.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000020Ec-00_000020Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 28573..29122 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000020.1.2Ec-00_000020.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 28573..28582 -
Ec-00_000020.1.1Ec-00_000020.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 28938..29122 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000020.1CDS:Ec-00_000020.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 28573..28582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000020.1Ec-00_000020.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 28573..29122 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000020.1 ID=Ec-00_000020.1|Name=Ec-00_000020.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=65bp
MQSTTKVDESLRRAWQIDGSLLGLSNEVAQAVGKKYALHAAEELGLRTKA
LGVEARLYKLVILT*
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spliced messenger RNA

>Ec-00_000020.1 ID=Ec-00_000020.1|Name=Ec-00_000020.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=195bp|location=Sequence derived from alignment at chr_00:28573..29122- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTCTACCACGAAGGTGGACGAGAGCCTGCGTCGGGCGTGGCAGAT
CGACGGCTCCCTCCTCGGGCTCTCGAACGAGGTTGCTCAAGCCGTGGGGA
AGAAGTACGCCTTGCACGCCGCGGAAGAGCTGGGGCTCAGGACCAAGGCC
TTGGGCGTGGAGGCCAGGCTGTACAAGCTCGTGATACTGACGTAG
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protein sequence of Ec-00_000020.1

>Ec-00_000020.1 ID=Ec-00_000020.1|Name=Ec-00_000020.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=65bp
MQSTTKVDESLRRAWQIDGSLLGLSNEVAQAVGKKYALHAAEELGLRTKA
LGVEARLYKLVILT*
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mRNA from alignment at chr_00:28573..29122-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000020.1 ID=Ec-00_000020.1|Name=Ec-00_000020.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=550bp|location=Sequence derived from alignment at chr_00:28573..29122- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCAGTCTACCACGAAGGTGGACGAGAGCCTGCGTCGGGCGTGGCAGAT
CGACGGCTCCCTCCTCGGGCTCTCGAACGAGGTTGCTCAAGCCGTGGGGA
AGAAGTACGCCTTGCACGCCGCGGAAGAGCTGGGGCTCAGGACCAAGGCC
TTGGGCGTGGAGGCCAGGCTGTACAAGCTCGTGATGTGAGTCGGCAGGGA
TAAGAGAGACGCGTCATGTGCAACTGGATTGGGATGCAGCAGAGAAGCTG
TGAATATGCACATGTTCCTGTAGTCTTGAGACCGTGATTTTCCAGTAATT
GTTTTTTTTGTCAGTATGACCCAACGAATCCGTCTTATTTAGATTATTGA
TTTTTGGATTTTTGTAGCAATGAGTCCGTAGCGTCAGCGAAAGTTTGTTC
AGTTTTTCCACGATTTCATACAAAATGCTACAAGTATGCGTATACTAGGC
GGCCTCAGTTTCAGATTCAAAACCAATCCGCTTTTTTTGGACTCCCTTTC
AAAACTTAAATTTCATGTATGCATGTACTGGTGCATACAGACTGACGTAG
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Coding sequence (CDS) from alignment at chr_00:28573..29122-

>Ec-00_000020.1 ID=Ec-00_000020.1|Name=Ec-00_000020.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=195bp|location=Sequence derived from alignment at chr_00:28573..29122- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCAGTCTACCACGAAGGTGGACGAGAGCCTGCGTCGGGCGTGGCAGAT
CGACGGCTCCCTCCTCGGGCTCTCGAACGAGGTTGCTCAAGCCGTGGGGA
AGAAGTACGCCTTGCACGCCGCGGAAGAGCTGGGGCTCAGGACCAAGGCC
TTGGGCGTGGAGGCCAGGCTGTACAAGCTCGTGATACTGACGTAG
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Synonyms
The feature 'Ec-00_000020.1' has the following synonyms
Synonym
Esi1006_0002
Esi_1006_0002