prot_Ecto-sp6_S_contig96.18635.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp6_S_contig96.18635.1
Unique Name	prot_Ecto-sp6_S_contig96.18635.1
Type	polypeptide
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length	250

Homology

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BLAST of mRNA_Ecto-sp6_S_contig96.18635.1 vs. uniprot
Match: D7G5E4_ECTSI (Similar to arginine/serine-rich splicing factor 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E4_ECTSI)

HSP 1 Score: 376 bits (965), Expect = 7.240e-130
Identity = 229/249 (91.97%), Postives = 229/249 (91.97%), Query Frame = 0

Query:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPPGGGYGXXXXGGGGYXXXXXXXXXYGAPRAGGAAPRTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGSGRGRSRSPVRRRSRSPPPRRGSXXXXXXXXXXXXXXXXXXXXXSRSPIRDR 249
            MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPPGG   XXXX     XXXXXXXXXYGAPR GGAAPRTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGSG      P     RSPPPRRGSXXXXXXXXXXXXXXXXXXXXXSRSPIRDR
Sbjct:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPPGGXXXXXXXXXX-XXXXXXXXXXYGAPRVGGAAPRTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGSGXXXXXXPAXXXXRSPPPRRGSXXXXXXXXXXXXXXXXXXXXXSRSPIRDR 248

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BLAST of mRNA_Ecto-sp6_S_contig96.18635.1 vs. uniprot
Match: A0A6H5L109_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L109_9PHAE)

HSP 1 Score: 240 bits (612), Expect = 2.520e-76
Identity = 138/204 (67.65%), Postives = 140/204 (68.63%), Query Frame = 0

Query:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVE------------------------------------------VSHQRGRDRGPPGGGYGXXXXGGGGYXXXXXXXXXYGAPRAGGAAPRTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEG 162
            MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDA DAVRE+DG+SIAGREWRVE                                          VSHQRGRDRGPPGGGYG      GG XXXXXXXXX              YKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEG
Sbjct:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDATDAVREVDGRSIAGREWRVEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSHQRGRDRGPPGGGYG------GGXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEG 198

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BLAST of mRNA_Ecto-sp6_S_contig96.18635.1 vs. uniprot
Match: A0A835Z7K1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7K1_9STRA)

HSP 1 Score: 199 bits (505), Expect = 3.860e-60
Identity = 119/226 (52.65%), Postives = 145/226 (64.16%), Query Frame = 0

Query:    1 MGD--VPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPP-----GGGYGXXXXGGGGYXXXXXXXXXYGAPRAGGAAPRTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGSGRGRSRSPVRRRSRSPPPRRG 219
            MGD    GTKV++GN+     E +LRDEF+++G L +VW+ARNPPGFAFVWF+D RDA DAVR +DG  + G+  RVE+SH R   R        GGGYG    G      XXXXX     PRAGGA  +TG+KVRI+ LP    W+ELKDF+RK GD+ YA+    EGVAEF++RD M RA REL DT F DRRI ++ +D            RR SRSPPPRRG
Sbjct:    1 MGDREESGTKVFIGNVEG-ISEGELRDEFARYGRLTQVWIARNPPGFAFVWFSDIRDAEDAVRGLDGSQLNGKPIRVEISHNRRGRRXXXXXXGRGGGYGDRDRG----YDXXXXXSSRPPPRAGGAPRKTGFKVRISNLPANAHWTELKDFMRKVGDIIYANAENGEGVAEFADRDGMERAYRELHDTTFGDRRIVIEMNDESDR-------YRRDSRSPPPRRG 214

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BLAST of mRNA_Ecto-sp6_S_contig96.18635.1 vs. uniprot
Match: A0A5D6YQ52_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YQ52_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.870e-42
Identity = 98/212 (46.23%), Postives = 128/212 (60.38%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPPGGGYGXXXXGGGGYXXXXXXXXXYGAPRAGGAAP--RTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGSGRGRSRSPVRRRSRSP 214
            GT+V+VG L      R+++D FS++G ++ +WVARNPPGFAFV F D RDA DA+R +DG+   G   RVE++  RG  R   GG       G  G XXXXXXX   G  R  G  P  RT ++VRIT LP G  W  +KDF+R  G+VTY D+  D   VAEF +++DM  A+++LDDT F    +R+  + GG G   S     RRSRSP
Sbjct:    2 GTRVYVGGLPRDATSREIQDGFSRYGHVSNIWVARNPPGFAFVDFEDPRDAEDAIRALDGRDFLGGRIRVEIA--RGGSRRDDGG---RGRGGDFGXXXXXXXXRDRGFDRGAGRNPPQRTDFRVRITDLPRGTDWRNIKDFLRTGGEVTYCDIENDGTAVAEFQSKEDMDNAIKKLDDTEFRGNYVRLIPESGGGGNDSSS----RRSRSP 204

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BLAST of mRNA_Ecto-sp6_S_contig96.18635.1 vs. uniprot
Match: A0A484E7I0_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7I0_BRELC)

HSP 1 Score: 147 bits (372), Expect = 2.940e-39
Identity = 88/207 (42.51%), Postives = 120/207 (57.97%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPPGGGYGXXXXGGGGYXXXXXXXXXYGAPRAGGAAPRTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGSGRGRSRSPVRRRS 211
            GT+V+VG L      R+++D F+++G ++ +WVARNPPGFAFV F D RDA DA+R +DG+   G   RVE++  RG  R   GG  G     G G             P+      RT ++VR+T LP  + W  +KDF+R  G+VTY ++  D   +AEF  +DDM  AV++LDDT F    +RV   +G S R RSRSP R RS
Sbjct:   90 GTRVYVGGLPRDATSREIQDGFNRYGHVSNIWVARNPPGFAFVDFEDPRDADDAIRSMDGREFLGGRIRVELA--RGGSRRDGGGRRGDDERFGRGGSGGDRVERGRNPPQ------RTDFRVRVTDLPRDVDWRNVKDFLRTGGEVTYCNIEADGSAIAEFQTKDDMEDAVKKLDDTEFRGSYVRV-APEGDSSR-RSRSPARGRS 286

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BLAST of mRNA_Ecto-sp6_S_contig96.18635.1 vs. uniprot
Match: A0A6G0XSF8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XSF8_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.220e-38
Identity = 78/204 (38.24%), Postives = 117/204 (57.35%), Query Frame = 0

Query:    8 KVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPPGGGYGXXXXGGGGYXXXXXXXXXYGAPRAGGAAPRTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGSGRGRSRSPVRRRS 211
            +V+VG +  +   R++ + F +FG++  VW+ARNPPGFAFV F D RDA DA++++DGK + G   RV+++              G    GG G              R+      +G+KVRITGLP    W ++KDFVRKAGDV++ D+ GD+ + E +++ D+   +R+LDDT F  RR+ +      + R RS+SP RR S
Sbjct:    5 RVYVGGIPKSAGNREIEEAFQRFGKIVNVWIARNPPGFAFVDFEDPRDADDAIKDMDGKELLGERIRVQMAR-------------GGVRRGGRGDRDRSYRDGSSDRHRS------SGHKVRITGLPRNADWRDVKDFVRKAGDVSFCDMDGDDAIVELASKFDLENVIRKLDDTEFDGRRVSIK-----AVRDRSQSPRRRAS 184

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BLAST of mRNA_Ecto-sp6_S_contig96.18635.1 vs. uniprot
Match: G4YPP5_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YPP5_PHYSP)

HSP 1 Score: 140 bits (354), Expect = 2.620e-38
Identity = 77/180 (42.78%), Postives = 107/180 (59.44%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPPGGGYGXXXXGGGGYXXXXXXXXXYGAPRAGGAAPRTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYF 184
            GT+V+VG L      R+++D F+++G ++ +WVARNPPGFAFV F D RDA DA+R +DG+   G   RVE++  RG  R   GG   XX  GG G             P+      RT Y+VR+T LP  + W  +KDF+R  G+VTY ++  D   +AEF  +DDM  A+++LDDT F
Sbjct:    2 GTRVYVGGLPRDATSREIQDGFNRYGHVSNIWVARNPPGFAFVDFEDPRDADDAIRSMDGRDFLGGRIRVELA--RGGSRRDGGGRXXXXDRGGYGGRGGDRFDRGRNPPQ------RTDYRVRVTDLPRDVDWRNVKDFLRTGGEVTYCNIEADGSAIAEFQTKDDMEDAIKKLDDTEF 173

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BLAST of mRNA_Ecto-sp6_S_contig96.18635.1 vs. uniprot
Match: A0A8K1CTI4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTI4_PYTOL)

HSP 1 Score: 137 bits (346), Expect = 2.190e-36
Identity = 94/215 (43.72%), Postives = 125/215 (58.14%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGR-DRGPPGGGYGXXXXGGGGYXXXXXXXXXYGAPR--AGGAAP--RTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGSGRGRSRSPVRRRSRSP 214
            GT+V++G L      R+++D FS++G +  +W+ARNPPGFAFV F D RDA DA+R +DG+   G   RVE++    R DR                 XXXXXXXXX G  R   GG  P  RT ++VRIT LP G+ W ++KD +R AG+VT+ +V  D   +AEF +RDD+  A+ +LDD  F    IR+      S   RSRS   RR RSP
Sbjct:    2 GTRVYIGGLPRDATSREVQDGFSRYGHIANIWIARNPPGFAFVDFEDPRDADDAIRSMDGRDFLGGRIRVELAKGGSRRDR----------------XXXXXXXXXXRGGDRFERGGRNPPQRTEFRVRITDLPRGVDWRDVKDHLRTAGEVTFCNVENDGTAIAEFQSRDDVQNAIEKLDDKEFRGSYIRIT---AASSEERSRSRSPRRDRSP 197

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BLAST of mRNA_Ecto-sp6_S_contig96.18635.1 vs. uniprot
Match: A0A183UTP1_TOXCA (Uncharacterized protein n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A183UTP1_TOXCA)

HSP 1 Score: 137 bits (346), Expect = 2.640e-36
Identity = 98/228 (42.98%), Postives = 126/228 (55.26%), Query Frame = 0

Query:    7 TKVWVGNLGSTCEERDLRDEFSKFGELNKVWVA-RNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPPGG--------GYGXXXXGGGGYXXXXXXXXXYGAPRAGGAAPRTGYKVRITGLP-EGMR-WSELKDFVRKAGDVTYADV-RGDEGVAEFSNRDDMSRAVRELDDTYFADRR-----IRVDYDDGGS--GRGRSRSPVRRRSRSPP 215
            ++++VGNL +T   +D+ D F+KFG++  V +  + PP FAFV F D RDA DAVR  DG    G  +R+ V   RG     PGG        G+G      G Y          G+ R GG   RT Y+V +TGLP  G R W +LKD +R+AGDV YAD+ R   GV E++  DDM  A+R+LDDT F         IRV  DDGG   GR RSRSP+ R +R  P
Sbjct:    5 SRIYVGNLPTTVRAKDVEDIFAKFGKIIFVDLKDKRPPYFAFVEFDDPRDAEDAVRSRDGYDFYG--YRLRVEFPRGVGPRGPGGRPLYGNDRGHGSSRRDSGSYGG--------GSSRGGGTGRRTNYRVIVTGLPVSGARSWQDLKDHMREAGDVCYADILRDGTGVVEYARLDDMKYAIRKLDDTKFKSHEGETSYIRVREDDGGDRGGRSRSRSPMARTTRGSP 222

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BLAST of mRNA_Ecto-sp6_S_contig96.18635.1 vs. uniprot
Match: A0A2D4BLB0_PYTIN (Serine/arginine-rich splicing factor 1-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BLB0_PYTIN)

HSP 1 Score: 137 bits (344), Expect = 4.010e-36
Identity = 81/190 (42.63%), Postives = 112/190 (58.95%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRG---RDRGPPGGGYGXXXXGGGGYXXXXXXXXXYGAPRAGGAAPRTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYFADRRIRV 191
            GT+V+VG L     +R+++D F ++G ++ VW+ARNPPGFAFV F D RDA DA+R +DG+   G   R+ V   RG   RDRG  G                XXXXXX    R      RT ++VRIT LP G+ W ++KD +R AG+VT+ +V GD   +AEF  ++DM  A+++LDD  F    IR+
Sbjct:    2 GTRVYVGGLPRDATQREIQDGFGRYGHISNVWIARNPPGFAFVDFEDPRDADDAIRSMDGRDFLG--GRIRVEQARGGTRRDRGDRG--------------DFXXXXXXXRNERGRNPPQRTDFRVRITDLPRGVDWRDVKDHLRTAGEVTFCNVEGDGTAIAEFQTQEDMDNAIQKLDDKDFRGSYIRI 175

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig96.18635.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig96.18635.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G5E4_ECTSI	7.240e-130	91.97	Similar to arginine/serine-rich splicing factor 7 ...	[more]
A0A6H5L109_9PHAE	2.520e-76	67.65	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A835Z7K1_9STRA	3.860e-60	52.65	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A5D6YQ52_9STRA	1.870e-42	46.23	Uncharacterized protein n=1 Tax=Pythium brassicum ...	[more]
A0A484E7I0_BRELC	2.940e-39	42.51	Uncharacterized protein n=1 Tax=Bremia lactucae Ta...	[more]
A0A6G0XSF8_9STRA	1.220e-38	38.24	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]
G4YPP5_PHYSP	2.620e-38	42.78	Uncharacterized protein (Fragment) n=1 Tax=Phytoph...	[more]
A0A8K1CTI4_PYTOL	2.190e-36	43.72	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A183UTP1_TOXCA	2.640e-36	42.98	Uncharacterized protein n=1 Tax=Toxocara canis Tax...	[more]
A0A2D4BLB0_PYTIN	4.010e-36	42.63	Serine/arginine-rich splicing factor 1-like protei...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 127..192 e-value: 5.0E-11 score: 52.6 coord: 8..76 e-value: 5.0E-19 score: 79.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 128..190 e-value: 1.3E-8 score: 34.5 coord: 9..74 e-value: 4.1E-16 score: 58.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..80 score: 16.483
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 126..196 score: 11.247
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 125..194 e-value: 1.7E-16 score: 61.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..114 e-value: 2.3E-23 score: 84.7
None	No IPR available	PANTHER	PTHR23003:SF27	NUCLEOLAR PROTEIN 3	coord: 7..241
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 7..241
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 5..194

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig96	contig	Ecto-sp6_S_contig96:349480..353269 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig96.18635.1	mRNA_Ecto-sp6_S_contig96.18635.1	Ectocarpus species6 EcLAC_371	mRNA	Ecto-sp6_S_contig96 349480..353269 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp6_S_contig96.18635.1 ID=prot_Ecto-sp6_S_contig96.18635.1|Name=mRNA_Ecto-sp6_S_contig96.18635.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=250bp
MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWF
ADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPPGGGYGGGGGGGG
GYGGGGGGGGGYGAPRAGGAAPRTGYKVRITGLPEGMRWSELKDFVRKAG
DVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGSGR
GRSRSPVRRRSRSPPPRRGSPPRGRSRSPPGRGRSPYGRSRSRSPIRDR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf