prot_Ecto-sp6_S_contig89.17975.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig89.17975.1
Unique Nameprot_Ecto-sp6_S_contig89.17975.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length448
Homology
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BLAST of mRNA_Ecto-sp6_S_contig89.17975.1 vs. uniprot
Match: A0A6H5J9Z0_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Z0_9PHAE)

HSP 1 Score: 290 bits (742), Expect = 2.180e-90
Identity = 148/172 (86.05%), Postives = 150/172 (87.21%), Query Frame = 0 
Query:    1 MTTNKLRLTLDEEDQAKQ--------QQTKPCATPRGFREIPLQITPSTWKTDLTKCNVCGDRFTWLNHRHKCRNCWQAVCNSCAKSRKVLRARTAPKRVCDTCIQNCWTPRTLAVTKPAVAAAGV-TKADGDRRVSLTVSTSDHSCPVDATATAPLSPGTPAAAGFFGPGA 163
            MTT KLRLTL+E              QQ KPCATPRGFREIPLQITPSTWKTDLTKCNVCGDRFTWLNHRHKCRNCWQAVCNSCAKSRKV+RARTAPKRVCDTCIQNCWTPRT AVTKPA AA  V TKADGDRRVSLTVSTSD SCPVDATATAPLSPGTPAAAGFFGPGA
Sbjct:    1 MTTTKLRLTLEEXXXXXXXXXXXXXXQQIKPCATPRGFREIPLQITPSTWKTDLTKCNVCGDRFTWLNHRHKCRNCWQAVCNSCAKSRKVIRARTAPKRVCDTCIQNCWTPRTPAVTKPAAAAGSVVTKADGDRRVSLTVSTSDGSCPVDATATAPLSPGTPAAAGFFGPGA 172
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BLAST of mRNA_Ecto-sp6_S_contig89.17975.1 vs. uniprot
Match: D7G5L4_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L4_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 1.750e-52
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0 
Query:    1 MTTNKLRLTLDEEDQAKQQQTKPCATPRGFREIPLQITPSTWKTDLTKCNVCGDRFTWLNHRHKCRNCWQAVCNSCAKSRKV 82
            MTTNKLRLTLDEEDQAKQQQTKPCATPRGFREIPLQITPSTWKTDLTKCNVCGDRFTWLNHRHKCRNCWQAVCNSCAKSRK 
Sbjct:    1 MTTNKLRLTLDEEDQAKQQQTKPCATPRGFREIPLQITPSTWKTDLTKCNVCGDRFTWLNHRHKCRNCWQAVCNSCAKSRKT 82
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BLAST of mRNA_Ecto-sp6_S_contig89.17975.1 vs. uniprot
Match: D7G5L3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L3_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 5.860e-14
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0 
Query:  405 DEGGPMMVKLTPWTGVVMGAVAIGTGVAIAVVVRSAFSLVFFY 447
            DEGGPMMVKLTPWTGVVMGAVAIGTGVAIAVVVRSA SLVFFY
Sbjct:  149 DEGGPMMVKLTPWTGVVMGAVAIGTGVAIAVVVRSAVSLVFFY 191
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig89.17975.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J9Z0_9PHAE2.180e-9086.05FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G5L4_ECTSI1.750e-5298.78FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G5L3_ECTSI5.860e-1497.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000306FYVE zinc fingerSMARTSM00064fyve_4coord: 37..102
e-value: 7.5E-5
score: 31.2
IPR000306FYVE zinc fingerPFAMPF01363FYVEcoord: 42..99
e-value: 5.0E-9
score: 36.2
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 31..113
e-value: 7.4E-13
score: 50.0
NoneNo IPR availablePANTHERPTHR13510FYVE-FINGER-CONTAINING RAB5 EFFECTOR PROTEIN RABENOSYN-5-RELATEDcoord: 5..245
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 420..446
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..419
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 447..447
NoneNo IPR availableTMHMMTMhelixcoord: 415..437
IPR017455Zinc finger, FYVE-relatedPROSITEPS50178ZF_FYVEcoord: 43..96
score: 10.619
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 43..102

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig89contigEcto-sp6_S_contig89:624835..628784 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig89.17975.1mRNA_Ecto-sp6_S_contig89.17975.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig89 624711..629901 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig89.17975.1 ID=prot_Ecto-sp6_S_contig89.17975.1|Name=mRNA_Ecto-sp6_S_contig89.17975.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=448bp
MTTNKLRLTLDEEDQAKQQQTKPCATPRGFREIPLQITPSTWKTDLTKCN
VCGDRFTWLNHRHKCRNCWQAVCNSCAKSRKVLRARTAPKRVCDTCIQNC
WTPRTLAVTKPAVAAAGVTKADGDRRVSLTVSTSDHSCPVDATATAPLSP
GTPAAAGFFGPGATAAAAAATSSTAAAAAAAAAAAAAAAAEETRSSSNSS
GNDGDSQSLPSGRRRRRDHRRQASVSLVMPPLQLLASPPGSSSSSFASPL
SMLPPPTPAGGDDDEAGEEEGTVVFPPAGGVLTPSSASASTAVGRRGGGG
GGAELSPFFGGRKKRSGRRESTGGRLESTGGRLESGGALGSGGWVDKVVA
DLLPQRDAEKAEEEEEKQEDRGSNNILAALPEEEPAVDDDATAGGVKEEE
EEDGDEGGPMMVKLTPWTGVVMGAVAIGTGVAIAVVVRSAFSLVFFY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000306Znf_FYVE
IPR013083Znf_RING/FYVE/PHD
IPR017455Znf_FYVE-rel
IPR011011Znf_FYVE_PHD