prot_Ecto-sp6_S_contig98.18806.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig98.18806.1
Unique Nameprot_Ecto-sp6_S_contig98.18806.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length365
Homology
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BLAST of mRNA_Ecto-sp6_S_contig98.18806.1 vs. uniprot
Match: D8LEL3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL3_ECTSI)

HSP 1 Score: 518 bits (1334), Expect = 2.130e-182
Identity = 332/341 (97.36%), Postives = 334/341 (97.95%), Query Frame = 0 
Query:    1 MTVGPPSDTSAPKDPRTSITSAPEDFGELAPFVFVGCDHERRVGDLLARYDQGIDIPLPRNHSDVVRTRAAKSAEGRRRVALHSSEEATRPFSRLNREKTTHLLMAREQKSRREVEKARNASLSDRGIDDTLAQEIRGLNALEQARHPRLQAVPLLSRSASSAGSKQQGRSRREMARITDAFGLVEDDDHRAAVVSVQGEALDDAWIALLGSTLENNHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGLLKSGRCSLKALNLAGATPRPASIMQSGSGIQEDLADKCIRAPGAAALALALWEPVPRSGVCSLLSLNLAFQR 341
            MTV PPS+ SAPKDPRTSITSAPEDFGELAPFVFV CDHERRVGD LARYDQGIDIPLPRNHSDVVRTRAAKSAEGRRRVALHSSEEATRPFSRLNREKTTHLLMAREQ+SRREVEKARNASLSDRGIDDTLAQEIRGLNALEQARHPRLQAVPLLSRSASSAGSKQ GRSRREMARITDAFGLVEDDDHRAAVV VQGEALDDAWIALLGSTLENNH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGLLKSGRCSLKALNLAGATPRPASIMQSGSGIQEDLADKCIRAPGAAALALALWEPVPRSGVCSLLSLNLAFQR
Sbjct:    1 MTVDPPSNPSAPKDPRTSITSAPEDFGELAPFVFVRCDHERRVGDRLARYDQGIDIPLPRNHSDVVRTRAAKSAEGRRRVALHSSEEATRPFSRLNREKTTHLLMAREQRSRREVEKARNASLSDRGIDDTLAQEIRGLNALEQARHPRLQAVPLLSRSASSAGSKQ-GRSRREMARITDAFGLVEDDDHRAAVVRVQGEALDDAWIALLGSTLENNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGLLKSGRCSLKALNLAGATPRPASIMQSGSGIQEDLADKCIRAPGAAALALALWEPVPRSGVCSLLSLNLAFQR 340
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig98.18806.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEL3_ECTSI2.130e-18297.36Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 329..356
e-value: 31.0
score: 6.6
coord: 245..272
e-value: 2.4E-4
score: 30.5
coord: 217..244
e-value: 1.3
score: 16.5
NoneNo IPR availablePANTHERPTHR24113:SF5RAN GTPASE-ACTIVATING PROTEINcoord: 136..355
NoneNo IPR availablePANTHERPTHR24113FAMILY NOT NAMEDcoord: 136..355
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 199..361
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 216..239
e-value: 0.31
score: 11.2
coord: 247..267
e-value: 0.025
score: 14.6
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 191..363
e-value: 2.5E-21
score: 77.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig98contigEcto-sp6_S_contig98:616255..622316 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig98.18806.1mRNA_Ecto-sp6_S_contig98.18806.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig98 616255..622316 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig98.18806.1 ID=prot_Ecto-sp6_S_contig98.18806.1|Name=mRNA_Ecto-sp6_S_contig98.18806.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=365bp
MTVGPPSDTSAPKDPRTSITSAPEDFGELAPFVFVGCDHERRVGDLLARY
DQGIDIPLPRNHSDVVRTRAAKSAEGRRRVALHSSEEATRPFSRLNREKT
THLLMAREQKSRREVEKARNASLSDRGIDDTLAQEIRGLNALEQARHPRL
QAVPLLSRSASSAGSKQQGRSRREMARITDAFGLVEDDDHRAAVVSVQGE
ALDDAWIALLGSTLENNHKIHTLLLNRNSIGDQGVALLARSLRINDSVET
LSLGGNRVTDEGARRLAGLLKSGRCSLKALNLAGATPRPASIMQSGSGIQ
EDLADKCIRAPGAAALALALWEPVPRSGVCSLLSLNLAFQRVWDAGAIAL
AVTLKRPGCHLEVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf