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Homology
BLAST of mRNA_Ecto-sp6_S_contig98.18806.1 vs. uniprot
Match: D8LEL3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL3_ECTSI) HSP 1 Score: 518 bits (1334), Expect = 2.130e-182 Identity = 332/341 (97.36%), Postives = 334/341 (97.95%), Query Frame = 1
Query: 1 MTVGPPSDTSAPKDPRTSITSAPEDFGELAPFVFVGCDHERRVGDLLARYDQGIDIPLPRNHSDVVRTRAAKSAEGRRRVALHSSEEATRPFSRLNREKTTHLLMAREQKSRREVEKARNASLSDRGIDDTLAQEIRGLNALEQARHPRLQAVPLLSRSASSAGSKQQGRSRREMARITDAFGLVEDDDHRAAVVSVQGEALDDAWIALLGSTLENNHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGLLKSGRCSLKALNLAGATPRPASIMQSGSGIQEDLADKCIRAPGAAALALALWEPVPRSGVCSLLSLNLAFQR 1023
MTV PPS+ SAPKDPRTSITSAPEDFGELAPFVFV CDHERRVGD LARYDQGIDIPLPRNHSDVVRTRAAKSAEGRRRVALHSSEEATRPFSRLNREKTTHLLMAREQ+SRREVEKARNASLSDRGIDDTLAQEIRGLNALEQARHPRLQAVPLLSRSASSAGSKQ GRSRREMARITDAFGLVEDDDHRAAVV VQGEALDDAWIALLGSTLENNH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGLLKSGRCSLKALNLAGATPRPASIMQSGSGIQEDLADKCIRAPGAAALALALWEPVPRSGVCSLLSLNLAFQR
Sbjct: 1 MTVDPPSNPSAPKDPRTSITSAPEDFGELAPFVFVRCDHERRVGDRLARYDQGIDIPLPRNHSDVVRTRAAKSAEGRRRVALHSSEEATRPFSRLNREKTTHLLMAREQRSRREVEKARNASLSDRGIDDTLAQEIRGLNALEQARHPRLQAVPLLSRSASSAGSKQ-GRSRREMARITDAFGLVEDDDHRAAVVRVQGEALDDAWIALLGSTLENNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGLLKSGRCSLKALNLAGATPRPASIMQSGSGIQEDLADKCIRAPGAAALALALWEPVPRSGVCSLLSLNLAFQR 340
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1095 |
| Hectar predicted targeting category | other localisation |
| Exons | 8 |
| Ec32 ortholog description | Hypothetical leucine rich repeat protein |
| Ec32 ortholog | Ec-23_002580.1 |
| Cds size | 1095 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1682350607.6122775-CDS-Ecto-sp6_S_contig98:616254..616512 | 1682350607.6122775-CDS-Ecto-sp6_S_contig98:616254..616512 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig98 616255..616512 + |
| 1682350607.6235483-CDS-Ecto-sp6_S_contig98:616826..616988 | 1682350607.6235483-CDS-Ecto-sp6_S_contig98:616826..616988 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig98 616827..616988 + |
| 1682350607.6443036-CDS-Ecto-sp6_S_contig98:617799..617880 | 1682350607.6443036-CDS-Ecto-sp6_S_contig98:617799..617880 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig98 617800..617880 + |
| 1682350607.6552308-CDS-Ecto-sp6_S_contig98:618580..618759 | 1682350607.6552308-CDS-Ecto-sp6_S_contig98:618580..618759 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig98 618581..618759 + |
| 1682350607.6644602-CDS-Ecto-sp6_S_contig98:619582..619704 | 1682350607.6644602-CDS-Ecto-sp6_S_contig98:619582..619704 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig98 619583..619704 + |
| 1682350607.6744153-CDS-Ecto-sp6_S_contig98:620105..620175 | 1682350607.6744153-CDS-Ecto-sp6_S_contig98:620105..620175 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig98 620106..620175 + |
| 1682350607.685809-CDS-Ecto-sp6_S_contig98:621084..621234 | 1682350607.685809-CDS-Ecto-sp6_S_contig98:621084..621234 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig98 621085..621234 + |
| 1682350607.6940084-CDS-Ecto-sp6_S_contig98:622243..622316 | 1682350607.6940084-CDS-Ecto-sp6_S_contig98:622243..622316 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig98 622244..622316 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig98.18806.1 >prot_Ecto-sp6_S_contig98.18806.1 ID=prot_Ecto-sp6_S_contig98.18806.1|Name=mRNA_Ecto-sp6_S_contig98.18806.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=365bp
MTVGPPSDTSAPKDPRTSITSAPEDFGELAPFVFVGCDHERRVGDLLARY DQGIDIPLPRNHSDVVRTRAAKSAEGRRRVALHSSEEATRPFSRLNREKT THLLMAREQKSRREVEKARNASLSDRGIDDTLAQEIRGLNALEQARHPRL QAVPLLSRSASSAGSKQQGRSRREMARITDAFGLVEDDDHRAAVVSVQGE ALDDAWIALLGSTLENNHKIHTLLLNRNSIGDQGVALLARSLRINDSVET LSLGGNRVTDEGARRLAGLLKSGRCSLKALNLAGATPRPASIMQSGSGIQ EDLADKCIRAPGAAALALALWEPVPRSGVCSLLSLNLAFQRVWDAGAIAL AVTLKRPGCHLEVR* back to topmRNA from alignment at Ecto-sp6_S_contig98:616255..622316+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig98.18806.1 ID=mRNA_Ecto-sp6_S_contig98.18806.1|Name=mRNA_Ecto-sp6_S_contig98.18806.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6062bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:616255..622316+ (Ectocarpus species6 EcLAC_371) ATGACAGTCGGCCCCCCCAGTGACACAAGTGCTCCTAAAGACCCACGCAC
GTCAATCACCAGTGCTCCCGAGGACTTCGGCGAACTGGCCCCTTTCGTTT
TCGTTGGATGCGACCATGAACGTCGCGTGGGCGACCTACTGGCCCGATAC
GATCAAGGGATCGACATCCCTCTTCCTCGCAACCACTCCGATGTGGTCAG
GACTCGAGCTGCAAAGTCGGCCGAGGGCAGACGACGCGTAGCGCTGCATT
CGTCGGAGGTGGGTGCTGTTTGACCCACGCATCCCATGCATATACTTCCG
CTAGACACACGACTTTTTCCAATAATATGAACAACGACAACACTTCATGT
AGATGTATTGAACAATCGCCAGGTCGGGTGCGTGGTAGGTACAGTAGCCA
AGCTGACATGGTTCGTGAGGACGTTGGGGGGCGAACATACGTAATGCCCT
ATGTGAGTGCAGAGAGATACCCCAAAAGGGCAACTTTCCCGCTGGAAAGT
GATGTCAATAGTACGCAATGATGAGCTGATCTTCTTTCAATGCCCCTTCC
TCCGCACCGGCTTTGCTTGTAGGAAGCCACCAGACCCTTCTCCCGCCTCA
ATCGGGAGAAGACGACTCACCTCTTGATGGCGAGGGAGCAGAAAAGCCGG
CGGGAGGTGGAAAAGGCGAGGAACGCGTCCCTCAGTGATCGAGGCATCGA
CGACACGTTAGCACAGGAGATTCGAGGTCTTAATGTGAGATGTGGTGCGC
AGAATGTTGAGGTCCACGGGAAAACTCAAATGAGGTGATCGCCGAAAAAA
AGCTCCCTCAAAGTTAGATACAACCTGGTATGATGAGTTGCATGATGCGT
CAATGATTCAAGACTGCTACCGCCTCTGCAGCCGCAGTGGCTGTCTTGTT
GGCAGGCCCCCTTTGAAATTTCCGAAATGTTGGACCCTGTCTTCCACCGC
AACGCAAACGGTCGCCCCGGTGGTCTAGGTAGTATCTTCGCAACCTTCTA
GAGGTCAGGTCAGGGGGTCGAGTCCCGGCGTAGGCGAGCTTTTCTTGCAA
AGTGAGTTTTTCTCTCGCTTCCGCTCCTGGCCTACAGGATAGCGCTAGTT
CGTGTGTGTACACAGAGGGAAGAGAGTGCTGAACTCTTCTCGCATTAAAA
ATCGAAGGCAAAGTACCGCAGTAGGGGAGGGTAGAGAGGGGCTCTTCTGT
GTGACCACGGGTTGGAGTCAACGGCACTAGTGCTGTGAGCGCTGATTTAA
AGTGAAGACAAAAAAAAAAAAAAAAAACGGCACAACATCAGCACCGGATG
CTGGAGCAAAGCTCAAAGCTCAATGGTGTCGAAATCCTGGATCTTGATTG
ACCACCCTACCGACACGGGCAGATAAACAGAGGGACTCCATTGGAGGCAT
AGCAATAATCATCAAACGTGGGAGCTACGAGCAAAACAATGCCGGCAATC
CTATTCGCACTGCTGTCCTGCGATGGCCCTGAGCATCTCCGCTGTACCCC
TCGCCAATGCATGCTCTGTGTCCTCGACTACCGGTTCGTATTTAGGCGCT
GGAGCAAGCTCGGCACCCCCGTCTGCAGGCCGTGCCGTTGTTGTCGAGGT
CGGCGTCTAGCGCGGGATCGAAACAGGTGCGTACAAGCAGCCGCTCCGTG
AGGGAGTGGACTGTTCCCGTTGACAAAGAATAGTCAGGCAACACCTGAAA
ATCAGCCACCATGTCATGCAGTTCACAAACCAAGTACAACACACACCACG
GCCGAAGACGTTTATTCCTGGTGACCGAAACGTATTGCCTAATGTCATAC
GAGGTCGGTCGGTAGGCGCCGAACGCGCAGTCGAGCCAAGCGAGCAACGT
AGTTGGCCGCTGTTGCGGCTAGCGAGACGCTGGCGTACAGCAGTGCAACT
CAAACACACCACCGCACCACAAGGCTGCGGAATCTTGTCTTCCGGTTGCC
CGTGACAATCGGGCATGCTCTGTTTTCCGTACTACGCAGCAGTCACTTGC
ACTGCATTAGTTGCCTCCAAGAAGAGCCTCCTGGGACGTTTAGGCAATGG
CGACAAAAGAAGACCAGACTAACCAACCTGAAAACCGCACCAAAGATCGA
AAAACAAACAGATTGCGCCAACAACCGCTTTTTAGTTGACGGAGATCATG
TGCTCTTGATCCCTACGCGGTACTGGAATTCGAGCATGTCCAGATGAAGC
AACAGCAGACCAACAGAGAGTTTTCGTCTCTCGTGGAGGCGCATGAACCG
TAGACGTACGGGTCCGCTCGTGCATTGAATCGTGTTCTTTTTTTGTCCGC
TCGTCCTCATCCGGCGACAAACCAAGCAGGGACGGAGTCGCCGCGAGATG
GCGCGCATCACCGATGCGTTCGGGTTAGTCGAGGATGACGACCACCGGGC
GGCCGTGGTCAGCGTGCAGGGCGAAGCACTGGACGATGCCTGGATAGCCC
TTCTCGGCAGCACCTTGGAGAACAACCACAAGATTCACACCTTGTTGCTC
AACCGGTGAGGCCAAGAGTTTCGGGGGAATTCTTGGCGACAAAGAAAGGC
CGTGCAACAACTCGTCTCTCAGCTCCCCCACCGCCGCGGTGGTGCATCAG
ACGAGCGAGGTTTGACTACATCCTGTGTGGACGGAAGCCGAACGCGGGTT
TCGGCGGTTAGGGATCCAATCGCCGCCTAATAGTCTGATGAAGAGCCCCA
CGTTCATCAAAAGGATGACTTAAACCTCCGTGAAGAACAGTTGAACTTGG
ACTTTCGAAGACCGATGGCGAGGAAGGCCACCGTTATTGCGGTCTTGCCG
TCCGTGTAGACTTACCGTTGAACATGTGGCCCGATCATTCGTTGGAATGG
TCGTCACCATTGGCAGAGGTCAAGAACCTACGACCTGCAGAGCAGCGATA
GGCCGGCGCTTGTTGTTCTACGGCAACATTGCATCGATACTACGAGGGCT
CAAAGGGGCGCAACGGTTCGCACGGAAGTGCCGCAAGAACAGGAAGAAGC
ACACGCACTTTTGTTGCACCGGAGAGAAGGTTGCGCGGCGTAGTGGTTTT
CGATCGAGACAAGAACGAATTGGTTCTAGCAAAGATTGCACCCTATACGC
CAGGCTTCGGACTCGAACGTCAAACACCTTGGACAACCGCACTGCATGAA
GCAGGGGGGAAAACGTTGGCAAACCGCACAAAACAAATCAAGAAAAACCA
TCACACTAACTCTTCCTAAAATGAAAGCAGCAAGTAAGAAACACTAATCC
GACCTAGGAAGTACTTGTGAGGTGGTGCGTGATTACGTCACCACGACGCC
CCCAACCTGCCGCGTGAACGACAACCAGCAATTCCATCGGAGACCAGGGC
GTGGCGTTGCTGGCGAGATCCCTTCGCATCAACGACTCGGTCGAAACCCT
TTCTTTGGGCGGCAACCGCGTGACGGACGAGGGGGCCCGGAGGCTGGCAG
GTGATTAATTGTATAGCTTTTTTCACGTACACAGAAGAGAGGGAGAGAGG
AAGAATCAACCTGGGGGTCGGCAGTAAAGTGCAAGTGTGATACATGCCTG
GCCTACTTCAGCTGCTGCAGACGCAAGACAAAAAACGGGCGCTTGAAGCT
AGTTTGGAGTTGTAGGCACAGATATTACTCTAGCTTTCCTCTTTCTATTG
AACGTTACGCTCCCCAGGCGTCGCTAAAGGGTCAAGAATAGTGATACCTG
AGTACAGGGAACGCCTGAACAACAGGAATCCTCAACCCCAAGGCTGCCTG
GATGTCTCCCCCTGAATATTGTTCGATGACACTGAAGCCACCATATCTTG
GTGGGCGTTGCGGGCGCTATCGTCGTGGTGGCTTGGCATTTTCTCTGCCA
GGCTTGTTGAAGAGCGGTCGGTGTTCGCTGAAGGCGCTCAACCTTGCAGG
AGCCACCCCGCGCCCCGCCAGGTTAGGCCGGTCGACTGCTCGCTTCCCAA
TACGGCATCCTCCTTGCCTGTTCGTACCCCTTTCGGAAACAATCATTCAT
TCGCAAGGACTCTGAATACAAGGGTACTTGGCGGTTGCAGCGACTCGCTC
GGGTCAAAGCCGTAGCAACATACGTTGCAGTATAATCAACCAAAAATTAC
TGCTGCTTCCCTGAAGCACCCTTTGGTACACGAAAGCCGCATACTTTCTG
GGCTTGGTTGGGCGACAAGCAGGTACGATGGGTTGCTGCTGCCCGCCCAT
AGTTTTTGCCAAGAATTGTGGTGCCCATCTCTGTACTCTTCGGATCAAGG
GTTCAACGATGGGCGCCTGACTTACGTAGCGACAGGGTATAGGGACGTGT
TCGATGCTTTCACCCCGCTCGCCCGTTCGGACACACGCGGACACGTACAC
CTTAGATACTCGGGCGTTGGTCAGCAGGTTGTCGCGATTGACACTAGCTG
CGAGATACGATCGACATTAGCTGCGAGACATGATCACGCACACACACACA
TGGCTGCCTTGGTAGACCCGTGCAGTCCTCTTCTGTTGCTACCGTTTCTG
TCTTTCATCCGGAGAATAACTTAACCTCCCCCATGCCGCCCCCTCACGGG
GTCCCAGTTCATGGAATATAGAAGGGTTTCGTGTTTTCAACCAGACTGAG
ACTGACGTCTTTTCATTGGTCAGACGGTTAACACGGCCGGTGCTAACAAT
ATTCACATACACACATAAGTCACACGTCGGTCCCTGGCGATCATCTTCTG
CTTCTTGCACCTTCTTCGTTCGTGCTTGCACACGCATACGGAGGTGCTTT
CTGGGGTGGAAGGATAGACAACATTCACTTCGTCCTGTTGCTGTTGTGCT
GGTCCTTCCCTCTGATTGTGTGTCCTGCAGCATCATGCAGAGTGGGTCCG
GGATCCAGGAAGACCTGGCCGATAAGTGCATTCGTGCGCCGGGGGCCGCG
GCGCTAGCACTAGCTCTCTGGGAGCCCGTCCCTCGCAGCGGTGTTTGTTC
TCTCCTCAGCCTTAACCTCGCCTTCCAGAGGTATGCCGGCTGCAGCTGTC
GATGGCGCCGCCATTGTCGTGATTGTTGCGGTTAGAGCTGTAGTTGGTCG
GGGTGGGGAGTTGTTGGCAGCCTTGAGTGGCACCCGTGCTGACGTACATA
GTCTTCAAAACATACATCGTGATTGAGCGTTGCAGGGGGATATGCTTTGA
TCGACGGTTCCTGTTTCTACCGCTGCTCAGTTTCTTGTTCCAGAGGCATC
CATGGTTGTTGACAGGTGACGGTTTGGTGCTACTCTACCAACGTCGGGAG
TATCGCCTACGGTTACCTACCCGCCAATGTTTTTTTGGAACAGCAACGCG
AACCCACTTCTATCGCTTGCACTCGAGTTTTGGCGGCGAGGTCGTCGTAT
CCCCTGTTCGTCACGGTCGTAGCAATTGCGGCCTTGCATTACGCGATCAG
CGTCCCCGTGGAGAGGGCCTTAGCAAAGATCTTACTATCCTATGTCTGTG
TCGAACATTGTCAGAGCGAAATACAGTTGTAACATGAAGCCGAGCGTCAT
GCTGGTTTTCTCGAGGTGCCCCCCGGTCGCACAGTCTCCTGCAAAGGCTC
TTTTATCTCGACTGACGGCTTACGGTGTACCGCGTTTTGGTTTCCTGGGC
CTCAGTGACGTCCTCCAGACGTATGTGTCCCGAAGACGGGCTCTTCCTAA
AAGGGTAGACGTGTCTAACGAGTGACCCACAACTGCTTGACTTGACGTCT
GGGTTCGCCTAGCGTCCACCATTTCTACCTACCATACCAGCTGAACTACG
GCACCCCCGACGGGCTTAAGATCCGGACAGGAGTTTCTAGAGAAGAGTAG
CGGGGTGCTTCGCTTCAAGCGTTCAGTGCTACGCCATTGGTCATCGTGCT
TGGTCGTGCCCTTCTTCCCCGAGGGGGTCCGCGCAGTTTTTCCACCTGAC
ACACGGGGGGGTCTACTCCATCTCCGCTCCTCCGTGTCCCATCCAAACTT
GTCGACCTGGCGGCGTATTTTATAAACAAAATTATGAAGAGTCTGGGATG
CAGGAGCGATCGCCTTGGCGGTGACCCTGAAGAGGCCGGGGTGTCATCTG
GAGGTGAGGTGA back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig98:616255..622316+ >mRNA_Ecto-sp6_S_contig98.18806.1 ID=mRNA_Ecto-sp6_S_contig98.18806.1|Name=mRNA_Ecto-sp6_S_contig98.18806.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1095bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:616255..622316+ (Ectocarpus species6 EcLAC_371) ATGACAGTCGGCCCCCCCAGTGACACAAGTGCTCCTAAAGACCCACGCAC GTCAATCACCAGTGCTCCCGAGGACTTCGGCGAACTGGCCCCTTTCGTTT TCGTTGGATGCGACCATGAACGTCGCGTGGGCGACCTACTGGCCCGATAC GATCAAGGGATCGACATCCCTCTTCCTCGCAACCACTCCGATGTGGTCAG GACTCGAGCTGCAAAGTCGGCCGAGGGCAGACGACGCGTAGCGCTGCATT CGTCGGAGGAAGCCACCAGACCCTTCTCCCGCCTCAATCGGGAGAAGACG ACTCACCTCTTGATGGCGAGGGAGCAGAAAAGCCGGCGGGAGGTGGAAAA GGCGAGGAACGCGTCCCTCAGTGATCGAGGCATCGACGACACGTTAGCAC AGGAGATTCGAGGTCTTAATGCGCTGGAGCAAGCTCGGCACCCCCGTCTG CAGGCCGTGCCGTTGTTGTCGAGGTCGGCGTCTAGCGCGGGATCGAAACA GCAGGGACGGAGTCGCCGCGAGATGGCGCGCATCACCGATGCGTTCGGGT TAGTCGAGGATGACGACCACCGGGCGGCCGTGGTCAGCGTGCAGGGCGAA GCACTGGACGATGCCTGGATAGCCCTTCTCGGCAGCACCTTGGAGAACAA CCACAAGATTCACACCTTGTTGCTCAACCGCAATTCCATCGGAGACCAGG GCGTGGCGTTGCTGGCGAGATCCCTTCGCATCAACGACTCGGTCGAAACC CTTTCTTTGGGCGGCAACCGCGTGACGGACGAGGGGGCCCGGAGGCTGGC AGGCTTGTTGAAGAGCGGTCGGTGTTCGCTGAAGGCGCTCAACCTTGCAG GAGCCACCCCGCGCCCCGCCAGCATCATGCAGAGTGGGTCCGGGATCCAG GAAGACCTGGCCGATAAGTGCATTCGTGCGCCGGGGGCCGCGGCGCTAGC ACTAGCTCTCTGGGAGCCCGTCCCTCGCAGCGGTGTTTGTTCTCTCCTCA GCCTTAACCTCGCCTTCCAGAGAGTCTGGGATGCAGGAGCGATCGCCTTG GCGGTGACCCTGAAGAGGCCGGGGTGTCATCTGGAGGTGAGGTGA back to top
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