prot_Ecto-sp6_S_contig9.18143.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig9.18143.1
Unique Nameprot_Ecto-sp6_S_contig9.18143.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length373
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18143.1 vs. uniprot
Match: D8LLV6_ECTSI (tRNA-intron lyase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV6_ECTSI)

HSP 1 Score: 486 bits (1250), Expect = 3.170e-169
Identity = 304/326 (93.25%), Postives = 304/326 (93.25%), Query Frame = 0
Query:    1 MVLLRALLQGDVAKLFFPTHRCEERHREDRRHDGDGKGIGYILERSFGKVSEACSPREFPLISSXXXXXXXXXXPAATIGSGLRCLQLSLEEAFYLAHVDESLALAVPRANLVVPTAPIALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LSGEEAFGCGFGXXXXXXXXXXXXXPLLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDTGHKYGAHYVLYEGPPDECHSRYCVHVTGGNGSGDSWSHVKTMTRLMPDVAKSLLVCGVTYRPQGPTPETGLSPPIDTSSLAALAAAEVTALRFSRSRDSDG 324
            MVLLRALL GDVAKL FPTHRCEERHREDRRHDGDGKGIGYILERSFGKVSEACS RE P ISSXXXXXXXXXXPAATI SGLRCLQLSLEEAFYLAHVDESLALAVPRANLVVPTAPIALPXXXXXXXXXXXXX           XXXXXXXXXXXXXX  LSGEEAFGCGFGXXXXXXXXXXXXXPLLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDTGHKYGAHYVLYEGPPDECHSRYCVHVTGG G GDSWSHVKTMTRLMPDVAKSLLVCGVTYRPQGPT ETGLSPPIDTSSLAALAAAEVTALRFSRSRDSDG
Sbjct:    1 MVLLRALLLGDVAKLVFPTHRCEERHREDRRHDGDGKGIGYILERSFGKVSEACSQRELPSISSXXXXXXXXXXPAATIDSGLRCLQLSLEEAFYLAHVDESLALAVPRANLVVPTAPIALPXXXXXXXXXXXXXEEPPGLLHDWHXXXXXXXXXXXXXXXSLSGEEAFGCGFGXXXXXXXXXXXXXPLLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDTGHKYGAHYVLYEGPPDECHSRYCVHVTGGGGRGDSWSHVKTMTRLMPDVAKSLLVCGVTYRPQGPTLETGLSPPIDTSSLAALAAAEVTALRFSRSRDSDG 326          
BLAST of mRNA_Ecto-sp6_S_contig9.18143.1 vs. uniprot
Match: A0A482RRC4_9ARCH (tRNA_int_endo domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RRC4_9ARCH)

HSP 1 Score: 75.1 bits (183), Expect = 3.620e-12
Identity = 38/101 (37.62%), Postives = 55/101 (54.46%), Query Frame = 0
Query:  187 LLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDTGHKYGAHYVLYEGPPDECHSRYCVHVTGGNGSGDSWSHVKTMTRLMPDVAKSLLVCGVTYRPQG 287
            +LS E+ +R C  + P F    AVY HFR  +F V +  ++G  + LY  PP   HS + V V  G G   +W  +  +TR+ PDV K+LL+C V    +G
Sbjct:   97 ILSCEDFFRVCVQQDPLFSRRLAVYSHFRALNFVVRSALQFGGSFALYRAPPSRRHSEHLVLVLRG-GEALTWRELSALTRIAPDVMKTLLLCWVRQEGEG 196          
BLAST of mRNA_Ecto-sp6_S_contig9.18143.1 vs. uniprot
Match: A0A2R5LL66_9ACAR (tRNA-intron lyase (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LL66_9ACAR)

HSP 1 Score: 69.7 bits (169), Expect = 1.300e-9
Identity = 43/127 (33.86%), Postives = 60/127 (47.24%), Query Frame = 0
Query:  164 EEAFGCGFGXXXXXXXXXXXXXPLLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDTGHKYGAHYVLYEGPPDECHSRYCVHVTGGNGSG---------DSWSHVKTMTRLMPDVAKSLLVCGV 281
            EEAF   FG              LL   E W+  C  RP+FPA + VY HFR + + V TG KYG  Y+LY+  P   H+ + V V    G+           SW+ +  + RL  +  K++L+C V
Sbjct:  152 EEAFFLSFGLGCLIVQEDGKDLELL---ELWQRLCTLRPNFPARYTVYHHFRTKGWVVRTGSKYGTDYLLYKDGPPFYHATFSVLVRSTQGAELREVQDCRFRSWTSLSGLVRLNFNSTKTVLLCYV 275          
BLAST of mRNA_Ecto-sp6_S_contig9.18143.1 vs. uniprot
Match: M4YIW8_THEXX (tRNA intron endonuclease n=1 Tax=Thermoplasmatales archaeon (strain BRNA1) TaxID=1054217 RepID=M4YIW8_THEXX)

HSP 1 Score: 63.2 bits (152), Expect = 2.160e-7
Identity = 30/83 (36.14%), Postives = 39/83 (46.99%), Query Frame = 0
Query:  199 NRRPDFPAMFAVYRHFRIRSFTVDTGHKYGAHYVLYEGPPDECHSRYCVHVTGGNGSGDSWSHVKTMTRLMPDVAKSLLVCGV 281
              + +F      Y   R R   V TG KYG H+ +YEG PDECH+RY VH    +     W  +    RL   V K +L C +
Sbjct:  254 KNQDEFDLRLKAYYDLRARGLVVKTGFKYGTHFRVYEGSPDECHARYLVHAVTASKIA-MWPEISRTVRLSGGVRKEILFCRI 335          
BLAST of mRNA_Ecto-sp6_S_contig9.18143.1 vs. uniprot
Match: A0A0W7TI51_9ARCH (Endonuclease n=1 Tax=Candidatus Methanomethylophilus sp. 1R26 TaxID=1769296 RepID=A0A0W7TI51_9ARCH)

HSP 1 Score: 63.2 bits (152), Expect = 2.790e-7
Identity = 34/95 (35.79%), Postives = 45/95 (47.37%), Query Frame = 0
Query:  187 LLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDTGHKYGAHYVLYEGPPDECHSRYCVHVTGGNGSGDSWSHVKTMTRLMPDVAKSLLVCGV 281
            +LSA++        + +F      Y   R R   V TG KYG H+ +YEG PDECH+RY VH    +     W  +    RL   V K +L C V
Sbjct:  241 VLSADDIKSIGRKSQNEFGLRLRAYEDLRSRGLIVKTGFKYGTHFRVYEGSPDECHARYLVHAFQDSKVA-MWPEISRTVRLSGGVRKEILFCRV 334          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18143.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LLV6_ECTSI3.170e-16993.25tRNA-intron lyase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A482RRC4_9ARCH3.620e-1237.62tRNA_int_endo domain-containing protein (Fragment)... [more]
A0A2R5LL66_9ACAR1.300e-933.86tRNA-intron lyase (Fragment) n=1 Tax=Ornithodoros ... [more]
M4YIW8_THEXX2.160e-736.14tRNA intron endonuclease n=1 Tax=Thermoplasmatales... [more]
A0A0W7TI51_9ARCH2.790e-735.79Endonuclease n=1 Tax=Candidatus Methanomethylophil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006677tRNA intron endonuclease, catalytic domain-likePFAMPF01974tRNA_int_endocoord: 206..281
e-value: 9.6E-14
score: 51.2
IPR011856tRNA endonuclease-like domain superfamilyGENE3D3.40.1350.10coord: 201..287
e-value: 5.4E-16
score: 60.4
IPR006676tRNA-splicing endonucleasePANTHERPTHR21227TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2coord: 187..312
IPR036167tRNA intron endonuclease, catalytic domain-like superfamilySUPERFAMILY53032tRNA-intron endonuclease catalytic domain-likecoord: 202..283

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1342857..1345481 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18143.1mRNA_Ecto-sp6_S_contig9.18143.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig9 1342667..1345524 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig9.18143.1 ID=prot_Ecto-sp6_S_contig9.18143.1|Name=mRNA_Ecto-sp6_S_contig9.18143.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=373bp
MVLLRALLQGDVAKLFFPTHRCEERHREDRRHDGDGKGIGYILERSFGKV
SEACSPREFPLISSSQQQQQQQQEPAATIGSGLRCLQLSLEEAFYLAHVD
ESLALAVPRANLVVPTAPIALPPPPPPRGRRRSEEPPGLLHDQHRRQHTT
VEAEDAAGGSLSGEEAFGCGFGGGEEGGGGGGGGAPLLSAEEAWRYCCNR
RPDFPAMFAVYRHFRIRSFTVDTGHKYGAHYVLYEGPPDECHSRYCVHVT
GGNGSGDSWSHVKTMTRLMPDVAKSLLVCGVTYRPQGPTPETGLSPPIDT
SSLAALAAAEVTALRFSRSRDSDGGGGGGGGGKRAAREKSGTVLKARRPV
MESTGSGSGNSAKKKKKGKKIE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006677tRNA_intron_Endonuc_cat-like
IPR011856tRNA_endonuc-like_dom_sf
IPR006676tRNA_splic
IPR036167tRNA_intron_Endo_cat-like_sf