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Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18143.1 vs. uniprot
Match: D8LLV6_ECTSI (tRNA-intron lyase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV6_ECTSI) HSP 1 Score: 486 bits (1252), Expect = 2.830e-168 Identity = 304/326 (93.25%), Postives = 304/326 (93.25%), Query Frame = 2
Query: 44 MVLLRALLQGDVAKLFFPTHRCEERHREDRRHDGDGKGIGYILERSFGKVSEACSPREFPLISSXXXXXXXXXXPAATIGSGLRCLQLSLEEAFYLAHVDESLALAVPRANLVVPTAPIALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LSGEEAFGCGFGXXXXXXXXXXXXXPLLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDTGHKYGAHYVLYEGPPDECHSRYCVHVTGGNGSGDSWSHVKTMTRLMPDVAKSLLVCGVTYRPQGPTPETGLSPPIDTSSLAALAAAEVTALRFSRSRDSDG 1015
MVLLRALL GDVAKL FPTHRCEERHREDRRHDGDGKGIGYILERSFGKVSEACS RE P ISSXXXXXXXXXXPAATI SGLRCLQLSLEEAFYLAHVDESLALAVPRANLVVPTAPIALPXXXXXXXXXXXXX XXXXXXXXXXXXXX LSGEEAFGCGFGXXXXXXXXXXXXXPLLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDTGHKYGAHYVLYEGPPDECHSRYCVHVTGG G GDSWSHVKTMTRLMPDVAKSLLVCGVTYRPQGPT ETGLSPPIDTSSLAALAAAEVTALRFSRSRDSDG
Sbjct: 1 MVLLRALLLGDVAKLVFPTHRCEERHREDRRHDGDGKGIGYILERSFGKVSEACSQRELPSISSXXXXXXXXXXPAATIDSGLRCLQLSLEEAFYLAHVDESLALAVPRANLVVPTAPIALPXXXXXXXXXXXXXEEPPGLLHDWHXXXXXXXXXXXXXXXSLSGEEAFGCGFGXXXXXXXXXXXXXPLLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDTGHKYGAHYVLYEGPPDECHSRYCVHVTGGGGRGDSWSHVKTMTRLMPDVAKSLLVCGVTYRPQGPTLETGLSPPIDTSSLAALAAAEVTALRFSRSRDSDG 326
BLAST of mRNA_Ecto-sp6_S_contig9.18143.1 vs. uniprot
Match: A0A482RRC4_9ARCH (tRNA_int_endo domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RRC4_9ARCH) HSP 1 Score: 75.1 bits (183), Expect = 5.470e-12 Identity = 38/101 (37.62%), Postives = 55/101 (54.46%), Query Frame = 2
Query: 602 LLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDTGHKYGAHYVLYEGPPDECHSRYCVHVTGGNGSGDSWSHVKTMTRLMPDVAKSLLVCGVTYRPQG 904
+LS E+ +R C + P F AVY HFR +F V + ++G + LY PP HS + V V G G +W + +TR+ PDV K+LL+C V +G
Sbjct: 97 ILSCEDFFRVCVQQDPLFSRRLAVYSHFRALNFVVRSALQFGGSFALYRAPPSRRHSEHLVLVLRG-GEALTWRELSALTRIAPDVMKTLLLCWVRQEGEG 196
BLAST of mRNA_Ecto-sp6_S_contig9.18143.1 vs. uniprot
Match: A0A2R5LL66_9ACAR (tRNA-intron lyase (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LL66_9ACAR) HSP 1 Score: 69.7 bits (169), Expect = 1.990e-9 Identity = 43/127 (33.86%), Postives = 60/127 (47.24%), Query Frame = 2
Query: 533 EEAFGCGFGXXXXXXXXXXXXXPLLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDTGHKYGAHYVLYEGPPDECHSRYCVHVTGGNGSG---------DSWSHVKTMTRLMPDVAKSLLVCGV 886
EEAF FG LL E W+ C RP+FPA + VY HFR + + V TG KYG Y+LY+ P H+ + V V G+ SW+ + + RL + K++L+C V
Sbjct: 152 EEAFFLSFGLGCLIVQEDGKDLELL---ELWQRLCTLRPNFPARYTVYHHFRTKGWVVRTGSKYGTDYLLYKDGPPFYHATFSVLVRSTQGAELREVQDCRFRSWTSLSGLVRLNFNSTKTVLLCYV 275
BLAST of mRNA_Ecto-sp6_S_contig9.18143.1 vs. uniprot
Match: M4YIW8_THEXX (tRNA intron endonuclease n=1 Tax=Thermoplasmatales archaeon (strain BRNA1) TaxID=1054217 RepID=M4YIW8_THEXX) HSP 1 Score: 63.2 bits (152), Expect = 3.200e-7 Identity = 30/83 (36.14%), Postives = 39/83 (46.99%), Query Frame = 2
Query: 638 NRRPDFPAMFAVYRHFRIRSFTVDTGHKYGAHYVLYEGPPDECHSRYCVHVTGGNGSGDSWSHVKTMTRLMPDVAKSLLVCGV 886
+ +F Y R R V TG KYG H+ +YEG PDECH+RY VH + W + RL V K +L C +
Sbjct: 254 KNQDEFDLRLKAYYDLRARGLVVKTGFKYGTHFRVYEGSPDECHARYLVHAVTASKIA-MWPEISRTVRLSGGVRKEILFCRI 335
BLAST of mRNA_Ecto-sp6_S_contig9.18143.1 vs. uniprot
Match: A0A0W7TI51_9ARCH (Endonuclease n=1 Tax=Candidatus Methanomethylophilus sp. 1R26 TaxID=1769296 RepID=A0A0W7TI51_9ARCH) HSP 1 Score: 63.2 bits (152), Expect = 4.280e-7 Identity = 34/95 (35.79%), Postives = 45/95 (47.37%), Query Frame = 2
Query: 602 LLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDTGHKYGAHYVLYEGPPDECHSRYCVHVTGGNGSGDSWSHVKTMTRLMPDVAKSLLVCGV 886
+LSA++ + +F Y R R V TG KYG H+ +YEG PDECH+RY VH + W + RL V K +L C V
Sbjct: 241 VLSADDIKSIGRKSQNEFGLRLRAYEDLRSRGLIVKTGFKYGTHFRVYEGSPDECHARYLVHAFQDSKVA-MWPEISRTVRLSGGVRKEILFCRV 334
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 490.3 |
| Seed ortholog evalue | 7.7e-136 |
| Seed eggNOG ortholog | 2880.D8LLV6 |
| Preferred name | TSEN2 |
| Model size | 1352 |
| KEGG rclass | RC00002,RC00055,RC00523 |
| KEGG ko | ko:K01868,ko:K06133,ko:K15322,ko:K15436 |
| KEGG Reaction | R01625,R03663 |
| KEGG Pathway | ko00770,ko00970,map00770,map00970 |
| KEGG Module | M00359,M00360 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000003,GO:0000213,GO:0000214,GO:0000278,GO:0000281,GO:0000379,GO:0000394,GO:0000910,GO:0003006,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0004549,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006379,GO:0006388,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0007049,GO:0007275,GO:0008033,GO:0008150,GO:0008152,GO:0008356,GO:0008380,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010069,GO:0010070,GO:0010154,GO:0010467,GO:0015630,GO:0016020,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0016892,GO:0016894,GO:0019867,GO:0022402,GO:0022414,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0051301,GO:0061458,GO:0061640,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0098588,GO:0098805,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1902555,GO:1903047,GO:1905348 |
| Exons | 5 |
| EggNOG free text desc. | tRNA-intron endonuclease activity |
| EggNOG OGs | COG1676@1,KOG4685@2759 |
| Ec32 ortholog description | tRNA endonuclease-like domain |
| Ec32 ortholog | Ec-14_001840.1 |
| EC | 3.1.27.9,6.1.1.3 |
| Cds size | 1119 |
| COG Functional cat. | J |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1682350530.5640485-UTR-Ecto-sp6_S_contig9:1342666..1342856 | 1682350530.5640485-UTR-Ecto-sp6_S_contig9:1342666..1342856 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig9 1342667..1342856 - |
| 1682350530.6123247-UTR-Ecto-sp6_S_contig9:1345481..1345524 | 1682350530.6123247-UTR-Ecto-sp6_S_contig9:1345481..1345524 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig9 1345482..1345524 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1682350530.5736983-CDS-Ecto-sp6_S_contig9:1342856..1343165 | 1682350530.5736983-CDS-Ecto-sp6_S_contig9:1342856..1343165 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig9 1342857..1343165 - |
| 1682350530.5816414-CDS-Ecto-sp6_S_contig9:1343488..1343645 | 1682350530.5816414-CDS-Ecto-sp6_S_contig9:1343488..1343645 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig9 1343489..1343645 - |
| 1682350530.589218-CDS-Ecto-sp6_S_contig9:1344079..1344456 | 1682350530.589218-CDS-Ecto-sp6_S_contig9:1344079..1344456 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig9 1344080..1344456 - |
| 1682350530.5966103-CDS-Ecto-sp6_S_contig9:1344676..1344796 | 1682350530.5966103-CDS-Ecto-sp6_S_contig9:1344676..1344796 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig9 1344677..1344796 - |
| 1682350530.6044276-CDS-Ecto-sp6_S_contig9:1345325..1345481 | 1682350530.6044276-CDS-Ecto-sp6_S_contig9:1345325..1345481 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig9 1345326..1345481 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig9.18143.1 >prot_Ecto-sp6_S_contig9.18143.1 ID=prot_Ecto-sp6_S_contig9.18143.1|Name=mRNA_Ecto-sp6_S_contig9.18143.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=373bp
MVLLRALLQGDVAKLFFPTHRCEERHREDRRHDGDGKGIGYILERSFGKV SEACSPREFPLISSSQQQQQQQQEPAATIGSGLRCLQLSLEEAFYLAHVD ESLALAVPRANLVVPTAPIALPPPPPPRGRRRSEEPPGLLHDQHRRQHTT VEAEDAAGGSLSGEEAFGCGFGGGEEGGGGGGGGAPLLSAEEAWRYCCNR RPDFPAMFAVYRHFRIRSFTVDTGHKYGAHYVLYEGPPDECHSRYCVHVT GGNGSGDSWSHVKTMTRLMPDVAKSLLVCGVTYRPQGPTPETGLSPPIDT SSLAALAAAEVTALRFSRSRDSDGGGGGGGGGKRAAREKSGTVLKARRPV MESTGSGSGNSAKKKKKGKKIE* back to topmRNA from alignment at Ecto-sp6_S_contig9:1342667..1345524- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig9.18143.1 ID=mRNA_Ecto-sp6_S_contig9.18143.1|Name=mRNA_Ecto-sp6_S_contig9.18143.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2858bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1342667..1345524- (Ectocarpus species6 EcLAC_371) GAGTAGTCTCTCTCGTGATCTCGCACAGCCGGCCTGCCGCGCCATGGTCT
TGCTACGAGCCCTCCTTCAGGGGGATGTTGCCAAGCTATTTTTTCCAACC
CATAGGTGCGAAGAACGTCACCGAGAAGACCGCCGACATGATGGTGACGG
AAAGGGCATTGGATACATCCTTGAGAGGAGCTTCGGCAAGGTTTCCGAGG
TGCGGCCACCGGGTTTTATTTCTTGAATAGTTAGATCCGTAGTCTCATGC
TAAAATATCACATCAGAGATACATAGATGTGATCATGGATCAGTGCCAAG
ACAGCGGAACCCGAGAATGACAGAGGATTGTTGGCCATACAGCTCAGGGT
TGCCCGGCAAGCACAAACGCGGCCCACTTTCGGAAGCTTCAAAGCGTGTA
CTGCTGTATGTAGAGGAATGTGTAACATGCATATGCTCGCCCAACTTGCT
GCAGACTTCGTAGACGTGCCGCGCCGTTTGTTCATCCGACGAAACAGAGT
AACCCCGTAGTGCGCAAAGTGCGCTTTAGCGCTGTGAATGTGAGGTACAA
TGGACCAGTGGGGAATAACATATAAACCGGCAGGATTTTGGTTACGCCGC
ACATGCCGCGACGCCGCCCCCAAGAACTTTCCAAAGAACGGTCCGCCGCC
CGTAGTGTACACAAAGTGATAGCGAAGAGCAAACGCGGTTCACTGGCAAT
CATTTCCCACCCCTCTTGTTCAAAGCAGGCTTGTTCTCCACGGGAGTTTC
CTTTGATCTCGTCGTCGCAGCAGCAGCAGCAACAACAACAGGAGCCGGCC
GCGACGATCGGTTCGGGGCTACGGTGCCTGCAGCTGTCTCTGGAAGAGGT
ATGCTCTACAAGCAGTAGTCCTGATGCTTCGATCTCACCGATGCCGAGGT
TCGTACCAGCGGTGCCTTTTTGCTGCACTCCCGACTCAAGGTGAAGTACC
TCTCCCTACAGCCAGCAGTAGCCTTCACACAAAGTCACGATGATTTGGAG
CTTCAGACGCGGGAGAGGGTTGCCTCACCATCCTCCATCCCCTGCCCCCC
CCCTCGCCGTATCCGCAGGCGTTTTACCTTGCGCACGTCGACGAGTCCCT
GGCGCTAGCTGTCCCGAGGGCCAACCTTGTCGTTCCCACAGCCCCGATCG
CCTTGCCGCCGCCGCCGCCGCCGCGGGGAAGACGCAGGTCCGAAGAGCCC
CCTGGCCTCCTCCATGATCAACACCGCCGGCAACACACCACTGTGGAAGC
AGAAGATGCCGCCGGGGGTTCCCTGAGCGGAGAAGAAGCGTTCGGCTGCG
GTTTCGGCGGTGGCGAAGAGGGCGGCGGCGGCGGCGGCGGCGGCGCCCCG
CTGTTGAGCGCGGAGGAGGCATGGCGTTACTGCTGCAACCGGCGCCCGGA
TTTTCCGGCAATGTTTGCGGTGTACCGCCACTTTCGGATACGGAGGTAGG
TACGTACCGCGCCGTAGCGGAACGCCCGGACGTCTCTCGTTGTTTTCCTC
CAAGACACATGACTGTGGGAGGCTGTAGGCGGAACGGCGATGGCTCGAGT
TGTACTGGCACACCCGCAGCAGGACTAATTGTGCCATGTTTGACTAGAGC
GAACAGCAAAGGGACGGCACGCGCGCAAATGCTTGGACCCCGCGTGATGG
CACGGTTTCCCGGGCTATCCGGCCTTCCTTTCCTCTGTCTGGTCTGCTGC
GCTAGGTTCACCGACCAGCACGTCGAGATACGACAAGTACATGCATGCGT
AGTAACATGTGACGTCCTCTTGGACGCTGACGACCAAAACGTTGCGATTT
CTACATCTCTACATTTGTACTAGTGCACAGCTTGATGATTTCGATGAACT
GGGCCGTCGACCTCCGCGACACGAAACAGTTTCACGGTGGACACGGGCCA
CAAGTACGGGGCCCACTATGTGCTGTACGAGGGGCCGCCGGACGAGTGCC
ATTCGCGCTACTGTGTGCACGTCACGGGGGGTAACGGAAGCGGCGATTCG
TGGAGCCACGTCAAGACGATGACACGACTCATGCCGGTGAGGTTCTCTTG
AGTTGTCGTTCCTGCTCTGCATCTCAAGAGTAATTTTTTTTCTGCAAAGG
CGCGCCTTTGAGAACGAAACAGTAGGAAAATTACGGGAGGAACATGCTTC
TACATTGGTGTTGCTAATGGTTTTTGGTTCAGAAATCCGACGACCAGGTC
TCCTCTGGCCTCTGTGCCTGTTTTTGAAGACACAAAAATAACCGTACCCG
AAGGGGAGTAAAACCGGGGCACCGCTCGATTTTTTGCCAAACTCTTGTGT
GCCCGCACGCGTGTGGGTGCTCTCGCCGCCGCGTTTCTACTTTCACTCTC
GGCGCGCAGGATGTCGCAAAGTCTCTCCTGGTGTGCGGGGTGACGTATCG
TCCTCAAGGACCAACACCGGAGACAGGCTTGTCCCCGCCCATCGACACGT
CATCCCTGGCGGCCCTCGCGGCGGCCGAGGTGACGGCGTTGCGTTTCTCT
AGGTCCAGGGACTCCGACGGTGGCGGCGGCGGCGGCGGCGGCGGGAAGAG
AGCCGCTCGTGAAAAGAGTGGTACAGTTCTAAAAGCCAGGAGGCCTGTCA
TGGAATCAACTGGCTCTGGCAGCGGGAATTCCGCCAAGAAAAAGAAAAAG
GGCAAGAAAATCGAGTGAACTCGCGGGGGCTCCGGCTTGGTTTTTGGTGC
CGGAGAGGAGAAAGGCGTGGTGATCCTGATGCAAACTGGGGCATGTACGG
ACATTTCCGGACAAGTGCCCTAGCGGGGGGTGCGAAGTCGTGAAAGAGAG
ATGTCTGCTCGTATGTGATGGACCAAACGTTCGTTGTGGTAAGCCACCTC
CCGGCCCG back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1342667..1345524- >mRNA_Ecto-sp6_S_contig9.18143.1 ID=mRNA_Ecto-sp6_S_contig9.18143.1|Name=mRNA_Ecto-sp6_S_contig9.18143.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1119bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1342667..1345524- (Ectocarpus species6 EcLAC_371) ATGGTCTTGCTACGAGCCCTCCTTCAGGGGGATGTTGCCAAGCTATTTTT TCCAACCCATAGGTGCGAAGAACGTCACCGAGAAGACCGCCGACATGATG GTGACGGAAAGGGCATTGGATACATCCTTGAGAGGAGCTTCGGCAAGGTT TCCGAGGCTTGTTCTCCACGGGAGTTTCCTTTGATCTCGTCGTCGCAGCA GCAGCAGCAACAACAACAGGAGCCGGCCGCGACGATCGGTTCGGGGCTAC GGTGCCTGCAGCTGTCTCTGGAAGAGGCGTTTTACCTTGCGCACGTCGAC GAGTCCCTGGCGCTAGCTGTCCCGAGGGCCAACCTTGTCGTTCCCACAGC CCCGATCGCCTTGCCGCCGCCGCCGCCGCCGCGGGGAAGACGCAGGTCCG AAGAGCCCCCTGGCCTCCTCCATGATCAACACCGCCGGCAACACACCACT GTGGAAGCAGAAGATGCCGCCGGGGGTTCCCTGAGCGGAGAAGAAGCGTT CGGCTGCGGTTTCGGCGGTGGCGAAGAGGGCGGCGGCGGCGGCGGCGGCG GCGCCCCGCTGTTGAGCGCGGAGGAGGCATGGCGTTACTGCTGCAACCGG CGCCCGGATTTTCCGGCAATGTTTGCGGTGTACCGCCACTTTCGGATACG GAGTTTCACGGTGGACACGGGCCACAAGTACGGGGCCCACTATGTGCTGT ACGAGGGGCCGCCGGACGAGTGCCATTCGCGCTACTGTGTGCACGTCACG GGGGGTAACGGAAGCGGCGATTCGTGGAGCCACGTCAAGACGATGACACG ACTCATGCCGGATGTCGCAAAGTCTCTCCTGGTGTGCGGGGTGACGTATC GTCCTCAAGGACCAACACCGGAGACAGGCTTGTCCCCGCCCATCGACACG TCATCCCTGGCGGCCCTCGCGGCGGCCGAGGTGACGGCGTTGCGTTTCTC TAGGTCCAGGGACTCCGACGGTGGCGGCGGCGGCGGCGGCGGCGGGAAGA GAGCCGCTCGTGAAAAGAGTGGTACAGTTCTAAAAGCCAGGAGGCCTGTC ATGGAATCAACTGGCTCTGGCAGCGGGAATTCCGCCAAGAAAAAGAAAAA GGGCAAGAAAATCGAGTGA back to top
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