prot_Ecto-sp6_S_contig9.18012.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp6_S_contig9.18012.1
Unique Name	prot_Ecto-sp6_S_contig9.18012.1
Type	polypeptide
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length	165

Homology

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BLAST of mRNA_Ecto-sp6_S_contig9.18012.1 vs. uniprot
Match: D7G8H7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8H7_ECTSI)

HSP 1 Score: 313 bits (801), Expect = 1.180e-107
Identity = 159/164 (96.95%), Postives = 162/164 (98.78%), Query Frame = 0

Query:    1 MDDLLQPTCWAGMQAMGTLLGTMFGFVSAALLTPIHGGEREHGLPAAPGVIMGSSLGVLAAYSAGEGTQPLRQLVYLVLLSVGAAAVTTAACSWLTGDVIQNGGSVGIMVLATVASLGSTAVFTIDKHNMLLTRAATAAAFDDRERHEGLPHLHEESLMDLKAV 164
            MDDLLQPTCWAGMQAMGTLLGTMFGFVSAALLTPI GGEREHGLPAAPGVIMGSSLGVLAAYSAGEGTQPLRQL+YL+LLSVGAAAVTTAACSWLTGDV+QNGGSVGIMVLATVASLGSTAVFTIDKHNMLLTRAATAAAFDDRERHEGLPHL EESLMDLKAV
Sbjct:    1 MDDLLQPTCWAGMQAMGTLLGTMFGFVSAALLTPIDGGEREHGLPAAPGVIMGSSLGVLAAYSAGEGTQPLRQLLYLLLLSVGAAAVTTAACSWLTGDVLQNGGSVGIMVLATVASLGSTAVFTIDKHNMLLTRAATAAAFDDRERHEGLPHLQEESLMDLKAV 164

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig9.18012.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig9.18012.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7G8H7_ECTSI	1.180e-107	96.95	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 98..102
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 103..125
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..32
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 126..164
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 74..97
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 44..62
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 33..43
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 63..73
None	No IPR available	TMHMM	TMhelix		coord: 10..32
None	No IPR available	TMHMM	TMhelix		coord: 45..64
None	No IPR available	TMHMM	TMhelix		coord: 74..96
None	No IPR available	TMHMM	TMhelix		coord: 103..125

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig9	contig	Ecto-sp6_S_contig9:268237..269842 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig9.18012.1	mRNA_Ecto-sp6_S_contig9.18012.1	Ectocarpus species6 EcLAC_371	mRNA	Ecto-sp6_S_contig9 267920..270392 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp6_S_contig9.18012.1 ID=prot_Ecto-sp6_S_contig9.18012.1|Name=mRNA_Ecto-sp6_S_contig9.18012.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=165bp
MDDLLQPTCWAGMQAMGTLLGTMFGFVSAALLTPIHGGEREHGLPAAPGV
IMGSSLGVLAAYSAGEGTQPLRQLVYLVLLSVGAAAVTTAACSWLTGDVI
QNGGSVGIMVLATVASLGSTAVFTIDKHNMLLTRAATAAAFDDRERHEGL
PHLHEESLMDLKAV*