mRNA_Ecto-sp6_S_contig9.18012.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18012.1
Unique NamemRNA_Ecto-sp6_S_contig9.18012.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18012.1 vs. uniprot
Match: D7G8H7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8H7_ECTSI)

HSP 1 Score: 311 bits (797), Expect = 1.770e-102
Identity = 159/164 (96.95%), Postives = 162/164 (98.78%), Query Frame = 3 
Query:  318 MDDLLQPTCWAGMQAMGTLLGTMFGFVSAALLTPIHGGEREHGLPAAPGVIMGSSLGVLAAYSAGEGTQPLRQLVYLVLLSVGAAAVTTAACSWLTGDVIQNGGSVGIMVLATVASLGSTAVFTIDKHNMLLTRAATAAAFDDRERHEGLPHLHEESLMDLKAV 809
            MDDLLQPTCWAGMQAMGTLLGTMFGFVSAALLTPI GGEREHGLPAAPGVIMGSSLGVLAAYSAGEGTQPLRQL+YL+LLSVGAAAVTTAACSWLTGDV+QNGGSVGIMVLATVASLGSTAVFTIDKHNMLLTRAATAAAFDDRERHEGLPHL EESLMDLKAV
Sbjct:    1 MDDLLQPTCWAGMQAMGTLLGTMFGFVSAALLTPIDGGEREHGLPAAPGVIMGSSLGVLAAYSAGEGTQPLRQLLYLLLLSVGAAAVTTAACSWLTGDVLQNGGSVGIMVLATVASLGSTAVFTIDKHNMLLTRAATAAAFDDRERHEGLPHLQEESLMDLKAV 164
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8H7_ECTSI1.770e-10296.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:267920..270392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1362
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003080.1
Cds size495
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18012.1prot_Ecto-sp6_S_contig9.18012.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 268237..269842 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350518.3322191-UTR-Ecto-sp6_S_contig9:267919..2682361682350518.3322191-UTR-Ecto-sp6_S_contig9:267919..268236Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 267920..268236 +
1682350518.382781-UTR-Ecto-sp6_S_contig9:269842..2703921682350518.382781-UTR-Ecto-sp6_S_contig9:269842..270392Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 269843..270392 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350518.344218-CDS-Ecto-sp6_S_contig9:268236..2682781682350518.344218-CDS-Ecto-sp6_S_contig9:268236..268278Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 268237..268278 +
1682350518.3535745-CDS-Ecto-sp6_S_contig9:268794..2689021682350518.3535745-CDS-Ecto-sp6_S_contig9:268794..268902Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 268795..268902 +
1682350518.3658354-CDS-Ecto-sp6_S_contig9:269312..2694681682350518.3658354-CDS-Ecto-sp6_S_contig9:269312..269468Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 269313..269468 +
1682350518.374543-CDS-Ecto-sp6_S_contig9:269653..2698421682350518.374543-CDS-Ecto-sp6_S_contig9:269653..269842Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 269654..269842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18012.1

>prot_Ecto-sp6_S_contig9.18012.1 ID=prot_Ecto-sp6_S_contig9.18012.1|Name=mRNA_Ecto-sp6_S_contig9.18012.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=165bp
MDDLLQPTCWAGMQAMGTLLGTMFGFVSAALLTPIHGGEREHGLPAAPGV
IMGSSLGVLAAYSAGEGTQPLRQLVYLVLLSVGAAAVTTAACSWLTGDVI
QNGGSVGIMVLATVASLGSTAVFTIDKHNMLLTRAATAAAFDDRERHEGL
PHLHEESLMDLKAV*
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mRNA from alignment at Ecto-sp6_S_contig9:267920..270392+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18012.1 ID=mRNA_Ecto-sp6_S_contig9.18012.1|Name=mRNA_Ecto-sp6_S_contig9.18012.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2473bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:267920..270392+ (Ectocarpus species6 EcLAC_371)
CTCTCGTGGATGCACCCACTTCCGCACGCACCGCGCGAGATAACACCTTG
CCTACCAGCTTGCTAAGCACACCATCCTCCCTGGGAAGAAACACCTGTGA
CCCTTGCATGCCTACTTCAACAAAGTCTCGAGTCTAGGCCAGTCTAGAGG
GCTAATGTGTAGAGAAGCGCAGAAGTTGGAAACGGGAGTGCGGGAGTGGG
ATTGAAAACGCGGAGGAACCTGACAGAGTGAGGAACTTGAGGAACCCACC
AATTAGACGGCATTTCTCCTCCGAGCCGCCGAGATCCTCTTGCAGACTGG
GCAGCACGGCTGGGACAATGGATGACCTACTTCAACCAACATGCTGGGCA
GGGATGCAGGTGTGTAGTGTCTCGTAGTTTTATACATAGACCCAGTACAC
CACACGCAATGCAAATCAGCACATCATTGACATTTACTTAGTCTGCAAGT
ACGCTGTAGTTCCTTTACTTGCATCGCACCGCCCCGGCTACAGCAGTCTA
TCGTAGGTTGCATAGATATCGACCCCCTTGGACCGAGTTCACAACTCGTA
CTCGGCAGGAAAATCAGTGGCGGAGCCGGAAATCATTGGAACTGCCCCGT
CGAGGGCTTTAACGTACAGCAGTATCATATTCATGTCGGCATCCTCCTCG
TGCCACACTTGAGGTTTGAAATTCAGGGAGGTGTGGTGTTCTCCGCAATC
TACCGTACACACCAAGATATGCCAAGACATGCAGCAACTCTTGTACCGAG
CGGCCTTTCCTACTATGCAACACTCCTTGTACAAGGGAGGGGCGGACCGT
GCTTGTAGCGTACCGTAGTGTTCTTAAGGCTGCTACGGCACCGAGTCTTG
CTGATCATCAATACCTGCTCCCCAGGCGATGGGCACCCTGCTGGGTACGA
TGTTTGGATTTGTGTCTGCTGCTCTTCTCACGCCGATCCACGGGGGGGAG
AGAGAGCACGGGTTGCCAGCTGCACCTGGCGTGGTGAGTTTCCATTGATA
ACTCGACCACCGCGCGTGTTTTCCCAGCGAACCAAGCTTCACCATGTGCA
GTCTTGCTGAGTAACGCGGCCAATGTTGGTTATCTACGGTACGTTTTAGA
CAATATGTTGTCGTTATTTTTGACTCACTTACATACCGTCGCCTCTTCGT
CGTTACCCTCCAAACGCGTTCTTGTATATTTCTTTGACCGTGTCCGTTTC
ATTGGCAGGTACTCACTACTGTCGTGTGGTACTCAGTTTGATACCAATTC
TGCCCGACCCACGCTGCAGATTGGAATTTGTGGGATGTGTTCACTCCTGC
AATCGTACCCAATCAAGCCCACCATGTTCCAACCGTTGACTATATGGTAG
CTTAGGTTCTAGCCCTGCCCTGTCGATGTGACGATGATTGCAGATTATGG
GATCCTCTCTCGGGGTACTTGCAGCCTATTCGGCAGGGGAAGGGACTCAG
CCCCTCCGACAGCTGGTCTACCTTGTGCTGCTCAGCGTGGGGGCAGCCGC
AGTGACAACCGCAGCATGTAGCTGGCTAACGGGCGATGTCATACAGAATG
TGAGAGCAAATGTAGCAGGACGATGCTCGTAGTTGTTGAGAACGTGTGGA
CGAACTCTTTGTGTTCAATCAAGACGGCATTTACCGTTGTTTTTTTATGT
ATACATCATACGCGTTGTCGTCCATGTGAACGTTTAGTGCCGTCGTTTCT
TGAATCGACCCACGGTTGTGTGCTTGGTGCCCAGGGCGGGAGCGTCGGCA
TCATGGTGCTGGCAACAGTGGCGTCGCTAGGCTCGACGGCGGTCTTCACC
ATTGACAAGCACAACATGCTGCTCACACGAGCAGCCACGGCTGCGGCATT
CGATGACCGCGAGCGACACGAAGGATTGCCACATCTCCACGAGGAGTCCT
TGATGGATCTCAAGGCGGTCTGAAGTGTACGACCTCAAGTGGTCTGGTCA
GGAGCGTTAGACTTCAGTGGTTCGGTGATTCCTTGTAAAATTCGTACAGA
GCATAGACTAAGTGTGTAAGGTTCAGAGCGTAAGCGTTAAAAGGCCAATG
CGGTCAGGCCACGTTGGAGGGCTTGGTGTGTGCTGGTATGATCTGGTATG
ATGAGAACGAAGAACTTGCTGTTGGAGTGTGTAAGTTTGTCGGCGAAGGG
CCCTCTCACGTTATGCTACATGCTCGTCACGAGGTTTGGGGGACCCAGCG
CAAAAATCTACCGTTGGCGCAGATTTGTCCCCGCACTCTACCTGCCGTGC
GGTGAGGTCATGTGCGTCGTCTCTGTGGGTTGATTCCACCGCGGTACCGC
CTGCTGCTTTGTCTTGCGGCCCACTGAAATCCGGATTCAAGTTACACTCG
CTGGTCGATACCGACGAGGGTGCGCGGGCGCCGATTGATACGGCCTGGCC
ACCTTTGGCTGCGAGCGGTCGGGATACTGCTATTTTGTCGTGTGGAGTGC
AGAATATTTCATGCGTACCAAGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:267920..270392+

>mRNA_Ecto-sp6_S_contig9.18012.1 ID=mRNA_Ecto-sp6_S_contig9.18012.1|Name=mRNA_Ecto-sp6_S_contig9.18012.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=495bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:267920..270392+ (Ectocarpus species6 EcLAC_371)
ATGGATGACCTACTTCAACCAACATGCTGGGCAGGGATGCAGGCGATGGG
CACCCTGCTGGGTACGATGTTTGGATTTGTGTCTGCTGCTCTTCTCACGC
CGATCCACGGGGGGGAGAGAGAGCACGGGTTGCCAGCTGCACCTGGCGTG
ATTATGGGATCCTCTCTCGGGGTACTTGCAGCCTATTCGGCAGGGGAAGG
GACTCAGCCCCTCCGACAGCTGGTCTACCTTGTGCTGCTCAGCGTGGGGG
CAGCCGCAGTGACAACCGCAGCATGTAGCTGGCTAACGGGCGATGTCATA
CAGAATGGCGGGAGCGTCGGCATCATGGTGCTGGCAACAGTGGCGTCGCT
AGGCTCGACGGCGGTCTTCACCATTGACAAGCACAACATGCTGCTCACAC
GAGCAGCCACGGCTGCGGCATTCGATGACCGCGAGCGACACGAAGGATTG
CCACATCTCCACGAGGAGTCCTTGATGGATCTCAAGGCGGTCTGA
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