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Homology
BLAST of mRNA_Ecto-sp6_S_contig89.17975.1 vs. uniprot
Match: A0A6H5J9Z0_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Z0_9PHAE) HSP 1 Score: 290 bits (743), Expect = 4.410e-86 Identity = 148/172 (86.05%), Postives = 150/172 (87.21%), Query Frame = 2
Query: 125 MTTNKLRLTLDEEDQAKQ--------QQTKPCATPRGFREIPLQITPSTWKTDLTKCNVCGDRFTWLNHRHKCRNCWQAVCNSCAKSRKVLRARTAPKRVCDTCIQNCWTPRTLAVTKPAVAAAGV-TKADGDRRVSLTVSTSDHSCPVDATATAPLSPGTPAAAGFFGPGA 613
MTT KLRLTL+E QQ KPCATPRGFREIPLQITPSTWKTDLTKCNVCGDRFTWLNHRHKCRNCWQAVCNSCAKSRKV+RARTAPKRVCDTCIQNCWTPRT AVTKPA AA V TKADGDRRVSLTVSTSD SCPVDATATAPLSPGTPAAAGFFGPGA
Sbjct: 1 MTTTKLRLTLEEXXXXXXXXXXXXXXQQIKPCATPRGFREIPLQITPSTWKTDLTKCNVCGDRFTWLNHRHKCRNCWQAVCNSCAKSRKVIRARTAPKRVCDTCIQNCWTPRTPAVTKPAAAAGSVVTKADGDRRVSLTVSTSDGSCPVDATATAPLSPGTPAAAGFFGPGA 172
BLAST of mRNA_Ecto-sp6_S_contig89.17975.1 vs. uniprot
Match: D7G5L4_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L4_ECTSI) HSP 1 Score: 180 bits (457), Expect = 3.780e-50 Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 2
Query: 125 MTTNKLRLTLDEEDQAKQQQTKPCATPRGFREIPLQITPSTWKTDLTKCNVCGDRFTWLNHRHKCRNCWQAVCNSCAKSRKV 370
MTTNKLRLTLDEEDQAKQQQTKPCATPRGFREIPLQITPSTWKTDLTKCNVCGDRFTWLNHRHKCRNCWQAVCNSCAKSRK
Sbjct: 1 MTTNKLRLTLDEEDQAKQQQTKPCATPRGFREIPLQITPSTWKTDLTKCNVCGDRFTWLNHRHKCRNCWQAVCNSCAKSRKT 82
BLAST of mRNA_Ecto-sp6_S_contig89.17975.1 vs. uniprot
Match: D7G5L3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L3_ECTSI) HSP 1 Score: 80.5 bits (197), Expect = 1.420e-13 Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 2
Query: 1337 DEGGPMMVKLTPWTGVVMGAVAIGTGVAIAVVVRSAFSLVFFY 1465
DEGGPMMVKLTPWTGVVMGAVAIGTGVAIAVVVRSA SLVFFY
Sbjct: 149 DEGGPMMVKLTPWTGVVMGAVAIGTGVAIAVVVRSAVSLVFFY 191
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 62.4 |
| Seed ortholog evalue | 6.2e-07 |
| Seed eggNOG ortholog | 157072.XP_008874588.1 |
| Model size | 2570 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| EggNOG free text desc. | Protein present in Fab1, YOTB, Vac1, and EEA1 |
| EggNOG OGs | 2903I@1,2R6YG@2759 |
| Ec32 ortholog description | FYVE zinc finger |
| Ec32 ortholog | Ec-16_002350.1 |
| Cds size | 1344 |
| COG Functional cat. | O |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1682350512.9944832-UTR-Ecto-sp6_S_contig89:624710..624834 | 1682350512.9944832-UTR-Ecto-sp6_S_contig89:624710..624834 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig89 624711..624834 + |
| 1682350513.0336804-UTR-Ecto-sp6_S_contig89:628784..629217 | 1682350513.0336804-UTR-Ecto-sp6_S_contig89:628784..629217 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig89 628785..629217 + |
| 1682350513.0428696-UTR-Ecto-sp6_S_contig89:629232..629901 | 1682350513.0428696-UTR-Ecto-sp6_S_contig89:629232..629901 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig89 629233..629901 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1682350513.0053911-CDS-Ecto-sp6_S_contig89:624834..624991 | 1682350513.0053911-CDS-Ecto-sp6_S_contig89:624834..624991 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig89 624835..624991 + |
| 1682350513.014546-CDS-Ecto-sp6_S_contig89:625446..625532 | 1682350513.014546-CDS-Ecto-sp6_S_contig89:625446..625532 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig89 625447..625532 + |
| 1682350513.0240157-CDS-Ecto-sp6_S_contig89:627683..628784 | 1682350513.0240157-CDS-Ecto-sp6_S_contig89:627683..628784 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig89 627684..628784 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig89.17975.1 >prot_Ecto-sp6_S_contig89.17975.1 ID=prot_Ecto-sp6_S_contig89.17975.1|Name=mRNA_Ecto-sp6_S_contig89.17975.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=448bp
MTTNKLRLTLDEEDQAKQQQTKPCATPRGFREIPLQITPSTWKTDLTKCN VCGDRFTWLNHRHKCRNCWQAVCNSCAKSRKVLRARTAPKRVCDTCIQNC WTPRTLAVTKPAVAAAGVTKADGDRRVSLTVSTSDHSCPVDATATAPLSP GTPAAAGFFGPGATAAAAAATSSTAAAAAAAAAAAAAAAAEETRSSSNSS GNDGDSQSLPSGRRRRRDHRRQASVSLVMPPLQLLASPPGSSSSSFASPL SMLPPPTPAGGDDDEAGEEEGTVVFPPAGGVLTPSSASASTAVGRRGGGG GGAELSPFFGGRKKRSGRRESTGGRLESTGGRLESGGALGSGGWVDKVVA DLLPQRDAEKAEEEEEKQEDRGSNNILAALPEEEPAVDDDATAGGVKEEE EEDGDEGGPMMVKLTPWTGVVMGAVAIGTGVAIAVVVRSAFSLVFFY* back to topmRNA from alignment at Ecto-sp6_S_contig89:624711..629901+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig89.17975.1 ID=mRNA_Ecto-sp6_S_contig89.17975.1|Name=mRNA_Ecto-sp6_S_contig89.17975.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5191bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:624711..629901+ (Ectocarpus species6 EcLAC_371) AGCAGCGCCAGTCACACACAACATACCTTACGCCCCCTCCACGGACGGAC
AGCGTTCACCCTCCCGCTCGAAATCGAGAAGGGCTCTCTCACTCACACAG
CTGCTGCGTGCGGAGGCAGTCATCATGACCACCAACAAGCTCCGGCTGAC
TCTCGACGAGGAAGACCAGGCGAAGCAGCAGCAGACAAAGCCGTGCGCCA
CGCCCAGGGGCTTCAGAGAGATCCCCTTGCAGATCACCCCTTCTACGTGG
AAAACGGACCTCACCAAGTGCAACGTGTGTGGTAAGTGGGGTACAGAGCA
AGAACCTCTAGCTGCTTCCGAGGTCGCATCTGGCAGCTCACTGCGCGGTT
TTTTCTCGCTGTGAGCGACTTTTTCTTCGCGCACAATCGCCGTTGGCTCC
AGCGAATCCTGCGTACCTACCCCGTCGGGAAGTTCTTACATCGAGCAAAA
CCAGGCTGACTGCTGTTGCCGTGTGTGTCAGCTGCATCTCACAGCCTTCC
CCTCTGCAGCAGTTGCTCATCCACCTCTCAGGTTGCTTGCTCCCTCCAGC
TTTTTCCCGACGAAAAAAATGTTGGATTTGCTCTCAAAATTTCGCGCGCA
GTGCTCTCTCCTGTCGGACAAACCCCCCAAAGTAAACGGTTTTTCTCTTG
TGGCCCCTGTTTGTTCCACCTCCTCTCGCCGCCGGTGTTTGTTGCCCGCC
CCGCTCCACCGTCGCGTCGACGACCCACCCGCATAGGCGACCGCTTCACA
TGGCTAAACCACCGCCACAAGTGCCGCAACTGCTGGCAAGCCGTCTGTAA
CTCTTGCGCTAAGAGTCGGAAGGTGAGGATATCATGTTTTTGGCAATCCT
AGTAGAGAACTACAGGGGATGGATGTATTGTAAAATGCAAGTTACCTGTG
CAGATGTTTTCGTACTTCGCACCAGCTGGCATCACTGGTAGTGTATAGAC
TTAGAAAAAAAAGACTCGAAATAAGTCCAGTACCCAGCCGGGTTCCCTAC
ACTCACTGAAAAGACTCAACCACATCCCGTTCGACTGTGGATATATCTCG
AATGGGTAGTCTTTCTGTGTGTGTTTTTATTGTTCCTTAAATCCTACCAG
CACATGTCATCCGTACGCATACGTTTTTTCTGTTCTGCCTTTCGAGTTGT
ATCCGAAGAACCGCAGACGCACTGGCCCGCAAAAATCTGCTGTGCAAGTA
ACCCAAGTAGCGGTGTCTGCACGCACATACGCACATGATGAAGAGACTAT
TAATAACAGCAGTACGCTTACAACAGTAGTGCAGCGGCTGTGGTACGCTG
CGGGTGGCGGGTGTGCGTGGCTGAGATCACGTCGCGCGCGAAGCACATGG
ATATCAAGTACATGATGGAAGGTCGCTGATGGAAGACAAGGTAGTTGCGT
GGAGTACATCGAGTCTGACGCGCAGAAAGCTGACATCCTTGGAAATAACT
TGAGTGCGATAAAGTTTCTAAGGAACCGCCTCTTGCTCCTACAGGAGTAC
AGGAATGTAATCACCTCCCCTCTTGAAGACCGGACTTATGTCTTGAGGGT
TGGACGGTGTGTGTGCTGTTGAACGAAATTCGGAAGAATTGTGTACATGA
TGGGAAGAAAACGCATCGCTGTCAGACAGGGTAGCAGCTGGATGCTGAAT
GAGACACAATGATTTTGAGCTTATTTAGACAGCACGCTAAGTCGCACAAA
TCTGCCCCCTCAGCGGCCTGGATGTGAACCAACATCCCCGAGTGTCGTTG
TCTGCGTGTCTGACTCCTCGTCTTGGCAAGTCTTGGTTTAGGTTATTTTT
TTGTTGTCATGGTTTTCGCGGAAGGAAGTTCCTCTCAGCATGATACAGCA
CGTAGTGTTATCTATCCCCCCGCGACCCGTTGGCGGGCGTGATTTGGCAG
TTTGCCGTTTGCATCAGAGCTGTTGAATATCGCACACAACGAACGCCGTG
GTGCATACTGCTGGAAGTAGTGTATCCTATCCCCGAGTTCCAAGTTCCGC
CGATGTCGAGCGTCTTCCTTCGCTGGCTGGTGGTGTAGGAAGCCCGCTTC
GTCAGGAGACAGAGTAAGCATCTAGGTTCGCCGGAAAGTGCCTATGTACG
TCGCTGCTCGCGGGATAAGAGACGAATCGATGCATCCATCCGCCGGAGAA
GATAAAGAAGCTCTTGTGTGTGTGTTTGTTTGGACGCCCCGAGATCGGTA
CTCTTTTTTTTTGTTCTCTTGAGCAGCAAGAAAAGCGAAACATTTTGAGG
GGAGGTGCTGCGAGGTGGCAAGCCAAATGGCCGAGATCGAGTTCCCAAGA
AGCAACACTGCTGTGGGGTGCAAATATTTGCATTCAGTGTGCAGCACTCA
CGGCGATACTGACGCCCAGGAGAGATGGAAAGAAAGGCGAAACAATACAC
ACACAGTGTGCAGCACTCACGGCGATACTGACGCCCAGGAGAGATGGAAA
GAAAGGAGAAACAATACACACACACGCGCGCGCGTGCACGCCCGCCCGCC
CGCACACACGCCTTGGTAGACACGTACAATATTCTGTTGCTATCGTTTCT
GTATTTTTTTTAAAGCCGGAGAATAGCTTAGCCCCCCCCACGACGCCCCC
TCACGGGGTCTCTCAGTTCATGGCATTTACAAGTGCTTCGTGTTCTCAAC
CAAACTGAGACTGACGCCTTTTCATTGGTCAGCAGGTTGGCGCGGTCGAT
GCTAACAAGAAAGACACACACACGAGACACACCCGTGATTGCCAACGTAA
TCCCAACGTGAGGAAGGGGAGACATCGCGAGTGTATTGGCGAAACCGTTC
TTGCGTTGCCAGAAAGACAGCAATTGATCGGTACACCGGGAACACTTGAA
AAAAAAACACTTCAGCAGAGCGATTCCACAACAAACAAACGAACCAATCA
TTCATTCCCATTCATGTGTTCCACAACGACCCCCCCCCCCGTCCCCAATC
ACAACGATCCCCCAAAACACAAGGTCCTACGAGCCCGCACCGCGCCCAAG
AGAGTATGCGACACGTGCATCCAGAACTGCTGGACCCCCAGGACCCTGGC
CGTCACCAAGCCCGCCGTCGCCGCCGCCGGCGTCACCAAGGCGGACGGCG
ACCGCCGCGTCTCCCTGACCGTGTCCACGTCCGACCACTCGTGCCCGGTC
GACGCCACCGCTACCGCACCCCTCTCCCCCGGCACCCCCGCCGCCGCGGG
GTTCTTCGGGCCGGGCGCGACGGCGGCGGCGGCGGCGGCTACCTCGTCAA
CGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GAAGAGACAAGGAGCAGCAGCAACAGCAGTGGCAACGATGGCGACAGCCA
ATCCCTCCCATCGGGCCGCCGCCGTCGCCGCGACCACCGCCGCCAGGCTA
GCGTCAGCTTGGTCATGCCGCCCTTGCAACTGCTGGCCTCGCCGCCGGGG
TCTTCTTCTTCTTCTTTCGCGTCGCCGTTGTCGATGCTGCCGCCGCCGAC
GCCGGCTGGAGGTGACGACGACGAAGCGGGGGAGGAAGAAGGAACCGTGG
TGTTCCCGCCGGCAGGAGGCGTTCTTACTCCATCGTCGGCGTCTGCGTCT
ACCGCCGTTGGACGCCGCGGCGGCGGCGGCGGCGGCGCGGAGTTGTCCCC
GTTCTTCGGCGGCCGCAAGAAGAGGAGCGGTAGGCGGGAGAGCACCGGCG
GCCGTCTGGAGAGCACCGGCGGCCGTCTGGAGAGCGGTGGCGCTCTTGGC
AGCGGGGGTTGGGTCGACAAGGTGGTGGCCGATCTGCTGCCGCAGCGAGA
CGCGGAGAAGGCGGAGGAGGAGGAGGAGAAGCAAGAAGACCGCGGTAGCA
ACAATATCCTTGCCGCACTGCCGGAGGAGGAACCTGCTGTTGACGACGAC
GCTACCGCCGGTGGTGTGAAGGAGGAGGAGGAGGAGGATGGCGATGAGGG
AGGGCCGATGATGGTGAAGCTGACGCCGTGGACGGGGGTCGTGATGGGCG
CCGTGGCGATCGGCACAGGCGTCGCCATCGCCGTGGTTGTCCGCAGTGCC
TTCTCTCTCGTGTTCTTCTACTGAATTTCTGGTGTTTTTTTCTCTGTCTT
CTATCTGGTGTTCTTCTACTGAATGGCGTTCCGTTTGTTTTGTTGTTCGA
CTGGAATGGTTGAGTGCGCCCAAATTGGAGGATTGATTCTCCCTCCTCCC
TCCATTAGTTGAACGATCGCTCTGCGATTGACTGCTATTATCGTGTGTTT
ACATGCATGCGGGTATGGTCTTTTGTGTTCCATATGCATATTTGTTGCGA
GACTGTTGTGCAGAAGAAAGAGCACAAAACCGGAGCAACGAGAGTACGGA
GATGTTGAGAGCTAGGGATTGTTGTTGTGCACAAAGATAGAAAGAGTACA
CAACCAGAGCAAGGAAAATACGGAGACATTTAGGGCCAGGTGAAGAAAGG
CCCTCCTCTCGTGTGTGCTTCACTTCAGAACCCACCCGTACTGGTGTGTG
TTCTGGTGTGTGTTCTGCGAAGGGGGGAAGGGGCGGCGAAATACTGTTGC
GTGCGGTTGTGTCGCTCGTTTTAATTATTTTTCGATATGTTGGGTGAGGT
GAGGCGTGTTGCTCAGTGTAGAAAACGCGTCGGAAAATTATGCAGCCTAG
CCTGGGGCGTTTTTTATTGCACTTTTCTTGGGGCGAGTGTCGGGCAGGAG
CGTGCGCGTGTGGGTGGGGTGGTTGCTGAAAGTTGTACTACGAGAGGCAT
TAAAAACATATTAGTGTGTGGCTCCGGTAAGGTATTGTCTTCAACTACTC
ACCCAAATGATGAAGACTGTCCCATGTCTTGCCCCGGCGGCTACACTGCT
GGGCTCGCACCGGACGAGCGTCACTCGTAACGAATCATTACATTTGTTGT
TGTTAGGTCGTTGGTGTTGGTAATGCGTAATTGACTACCGAGACTATTTA
GTGAACGCGTCATTGGACAAGCAAGCATAAGTTGGACGATTGCCTGCCTC
CTTTCGATAGCGCTGCAGCATTTCCTGTTCGGAAGGAGAGTTGGTCTACC
CGGGTTTTGCACGGTTGTAGGTAGGTGTGGGGGGGGTTGTGCACGGTGAA
TATACGATCGCCGCTACATAATATTAATATTGGTTTGTGCGCGAGTGCAA
GAAGAGAAGAAGAGCGAACAACACACATTACATAACATTGC back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig89:624711..629901+ >mRNA_Ecto-sp6_S_contig89.17975.1 ID=mRNA_Ecto-sp6_S_contig89.17975.1|Name=mRNA_Ecto-sp6_S_contig89.17975.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1344bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:624711..629901+ (Ectocarpus species6 EcLAC_371) ATGACCACCAACAAGCTCCGGCTGACTCTCGACGAGGAAGACCAGGCGAA GCAGCAGCAGACAAAGCCGTGCGCCACGCCCAGGGGCTTCAGAGAGATCC CCTTGCAGATCACCCCTTCTACGTGGAAAACGGACCTCACCAAGTGCAAC GTGTGTGGCGACCGCTTCACATGGCTAAACCACCGCCACAAGTGCCGCAA CTGCTGGCAAGCCGTCTGTAACTCTTGCGCTAAGAGTCGGAAGGTCCTAC GAGCCCGCACCGCGCCCAAGAGAGTATGCGACACGTGCATCCAGAACTGC TGGACCCCCAGGACCCTGGCCGTCACCAAGCCCGCCGTCGCCGCCGCCGG CGTCACCAAGGCGGACGGCGACCGCCGCGTCTCCCTGACCGTGTCCACGT CCGACCACTCGTGCCCGGTCGACGCCACCGCTACCGCACCCCTCTCCCCC GGCACCCCCGCCGCCGCGGGGTTCTTCGGGCCGGGCGCGACGGCGGCGGC GGCGGCGGCTACCTCGTCAACGGCGGCAGCAGCAGCAGCAGCAGCAGCAG CAGCAGCAGCAGCAGCAGCAGAAGAGACAAGGAGCAGCAGCAACAGCAGT GGCAACGATGGCGACAGCCAATCCCTCCCATCGGGCCGCCGCCGTCGCCG CGACCACCGCCGCCAGGCTAGCGTCAGCTTGGTCATGCCGCCCTTGCAAC TGCTGGCCTCGCCGCCGGGGTCTTCTTCTTCTTCTTTCGCGTCGCCGTTG TCGATGCTGCCGCCGCCGACGCCGGCTGGAGGTGACGACGACGAAGCGGG GGAGGAAGAAGGAACCGTGGTGTTCCCGCCGGCAGGAGGCGTTCTTACTC CATCGTCGGCGTCTGCGTCTACCGCCGTTGGACGCCGCGGCGGCGGCGGC GGCGGCGCGGAGTTGTCCCCGTTCTTCGGCGGCCGCAAGAAGAGGAGCGG TAGGCGGGAGAGCACCGGCGGCCGTCTGGAGAGCACCGGCGGCCGTCTGG AGAGCGGTGGCGCTCTTGGCAGCGGGGGTTGGGTCGACAAGGTGGTGGCC GATCTGCTGCCGCAGCGAGACGCGGAGAAGGCGGAGGAGGAGGAGGAGAA GCAAGAAGACCGCGGTAGCAACAATATCCTTGCCGCACTGCCGGAGGAGG AACCTGCTGTTGACGACGACGCTACCGCCGGTGGTGTGAAGGAGGAGGAG GAGGAGGATGGCGATGAGGGAGGGCCGATGATGGTGAAGCTGACGCCGTG GACGGGGGTCGTGATGGGCGCCGTGGCGATCGGCACAGGCGTCGCCATCG CCGTGGTTGTCCGCAGTGCCTTCTCTCTCGTGTTCTTCTACTGA back to top
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