mRNA_Ecto-sp6_S_contig96.18635.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig96.18635.1
Unique NamemRNA_Ecto-sp6_S_contig96.18635.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig96.18635.1 vs. uniprot
Match: D7G5E4_ECTSI (Similar to arginine/serine-rich splicing factor 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E4_ECTSI)

HSP 1 Score: 376 bits (965), Expect = 7.240e-130
Identity = 229/249 (91.97%), Postives = 229/249 (91.97%), Query Frame = 1 
Query:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPPGGGYGXXXXGGGGYXXXXXXXXXYGAPRAGGAAPRTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGSGRGRSRSPVRRRSRSPPPRRGSXXXXXXXXXXXXXXXXXXXXXSRSPIRDR 747
            MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPPGG   XXXX     XXXXXXXXXYGAPR GGAAPRTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGSG      P     RSPPPRRGSXXXXXXXXXXXXXXXXXXXXXSRSPIRDR
Sbjct:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPPGGXXXXXXXXXX-XXXXXXXXXXYGAPRVGGAAPRTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGSGXXXXXXPAXXXXRSPPPRRGSXXXXXXXXXXXXXXXXXXXXXSRSPIRDR 248
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BLAST of mRNA_Ecto-sp6_S_contig96.18635.1 vs. uniprot
Match: A0A6H5L109_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L109_9PHAE)

HSP 1 Score: 240 bits (612), Expect = 2.520e-76
Identity = 138/204 (67.65%), Postives = 140/204 (68.63%), Query Frame = 1 
Query:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVE------------------------------------------VSHQRGRDRGPPGGGYGXXXXGGGGYXXXXXXXXXYGAPRAGGAAPRTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEG 486
            MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDA DAVRE+DG+SIAGREWRVE                                          VSHQRGRDRGPPGGGYG      GG XXXXXXXXX              YKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEG
Sbjct:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDATDAVREVDGRSIAGREWRVEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSHQRGRDRGPPGGGYG------GGXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEG 198
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BLAST of mRNA_Ecto-sp6_S_contig96.18635.1 vs. uniprot
Match: A0A835Z7K1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7K1_9STRA)

HSP 1 Score: 199 bits (505), Expect = 3.860e-60
Identity = 119/226 (52.65%), Postives = 145/226 (64.16%), Query Frame = 1 
Query:    1 MGD--VPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPP-----GGGYGXXXXGGGGYXXXXXXXXXYGAPRAGGAAPRTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGSGRGRSRSPVRRRSRSPPPRRG 657
            MGD    GTKV++GN+     E +LRDEF+++G L +VW+ARNPPGFAFVWF+D RDA DAVR +DG  + G+  RVE+SH R   R        GGGYG    G      XXXXX     PRAGGA  +TG+KVRI+ LP    W+ELKDF+RK GD+ YA+    EGVAEF++RD M RA REL DT F DRRI ++ +D            RR SRSPPPRRG
Sbjct:    1 MGDREESGTKVFIGNVEG-ISEGELRDEFARYGRLTQVWIARNPPGFAFVWFSDIRDAEDAVRGLDGSQLNGKPIRVEISHNRRGRRXXXXXXGRGGGYGDRDRG----YDXXXXXSSRPPPRAGGAPRKTGFKVRISNLPANAHWTELKDFMRKVGDIIYANAENGEGVAEFADRDGMERAYRELHDTTFGDRRIVIEMNDESDR-------YRRDSRSPPPRRG 214
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BLAST of mRNA_Ecto-sp6_S_contig96.18635.1 vs. uniprot
Match: A0A5D6YQ52_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YQ52_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.870e-42
Identity = 98/212 (46.23%), Postives = 128/212 (60.38%), Query Frame = 1 
Query:   16 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPPGGGYGXXXXGGGGYXXXXXXXXXYGAPRAGGAAP--RTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGSGRGRSRSPVRRRSRSP 642
            GT+V+VG L      R+++D FS++G ++ +WVARNPPGFAFV F D RDA DA+R +DG+   G   RVE++  RG  R   GG       G  G XXXXXXX   G  R  G  P  RT ++VRIT LP G  W  +KDF+R  G+VTY D+  D   VAEF +++DM  A+++LDDT F    +R+  + GG G   S     RRSRSP
Sbjct:    2 GTRVYVGGLPRDATSREIQDGFSRYGHVSNIWVARNPPGFAFVDFEDPRDAEDAIRALDGRDFLGGRIRVEIA--RGGSRRDDGG---RGRGGDFGXXXXXXXXRDRGFDRGAGRNPPQRTDFRVRITDLPRGTDWRNIKDFLRTGGEVTYCDIENDGTAVAEFQSKEDMDNAIKKLDDTEFRGNYVRLIPESGGGGNDSSS----RRSRSP 204
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BLAST of mRNA_Ecto-sp6_S_contig96.18635.1 vs. uniprot
Match: A0A484E7I0_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7I0_BRELC)

HSP 1 Score: 147 bits (372), Expect = 2.940e-39
Identity = 88/207 (42.51%), Postives = 120/207 (57.97%), Query Frame = 1 
Query:   16 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPPGGGYGXXXXGGGGYXXXXXXXXXYGAPRAGGAAPRTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGSGRGRSRSPVRRRS 633
            GT+V+VG L      R+++D F+++G ++ +WVARNPPGFAFV F D RDA DA+R +DG+   G   RVE++  RG  R   GG  G     G G             P+      RT ++VR+T LP  + W  +KDF+R  G+VTY ++  D   +AEF  +DDM  AV++LDDT F    +RV   +G S R RSRSP R RS
Sbjct:   90 GTRVYVGGLPRDATSREIQDGFNRYGHVSNIWVARNPPGFAFVDFEDPRDADDAIRSMDGREFLGGRIRVELA--RGGSRRDGGGRRGDDERFGRGGSGGDRVERGRNPPQ------RTDFRVRVTDLPRDVDWRNVKDFLRTGGEVTYCNIEADGSAIAEFQTKDDMEDAVKKLDDTEFRGSYVRV-APEGDSSR-RSRSPARGRS 286
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BLAST of mRNA_Ecto-sp6_S_contig96.18635.1 vs. uniprot
Match: A0A6G0XSF8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XSF8_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.220e-38
Identity = 78/204 (38.24%), Postives = 117/204 (57.35%), Query Frame = 1 
Query:   22 KVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPPGGGYGXXXXGGGGYXXXXXXXXXYGAPRAGGAAPRTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGSGRGRSRSPVRRRS 633
            +V+VG +  +   R++ + F +FG++  VW+ARNPPGFAFV F D RDA DA++++DGK + G   RV+++              G    GG G              R+      +G+KVRITGLP    W ++KDFVRKAGDV++ D+ GD+ + E +++ D+   +R+LDDT F  RR+ +      + R RS+SP RR S
Sbjct:    5 RVYVGGIPKSAGNREIEEAFQRFGKIVNVWIARNPPGFAFVDFEDPRDADDAIKDMDGKELLGERIRVQMAR-------------GGVRRGGRGDRDRSYRDGSSDRHRS------SGHKVRITGLPRNADWRDVKDFVRKAGDVSFCDMDGDDAIVELASKFDLENVIRKLDDTEFDGRRVSIK-----AVRDRSQSPRRRAS 184
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BLAST of mRNA_Ecto-sp6_S_contig96.18635.1 vs. uniprot
Match: G4YPP5_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YPP5_PHYSP)

HSP 1 Score: 140 bits (354), Expect = 2.620e-38
Identity = 77/180 (42.78%), Postives = 107/180 (59.44%), Query Frame = 1 
Query:   16 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPPGGGYGXXXXGGGGYXXXXXXXXXYGAPRAGGAAPRTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYF 552
            GT+V+VG L      R+++D F+++G ++ +WVARNPPGFAFV F D RDA DA+R +DG+   G   RVE++  RG  R   GG   XX  GG G             P+      RT Y+VR+T LP  + W  +KDF+R  G+VTY ++  D   +AEF  +DDM  A+++LDDT F
Sbjct:    2 GTRVYVGGLPRDATSREIQDGFNRYGHVSNIWVARNPPGFAFVDFEDPRDADDAIRSMDGRDFLGGRIRVELA--RGGSRRDGGGRXXXXDRGGYGGRGGDRFDRGRNPPQ------RTDYRVRVTDLPRDVDWRNVKDFLRTGGEVTYCNIEADGSAIAEFQTKDDMEDAIKKLDDTEF 173
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BLAST of mRNA_Ecto-sp6_S_contig96.18635.1 vs. uniprot
Match: A0A8K1CTI4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTI4_PYTOL)

HSP 1 Score: 137 bits (346), Expect = 2.190e-36
Identity = 94/215 (43.72%), Postives = 125/215 (58.14%), Query Frame = 1 
Query:   16 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGR-DRGPPGGGYGXXXXGGGGYXXXXXXXXXYGAPR--AGGAAP--RTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGSGRGRSRSPVRRRSRSP 642
            GT+V++G L      R+++D FS++G +  +W+ARNPPGFAFV F D RDA DA+R +DG+   G   RVE++    R DR                 XXXXXXXXX G  R   GG  P  RT ++VRIT LP G+ W ++KD +R AG+VT+ +V  D   +AEF +RDD+  A+ +LDD  F    IR+      S   RSRS   RR RSP
Sbjct:    2 GTRVYIGGLPRDATSREVQDGFSRYGHIANIWIARNPPGFAFVDFEDPRDADDAIRSMDGRDFLGGRIRVELAKGGSRRDR----------------XXXXXXXXXXRGGDRFERGGRNPPQRTEFRVRITDLPRGVDWRDVKDHLRTAGEVTFCNVENDGTAIAEFQSRDDVQNAIEKLDDKEFRGSYIRIT---AASSEERSRSRSPRRDRSP 197
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BLAST of mRNA_Ecto-sp6_S_contig96.18635.1 vs. uniprot
Match: A0A183UTP1_TOXCA (Uncharacterized protein n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A183UTP1_TOXCA)

HSP 1 Score: 137 bits (346), Expect = 2.640e-36
Identity = 98/228 (42.98%), Postives = 126/228 (55.26%), Query Frame = 1 
Query:   19 TKVWVGNLGSTCEERDLRDEFSKFGELNKVWVA-RNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPPGG--------GYGXXXXGGGGYXXXXXXXXXYGAPRAGGAAPRTGYKVRITGLP-EGMR-WSELKDFVRKAGDVTYADV-RGDEGVAEFSNRDDMSRAVRELDDTYFADRR-----IRVDYDDGGS--GRGRSRSPVRRRSRSPP 645
            ++++VGNL +T   +D+ D F+KFG++  V +  + PP FAFV F D RDA DAVR  DG    G  +R+ V   RG     PGG        G+G      G Y          G+ R GG   RT Y+V +TGLP  G R W +LKD +R+AGDV YAD+ R   GV E++  DDM  A+R+LDDT F         IRV  DDGG   GR RSRSP+ R +R  P
Sbjct:    5 SRIYVGNLPTTVRAKDVEDIFAKFGKIIFVDLKDKRPPYFAFVEFDDPRDAEDAVRSRDGYDFYG--YRLRVEFPRGVGPRGPGGRPLYGNDRGHGSSRRDSGSYGG--------GSSRGGGTGRRTNYRVIVTGLPVSGARSWQDLKDHMREAGDVCYADILRDGTGVVEYARLDDMKYAIRKLDDTKFKSHEGETSYIRVREDDGGDRGGRSRSRSPMARTTRGSP 222
[Close]
BLAST of mRNA_Ecto-sp6_S_contig96.18635.1 vs. uniprot
Match: A0A2D4BLB0_PYTIN (Serine/arginine-rich splicing factor 1-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BLB0_PYTIN)

HSP 1 Score: 137 bits (344), Expect = 4.010e-36
Identity = 81/190 (42.63%), Postives = 112/190 (58.95%), Query Frame = 1 
Query:   16 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRG---RDRGPPGGGYGXXXXGGGGYXXXXXXXXXYGAPRAGGAAPRTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYFADRRIRV 573
            GT+V+VG L     +R+++D F ++G ++ VW+ARNPPGFAFV F D RDA DA+R +DG+   G   R+ V   RG   RDRG  G                XXXXXX    R      RT ++VRIT LP G+ W ++KD +R AG+VT+ +V GD   +AEF  ++DM  A+++LDD  F    IR+
Sbjct:    2 GTRVYVGGLPRDATQREIQDGFGRYGHISNVWIARNPPGFAFVDFEDPRDADDAIRSMDGRDFLG--GRIRVEQARGGTRRDRGDRG--------------DFXXXXXXXRNERGRNPPQRTDFRVRITDLPRGVDWRDVKDHLRTAGEVTFCNVEGDGTAIAEFQTQEDMDNAIQKLDDKDFRGSYIRI 175
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5E4_ECTSI7.240e-13091.97Similar to arginine/serine-rich splicing factor 7 ... [more]
A0A6H5L109_9PHAE2.520e-7667.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z7K1_9STRA3.860e-6052.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5D6YQ52_9STRA1.870e-4246.23Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A484E7I0_BRELC2.940e-3942.51Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A6G0XSF8_9STRA1.220e-3838.24Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
G4YPP5_PHYSP2.620e-3842.78Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A8K1CTI4_PYTOL2.190e-3643.72Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A183UTP1_TOXCA2.640e-3642.98Uncharacterized protein n=1 Tax=Toxocara canis Tax... [more]
A0A2D4BLB0_PYTIN4.010e-3642.63Serine/arginine-rich splicing factor 1-like protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:349480..353269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score376.3
Seed ortholog evalue1.1e-101
Seed eggNOG ortholog2880.D7G5E4
Preferred nameNPL3
Model size750
KEGG koko:K12893,ko:K12896,ko:K14651
KEGG Pathwayko03022,ko03040,ko05168,ko05202,map03022,map03040,map05168,map05202
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000375,GO:0000377,GO:0000398,GO:0000993,GO:0001067,GO:0001069,GO:0001098,GO:0001099,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006412,GO:0006415,GO:0006417,GO:0006518,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008143,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0017148,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022411,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031369,GO:0031370,GO:0031503,GO:0031554,GO:0032268,GO:0032269,GO:0032784,GO:0032786,GO:0032968,GO:0032984,GO:0032991,GO:0033036,GO:0034243,GO:0034248,GO:0034249,GO:0034613,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0042886,GO:0043043,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043242,GO:0043244,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045184,GO:0045292,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051128,GO:0051129,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051641,GO:0051649,GO:0060255,GO:0060567,GO:0065007,GO:0070063,GO:0070717,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1904594,GO:1990904,GO:2000112,GO:2000113,GO:2000804,GO:2000805,GO:2001141
Exons5
EggNOG free text desc.RNA splicing
EggNOG OGsCOG0724@1,KOG0106@2759
Ec32 ortholog descriptionSR RNA splicing protein
Ec32 orthologEc-06_010740.1
Cds size750
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350589.9529963-CDS-Ecto-sp6_S_contig96:349479..3496501682350589.9529963-CDS-Ecto-sp6_S_contig96:349479..349650Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 349480..349650 -
1682350589.963063-CDS-Ecto-sp6_S_contig96:349973..3500671682350589.963063-CDS-Ecto-sp6_S_contig96:349973..350067Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 349974..350067 -
1682350589.9707904-CDS-Ecto-sp6_S_contig96:351627..3518811682350589.9707904-CDS-Ecto-sp6_S_contig96:351627..351881Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 351628..351881 -
1682350589.9783537-CDS-Ecto-sp6_S_contig96:352068..3521941682350589.9783537-CDS-Ecto-sp6_S_contig96:352068..352194Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 352069..352194 -
1682350589.9858234-CDS-Ecto-sp6_S_contig96:353164..3532691682350589.9858234-CDS-Ecto-sp6_S_contig96:353164..353269Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 353165..353269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18635.1prot_Ecto-sp6_S_contig96.18635.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig96 349480..353269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig96.18635.1

>prot_Ecto-sp6_S_contig96.18635.1 ID=prot_Ecto-sp6_S_contig96.18635.1|Name=mRNA_Ecto-sp6_S_contig96.18635.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=250bp
MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWF
ADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPPGGGYGGGGGGGG
GYGGGGGGGGGYGAPRAGGAAPRTGYKVRITGLPEGMRWSELKDFVRKAG
DVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGSGR
GRSRSPVRRRSRSPPPRRGSPPRGRSRSPPGRGRSPYGRSRSRSPIRDR*
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mRNA from alignment at Ecto-sp6_S_contig96:349480..353269-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig96.18635.1 ID=mRNA_Ecto-sp6_S_contig96.18635.1|Name=mRNA_Ecto-sp6_S_contig96.18635.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3790bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:349480..353269- (Ectocarpus species6 EcLAC_371)
ATGGGAGATGTGCCCGGAACAAAGGTTTGGGTAGGTAACCTCGGCAGCAC
GTGCGAGGAGCGTGATCTGAGGGACGAGTTCAGCAAGTTCGGAGAACTCA
ACAAGGTGATTGATTTTGGTTTTTGGTCCTCGGCCACACGCCACAAAACT
CCCGCATTCAGGTAGGAGGGAGATAGCCGAGACGTGAATGAATTTGGCAA
CCGGCAAGCTTGCTGCACAGAGTCCGCGGAGGAAGATCTGCGTGCGCGTG
GAGGGATTGTGGTCCTTACGAGCGTCTTTGGTGTTGGATTTCTCTTGTCA
GGACGGGTGGCTCATCTTGCGCCTAGCCTACAAGAGGTCCTCTTTCCCCC
CCCGATCTTGGCAGGAAATAACCCGAACTATGTAAGTCCCTCGCAGCACG
CATCCCTTCGAATTGTGGTGTGTAAGAGCAGCGCTAGCGTTCCCCAACTC
ATTGTTTCTGCCCTGCCCCCTCTTGTGGCCTCGTCTCCTGTCTCATCGAT
TTTGGCGCCCTTGGTCGCAATTTCGTCAGCTGTCTTTTTTCTTATTTTTC
CCGGGTTTTTCGACCGCTATGAAAAAAAAGCCAGCCGACCTCTGCGTTTA
ACCCTTGGTTGCACAGTATGTTCCCCTTCTCCGCTGTCGGCCCTGCCGGG
TGTCGAGATGTATAGTAGTAGGTGTGCTACAAAGGTGATATTTAATGAAT
CTTGTCCGCTTGCGCAGGTGTGGGTTGCGCGTAACCCTCCGGGCTTTGCT
TTCGTTTGGTTTGCCGACGACCGAGATGCTACTGACGCCGTTCGTGAGAT
CGACGGGAGAAGCATCGCCGGGCGGGAGTGGCGCGTTGAGATCGTAAGTA
GAGAACAACCTCCTGCCTCAATTCAACCATGCGAAAAACGAACCTCAAGA
CCCCATGCCTGTTGTCCTCGGTGTTCGTTTGTCCTGGTGGTGGCTGTTTT
GCCTTTGTTATGGGCGGCACGCCACCACCGCTGCCGTTGTTGTCTCTCGT
TCTCTTCGCGTTTGTCGTTGTGGCGTGCGTGTTTTTTGCACTCCGAACTA
CTTCTATAATACACGCCAAATATAGGTGTGGGTCGCCCGCAACCCACCGG
GCTTCGCGTTCGTCTGGTTCGCTGACGACAGAGACGCCGGTGATGCCGTT
AGGGAGATCGACGGCAAGAGCATCGCCGGTCGCGAGTGGCGTGTGGAAGT
CGTGAGTTGTCTTCCTCCCCTCTTGCTGCATTTTGATTGGATCCAAACTT
CTACTGCTTTTCCACATGCGATCCCCCCTTCCCCCCCGGTCTTCGGAATG
TGTGTCTTGAACGTGCTGTTTTTGACGGGGTGGATGTTGCTGCTGTTTTT
CCTTCTTCCACCTCTGCTACGGTGTGTACGGTCGACAGTCTCACCAAAGA
GGCCGCGACCGCGGGCCGCCCGGGGGCGGATACGGCGGTGGCGGTGGCGG
CGGCGGTGGTTACGGGGGCGGAGGCGGAGGCGGAGGCGGGTACGGCGCTC
CCCGCGCCGGCGGCGCCGCGCCCCGCACCGGCTACAAGGTCCGCATCACC
GGCCTACCTGAGGGCATGCGCTGGTCCGAGCTGAAGGACTTCGTGCGCAA
GGCGGGGGACGTGACTTACGCCGACGTCCGGGGCGACGAAGGGTACGTCC
GACCGTCGTGTTTTCATTGTCTTTCAGACTATCTCGAGTGTTGTTGTAAC
CCGTGTGCGTTCTCTGTCGAAAGTGGGTCTCGATCAACTGTCCATTGCGT
GAAGGTGGTCGACGGCTGCGCGCGCTTTAGAAAAGCACCGCCGACGAGGT
CCGTCCGGCTAAGCTGAGAAAACTTTCGGTTTCTTTTTTCGTGTGGTGGT
GTGATCACACGAACTTCCGTGCCCGCCCATGCCTAACCTAACCATCCCTT
TTTGCGATGTCGACGCGGACGACGGGGCGCAACGCGATGGAGTGGGAAGG
GGGGGGGGGTGCTTTTTCCACAGTATAGCTGTCTCTACAAAGAAACCAGC
CGGCAGGGCTGCACGCCAAAATTATATTCGACCGCTCCAAACTACGCTAC
CATCCCTTTGCGGCCTTGTTCTGTCGAGAAGCGCGGCAATGGCACATTTG
GTGCTTTTCTACCTGGGCGTGTTGTTGTAGTGGTTGTACGCGTGCCACCA
CCGGCATGTTCTTCCCGACGGTCGTGCGGACGTCTAGTAGTTGTAGGGGC
TCACTGCAACCAACGTTACGGTGGCGCGCGCGGGATAAAGCGGGGTTGAG
GATCTACAGCAATCTTCCCAACGTTCCTTCCGCAAAGACGATTTTGTTCA
TGGTGGGAGATGGGCTGGTCCTGGTGCAAATCAGAGTTTCACTCTCTCCG
AGGGGGGGGTCAACCACCACCTAGGTTCTACAGCTTTTTCGACTTTCGAC
CAACCGCTGCCGCCCTTTCGAGCATCCGAGAGACAAGAGAAAGAGGGGGG
GGGGTTCTTGCATCCAGCCGCCACCGTGGCTACGTCACGTCGCGTCGCTT
CACTTGTACAGCTCCGCTACCGTGCATCTCGTCTACTCTCTACACTACTG
CGCTACGTCAACTTTCGGCGACCTCGCCTCCACCAACAACCCCAACATGA
TGACTGCCACGCGACAACACGCACGTCGCCATGACCCCAACGACAAGAAC
AACAAGTGCTTTCTGCTGGTTCCCCTTCTGGCTTTCAACCACCACCGCAG
CTTGGCTGCCAACAGCAACAACTCGCTCCTCGCCGCAGTATGCCATGGAC
ATATCGGTACCGTGCTTTTTGCACAACACCCTGCTTAGTATTATAGATGA
TGCGTGAAGTAGTCGGGTCTTGACACCAATAATTTGTTTTCTTGAGTGTC
GAGAATCCGCGGTATGGTTGGACTCACGCTGTAGGCGATTGATTATTCGT
AGAGTACGTATCCATAGCCCCTCCGTGAAACCTCTATGGTGGTGCTGCTC
TGTTTTCCGGTGAGTGCCTGGTACTGTTGTTGTTGAGAGGCCGCTGTGGG
GGTGGGTTCACCTTCAGCGTTTTCGGTTTCTCACGTGTCTGTGCGCGCCT
CTTCCTTCTTCCGTCTTCCCGCCTGCCTGGGTCCGGCGATCCCGTGTCTT
GTCCTTCCGTTCCCCGTTTGCTGCTTTGTTGTCGTGGTGTGTTGTGTGTG
TTTCGTGTGTGTCTTTTTTTCTGTGTGCCGTGGTGGGTTCGGCGACCCGC
AGTGTCGCTGAGTTTTCCAACCGCGACGACATGTCGAGGGCCGTGAGGGA
GCTGGACGACACCTACTTCGCGGACAGGCGCATCCGCGTGGACTACGTGA
GTGCTCTCGTGTACAGTGTAGCTCGTGTTGTGTGTCGTCGTCTTGTACTG
GCGCTCGCCTAGGTGATGCACGTATCCACATCCCGTGGAGTGTGTTCCAC
ATACATATGCATCACGTGTTAACATGAATGGCACTTCGTTCTTCACCATC
AACCATGAAGTGTTGATATGTGCCCTGATCCGGCCTGTGCAAGAGGGAAA
CCCGGTTTTTAGCACCGAGCACGGCGTGCCAATTGCCATTCCTGTCATCA
CCGCACGCCACCAGTGTCAACACCCACCCGTCCGATCATGACCCTTTTGT
TGTTTGTTTCTTCTCCCAGGACGATGGAGGCAGCGGCCGCGGCCGTTCCC
GTTCTCCCGTTAGGCGCCGCTCCCGCAGCCCTCCCCCCCGCCGCGGAAGC
CCCCCCCGCGGCAGGTCTCGCTCCCCTCCCGGCCGCGGCAGGAGCCCCTA
CGGCCGCAGCCGCAGCCGCAGCCCCATTCGCGACAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:349480..353269-

>mRNA_Ecto-sp6_S_contig96.18635.1 ID=mRNA_Ecto-sp6_S_contig96.18635.1|Name=mRNA_Ecto-sp6_S_contig96.18635.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=750bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:349480..353269- (Ectocarpus species6 EcLAC_371)
ATGGGAGATGTGCCCGGAACAAAGGTTTGGGTAGGTAACCTCGGCAGCAC
GTGCGAGGAGCGTGATCTGAGGGACGAGTTCAGCAAGTTCGGAGAACTCA
ACAAGGTGTGGGTCGCCCGCAACCCACCGGGCTTCGCGTTCGTCTGGTTC
GCTGACGACAGAGACGCCGGTGATGCCGTTAGGGAGATCGACGGCAAGAG
CATCGCCGGTCGCGAGTGGCGTGTGGAAGTCTCTCACCAAAGAGGCCGCG
ACCGCGGGCCGCCCGGGGGCGGATACGGCGGTGGCGGTGGCGGCGGCGGT
GGTTACGGGGGCGGAGGCGGAGGCGGAGGCGGGTACGGCGCTCCCCGCGC
CGGCGGCGCCGCGCCCCGCACCGGCTACAAGGTCCGCATCACCGGCCTAC
CTGAGGGCATGCGCTGGTCCGAGCTGAAGGACTTCGTGCGCAAGGCGGGG
GACGTGACTTACGCCGACGTCCGGGGCGACGAAGGTGTCGCTGAGTTTTC
CAACCGCGACGACATGTCGAGGGCCGTGAGGGAGCTGGACGACACCTACT
TCGCGGACAGGCGCATCCGCGTGGACTACGACGATGGAGGCAGCGGCCGC
GGCCGTTCCCGTTCTCCCGTTAGGCGCCGCTCCCGCAGCCCTCCCCCCCG
CCGCGGAAGCCCCCCCCGCGGCAGGTCTCGCTCCCCTCCCGGCCGCGGCA
GGAGCCCCTACGGCCGCAGCCGCAGCCGCAGCCCCATTCGCGACAGGTGA
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