mRNA_Ecto-sp6_S_contig10.568.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.568.1
Unique NamemRNA_Ecto-sp6_S_contig10.568.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.568.1 vs. uniprot
Match: A0A6H5KVP2_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP2_9PHAE)

HSP 1 Score: 442 bits (1137), Expect = 8.010e-138
Identity = 273/327 (83.49%), Postives = 283/327 (86.54%), Query Frame = 1 
Query:   70 LQPSQLPQHGRSGLTSLAPPPRIPSRPHSIQQXXXXXXXXXXXXXXXXGQREQDGRRHLQQQHQHEDTLSALYLHQPPDSLTAPIVDMFRGDGVGGGGTRRRGAIEPGGGNLGPLGAVGAGGSGQDYEPRVSRLNSDHDRQIQQQMSGLGGALAQQRQRXXXXXXXXXXXXXXXXXX----DLNAMWDDLQAERALPQAKKLQNQQQMSGAVLRNDPRLDQRLDPWGDQGSNNNGNNNHPRHDQQLQGSGALSGLGIDPQRLGGFGGGLSEAAPSPPRGLLFKTLQSQXXXXXXXKPQQGVSRFGSSGLDGFLGGVPPPRDDSMFYD 1038
            LQPSQLP HGRSGL SL PPPRIPSRP     XXXXXXXXXXXXXXXX              HQHED LSALYLHQPPDSLTA  VDMFRGDG GGGGT+RR  +EPGGGNLGPLGAVGAGG+GQDYEPR SRLNSDHDRQ+QQQ+SGLGGALAQQR  XXXXXXXXXXX           DLNAMWDDLQAERALP AKKLQNQQQM GAV+RNDPRLDQRLDPWGDQGSNN+GNN+HPRHDQQLQGSGALSGLGIDPQRLGGFGGGLSEAAPSPPRGLLFKTLQSQXXXXXXXKPQQGVSRFGSSGLDGFLGG+PPPRDDS+FYD
Sbjct: 1565 LQPSQLPPHGRSGLASLVPPPRIPSRPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HQHEDALSALYLHQPPDSLTATTVDMFRGDGAGGGGTQRRVGMEPGGGNLGPLGAVGAGGNGQDYEPRESRLNSDHDRQLQQQISGLGGALAQQRXXXXXXXXXXXXXGRSVVVGGXGGDLNAMWDDLQAERALPHAKKLQNQQQMGGAVVRNDPRLDQRLDPWGDQGSNNSGNNSHPRHDQQLQGSGALSGLGIDPQRLGGFGGGLSEAAPSPPRGLLFKTLQSQXXXXXXXKPQQGVSRFGSSGLDGFLGGMPPPRDDSLFYD 1890
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVP2_9PHAE8.010e-13883.49PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1559838..1561019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1182
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionnucleotidyltransferase family protein
Ec32 orthologEc-15_003420.2
Cds size1008
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348693.6836247-UTR-Ecto-sp6_S_contig10:1559837..15598701682348693.6836247-UTR-Ecto-sp6_S_contig10:1559837..1559870Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 1559838..1559870 +
1682348693.7065842-UTR-Ecto-sp6_S_contig10:1560878..15610191682348693.7065842-UTR-Ecto-sp6_S_contig10:1560878..1561019Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 1560879..1561019 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348693.6983736-CDS-Ecto-sp6_S_contig10:1559870..15608781682348693.6983736-CDS-Ecto-sp6_S_contig10:1559870..1560878Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1559871..1560878 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.568.1prot_Ecto-sp6_S_contig10.568.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1559871..1560878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.568.1

>prot_Ecto-sp6_S_contig10.568.1 ID=prot_Ecto-sp6_S_contig10.568.1|Name=mRNA_Ecto-sp6_S_contig10.568.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=336bp
MALTQQQQQQQQLQPSQLPQHGRSGLTSLAPPPRIPSRPHSIQQQQQQQQ
QQRQHLSPPPGQREQDGRRHLQQQHQHEDTLSALYLHQPPDSLTAPIVDM
FRGDGVGGGGTRRRGAIEPGGGNLGPLGAVGAGGSGQDYEPRVSRLNSDH
DRQIQQQMSGLGGALAQQRQRDRQQQPRGGGVVVGGGGGDLNAMWDDLQA
ERALPQAKKLQNQQQMSGAVLRNDPRLDQRLDPWGDQGSNNNGNNNHPRH
DQQLQGSGALSGLGIDPQRLGGFGGGLSEAAPSPPRGLLFKTLQSQQQPP
PPPKPQQGVSRFGSSGLDGFLGGVPPPRDDSMFYD*
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mRNA from alignment at Ecto-sp6_S_contig10:1559838..1561019+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.568.1 ID=mRNA_Ecto-sp6_S_contig10.568.1|Name=mRNA_Ecto-sp6_S_contig10.568.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1182bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1559838..1561019+ (Ectocarpus species6 EcLAC_371)
GGTGGCGGTGGCGGCCGCGGTGGCGGCCGCGGTATGGCCCTCACTCAACA
GCAGCAGCAGCAGCAGCAACTCCAGCCCTCTCAGCTCCCGCAGCACGGCA
GATCCGGCTTGACCTCGTTGGCGCCGCCTCCCAGGATTCCCTCCAGGCCG
CACTCCATACAACAGCAGCAGCAGCAGCAGCAGCAGCAGAGGCAGCACCT
CTCGCCTCCCCCCGGCCAGCGGGAGCAAGACGGCCGGCGACACCTCCAGC
AGCAGCACCAGCACGAGGATACCCTCTCGGCGCTGTACCTCCACCAGCCG
CCTGACAGTCTCACGGCGCCAATCGTAGACATGTTCCGTGGCGACGGCGT
AGGCGGGGGGGGTACGCGGAGGAGAGGCGCGATCGAACCAGGGGGTGGGA
ACCTTGGCCCCCTCGGGGCGGTGGGCGCTGGTGGAAGTGGGCAAGACTAT
GAGCCGAGAGTATCGCGGCTTAACTCGGATCACGACCGGCAAATCCAGCA
GCAGATGTCGGGGCTTGGGGGCGCCCTGGCTCAGCAGCGGCAGCGGGACC
GGCAGCAGCAGCCGCGTGGTGGCGGTGTGGTAGTCGGAGGAGGGGGAGGA
GATCTGAACGCCATGTGGGACGACCTCCAGGCGGAGCGCGCGCTTCCCCA
GGCCAAGAAGCTCCAGAACCAGCAACAGATGAGCGGCGCCGTTCTGCGTA
ACGATCCGCGGCTCGATCAACGGCTGGACCCCTGGGGGGACCAAGGCAGC
AACAACAACGGCAACAACAACCACCCCCGCCACGACCAGCAGCTCCAGGG
CAGTGGCGCCCTGTCGGGGCTAGGGATCGATCCTCAGCGGCTCGGTGGCT
TTGGCGGGGGCCTCTCGGAAGCCGCCCCGTCTCCCCCCCGCGGGCTCCTG
TTCAAGACCCTCCAGTCACAGCAGCAGCCACCGCCACCGCCGAAGCCGCA
GCAGGGCGTCTCGCGGTTCGGTTCCTCCGGGTTGGACGGCTTCCTTGGCG
GCGTGCCGCCGCCGAGGGACGACTCCATGTTCTATGACTAGCCCGCCCCC
TGGTTGGACTCATGAGAATGACAGCTGCGGAGGGAGGTGCGCTTGTTCAG
GTGCCGGTGTTGCAACTTGTTGTGGTGTCGGGATTGGAGAAGGTGAGGGT
TAGCGGGGAGCCGGGGAGAGCAGCGTTCGAGC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1559838..1561019+

>mRNA_Ecto-sp6_S_contig10.568.1 ID=mRNA_Ecto-sp6_S_contig10.568.1|Name=mRNA_Ecto-sp6_S_contig10.568.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1008bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1559838..1561019+ (Ectocarpus species6 EcLAC_371)
ATGGCCCTCACTCAACAGCAGCAGCAGCAGCAGCAACTCCAGCCCTCTCA
GCTCCCGCAGCACGGCAGATCCGGCTTGACCTCGTTGGCGCCGCCTCCCA
GGATTCCCTCCAGGCCGCACTCCATACAACAGCAGCAGCAGCAGCAGCAG
CAGCAGAGGCAGCACCTCTCGCCTCCCCCCGGCCAGCGGGAGCAAGACGG
CCGGCGACACCTCCAGCAGCAGCACCAGCACGAGGATACCCTCTCGGCGC
TGTACCTCCACCAGCCGCCTGACAGTCTCACGGCGCCAATCGTAGACATG
TTCCGTGGCGACGGCGTAGGCGGGGGGGGTACGCGGAGGAGAGGCGCGAT
CGAACCAGGGGGTGGGAACCTTGGCCCCCTCGGGGCGGTGGGCGCTGGTG
GAAGTGGGCAAGACTATGAGCCGAGAGTATCGCGGCTTAACTCGGATCAC
GACCGGCAAATCCAGCAGCAGATGTCGGGGCTTGGGGGCGCCCTGGCTCA
GCAGCGGCAGCGGGACCGGCAGCAGCAGCCGCGTGGTGGCGGTGTGGTAG
TCGGAGGAGGGGGAGGAGATCTGAACGCCATGTGGGACGACCTCCAGGCG
GAGCGCGCGCTTCCCCAGGCCAAGAAGCTCCAGAACCAGCAACAGATGAG
CGGCGCCGTTCTGCGTAACGATCCGCGGCTCGATCAACGGCTGGACCCCT
GGGGGGACCAAGGCAGCAACAACAACGGCAACAACAACCACCCCCGCCAC
GACCAGCAGCTCCAGGGCAGTGGCGCCCTGTCGGGGCTAGGGATCGATCC
TCAGCGGCTCGGTGGCTTTGGCGGGGGCCTCTCGGAAGCCGCCCCGTCTC
CCCCCCGCGGGCTCCTGTTCAAGACCCTCCAGTCACAGCAGCAGCCACCG
CCACCGCCGAAGCCGCAGCAGGGCGTCTCGCGGTTCGGTTCCTCCGGGTT
GGACGGCTTCCTTGGCGGCGTGCCGCCGCCGAGGGACGACTCCATGTTCT
ATGACTAG
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