mRNA_Ecto-sp6_S_contig11.1276.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig11.1276.1 vs. uniprot
Match: D8LAX4_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAX4_ECTSI) HSP 1 Score: 622 bits (1604), Expect = 1.590e-214 Identity = 426/459 (92.81%), Postives = 430/459 (93.68%), Query Frame = 2
Query: 155 MAEGADAVSAASATATIGVKFTSSDKAAGQVSVSLEGTVGELKGAIRSQFDVEPKRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASXXXXXXXXXXXXXXXXXXX---PATXXXXAGLAAATQSMSGLXXXAVSSSPVGQAVATVARQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAAAGASAGGFAGGLGVLPPPGAFPQAGFGGGMGGGGMPDMATMARMAQNPAVMQGMXXXXXXXXXXXXXXXXXXAMQSVMARPGGLAQAFEAIQNNPAMSQMAQQMMQDPTALQRAAQMDFGGALSAGINAAPPNAAQGFQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXPTAAVPPASEGGGEAGEEGKEMTEDELIAEAIRKSMED 1522
MAEGADAVSAASATATIGVKFTSSDKAAGQVS+SLEGTVGELKGAIRSQFDVEPKRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGAS XXXXXXXXXXXXXXXXXX PAT AGLAAATQSMSGLXXXAVSSSPVGQAVATV+RQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAAAGAS GGFAGGLGVLPPPGAFPQAGFGGG GGGGMPDMATMARMAQNPAVMQG XXXXXXXXXXXXXXXXXX MQSVMARPGGLAQAFEAIQNNPAM PTALQRAAQMDFGGAL+AGINAAPPNAAQGFQAPXXXXXXXXXXXXXXXXXXXXXXXXXXX ASEGGGEAGEEGKEMTEDELIAEAIR+SMED
Sbjct: 1 MAEGADAVSAASATATIGVKFTSSDKAAGQVSISLEGTVGELKGAIRSQFDVEPKRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASPXXXXXXXXXXXXXXXXXXXXSPATPNPAAGLAAATQSMSGLXXXAVSSSPVGQAVATVSRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAAAGASTGGFAGGLGVLPPPGAFPQAGFGGGTGGGGMPDMATMARMAQNPAVMQGXXXXXXXXXXXXXXXXXXXXMQSVMARPGGLAQAFEAIQNNPAMXXXXXXXXXXPTALQRAAQMDFGGALAAGINAAPPNAAQGFQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEGGGEAGEEGKEMTEDELIAEAIRRSMED 459
BLAST of mRNA_Ecto-sp6_S_contig11.1276.1 vs. uniprot
Match: A0A7S2SMK3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SMK3_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 1.590e-18 Identity = 77/228 (33.77%), Postives = 122/228 (53.51%), Query Frame = 2
Query: 200 TIGVKFTSSDKAAGQVSVSLEGTVGELKGAIRSQFDVEP--KRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASXXXXXXXXXXXXXXXXXXXPATXXXXAGLAAATQSMSGLXXXAVSSSPVGQAVATVARQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRAL 877
T+ VK TS ++ +++V+ + +V K AI+++ V+P +R+I +G+IL KDDQ L K+ G TV++QV A+ P A +A T +G+ A+ ++ P R L TL KVIDNI +P E+KYR+++ ANA F+RKVG++PGG C+R +GF + G+ + + +LAPS AW+ L + R +Q L
Sbjct: 7 TVKVKRTSGEQMV-EMTVAPDLSVQAFKEAIQAKLGVDPAAQRLIHKGKIL-KDDQGLDVYKVATGETVLLQVTQRPAAAGATPSGTQAPVAAAAPMPPTA----AAMAGTTAPTTGIQA----------ALEELSSNPPDALRLGLETLLKVIDNIIQNPNEDKYRRLRPANATFNRKVGSLPGGLRCVREMGFTD-GEEEGTLILAPSTEAWHHLNSCRRLVQEKL 217
BLAST of mRNA_Ecto-sp6_S_contig11.1276.1 vs. uniprot
Match: A0A7S2SNT8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNT8_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 2.140e-17 Identity = 77/228 (33.77%), Postives = 122/228 (53.51%), Query Frame = 2
Query: 200 TIGVKFTSSDKAAGQVSVSLEGTVGELKGAIRSQFDVEP--KRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASXXXXXXXXXXXXXXXXXXXPATXXXXAGLAAATQSMSGLXXXAVSSSPVGQAVATVARQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRAL 877
T+ VK TS ++ +++V+ + +V K AI+++ V+P +R+I +G+IL KDDQ L K+ G TV++QV A+ P A +A T +G+ A+ ++ P R L TL KVIDNI +P E+KYR+++ ANA F+RKVG++PGG C+R +GF + G+ + + +LAPS AW+ L + R +Q L
Sbjct: 7 TVKVKRTSGEQMV-EMTVAPDLSVQAFKEAIQAKLGVDPAAQRLIHKGKIL-KDDQGLDVYKVATGETVLLQVTQRPAAAGATPSGTQAPVAAAAPMPPTA----AAMAGTTAPTTGIQA----------ALEELSSNPPDALRLGLETLLKVIDNIIQNPNEDKYRRLRPANATFNRKVGSLPGGLRCVREMGFTD-GEEEGTLILAPSTEAWHHLNSCRRLVQEKL 217
BLAST of mRNA_Ecto-sp6_S_contig11.1276.1 vs. uniprot
Match: A0A836CLK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLK8_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.070e-15 Identity = 107/355 (30.14%), Postives = 143/355 (40.28%), Query Frame = 2
Query: 203 IGVKFTSSDKAAGQVSV---SLEGTVGELKGAIRSQFDVEPKRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASXXXXXXXXXXXXXXXXXXXPATXXXXAGLAAATQSMSGLXXXAVSSSPVGQAVATVARQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAAAGASAGGFAGGLGVLPPPGAFP--------------QAGFGGGMGGGGMPDMATMARMAQNPAVMQGMXXXXXXXXXXXXXXXXXXAMQSVMARPGGLAQAFEAIQNNPAMSQMAQQM 1216
+ VKFT+ +G + T+ +LK AI Q KRIIFQGR+L+KD+ TL + K++DG T+ V DNI HP EEKYR IK++N F+ +VG VPGG A ++ALGF + ++W+L PS AW L GR +Q L++ LG PP +AG G MGG A M ++PA++Q XXXXXXXXXXXXXXX MQ++ P + Q A+Q+NP AQQM
Sbjct: 131 VNVKFTTGGDGSGGTLILPSQANTTIAQLKSAITEQLGKATKRIIFQGRVLSKDEATLAEMKVQDGQTI----------------------------------------------------------------------------------HVADNIINHPLEEKYRSIKKSNKSFAARVGNVPGGAAAIQALGFTDSPTVPDTWVLLPSADAWPTLRQGRDLLQSTLSS------------------LGTAAPPXXXXXXXXXXXXXXXXXXRAGGAGAMGG----MEAAMGAAMRDPAMLQRXXXXXXXXXXXXXXXXMAAQMQALAQNPAMMQQMMSAMQSNPXXXXQAQQM 381
BLAST of mRNA_Ecto-sp6_S_contig11.1276.1 vs. uniprot
Match: A0A448ZQX1_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQX1_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 3.920e-12 Identity = 96/334 (28.74%), Postives = 136/334 (40.72%), Query Frame = 2
Query: 566 SSPVGQAVATV-ARQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGF---VEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAAAGASAGGFAGGL--GVLPPPGAFPQAGFGGGMGGGGMPDMA---TMARMAQNPAVMQGMXXXXXXXXXXXXXXXXXXAMQSVMARPGG---LAQAFEAIQNNPAMSQMAQQMMQDPTAL---QRAAQMDFGGALSAGINAAPPNAAQGFQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXPTAAVPPASEGGGEAGEEGKEMTEDELIAEAIRKSMED 1522
S P+G A+ + + P V + TL KV+ NI +HP EEKYR++K+ N F +++G + GG CM A GF V+ G+ E + L + +WN L + ++ A+A A G AG L G PPPG P D A +++RM +P +Q Q + + P L Q E + NNPAM Q + M+DP + QRA M GG PP A P A PP ++ G TE+E+IAEAIR+S+ED
Sbjct: 145 SDPLGLALERLRSGNPPSVYATAVGTLGKVLGNIVSHPMEEKYRRVKKQNPAFRKRLGGLAGGHDCMLACGFRVEVDEGENAEVYKLHATADSWNALVEAKTRVEEAVAKAAAGDRQQPVQAPGPAGLLPGGGFPPPGGLPN-------------DPALRDSVSRMMSDPRALQAALQNPML-------------QQMIRSDPSVSPMLRQHLEQLSNNPAMLQQMARQMRDPATMAMFQRA--MGEGG---------PPGPAAPPGGP-----------------------------APQPPRNDSG---------QTEEEMIAEAIRRSLED 403
BLAST of mRNA_Ecto-sp6_S_contig11.1276.1 vs. uniprot
Match: A0A7S2EXK5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXK5_TRICV) HSP 1 Score: 72.8 bits (177), Expect = 1.360e-9 Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 2
Query: 623 RECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGF-VEH---GDA-QESWLLAPSEAAWNVLTAGRVDIQRALA 880
+ L TL K++ N+K+HP EEKYR++K+ NA F R++G +PGG M A GF VE GDA +E + L PS AW L A + + ALA
Sbjct: 194 KTALQTLDKLLGNVKSHPMEEKYRRVKKGNAAFQRRLGGLPGGHDAMLAAGFTVEQECSGDACEEIYSLTPSADAWPKLVAAKDAVATALA 284
BLAST of mRNA_Ecto-sp6_S_contig11.1276.1 vs. uniprot
Match: A0A7S2IH61_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IH61_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 2.590e-9 Identity = 57/165 (34.55%), Postives = 82/165 (49.70%), Query Frame = 2
Query: 632 LTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEA-AWNVLTA------GRVDI-QRALATLPGAPAAAGASAGGFAGGLGVLPPPGAFPQAGFGG------GMGGGGMPD------MATMARMAQNPAVMQGM 1066
L TL+K++ NI +HP EEKYR++K+ NA F R++G + G M A+GFVE + E + + + A AW L G V++ +R + AP A +G + PP GFGG GMGGGG+P +A M NP ++GM
Sbjct: 65 LQTLSKLLTNITSHPMEEKYRRVKKGNAAFQRRLGGLEKGHEVMLAVGFVEKSEEGEDYYVMEASAEAWPALVKNAEVVKGEVEVVKRRVEGAGSAPTPQPA--------VGTMAPP--MGAGGFGGSXXXXSGMGGGGLPQNIPPGMQDAVANMMSNPEALRGM 219
BLAST of mRNA_Ecto-sp6_S_contig11.1276.1 vs. uniprot
Match: A0A1Z5JL72_FISSO (Ubiquitin-like domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JL72_FISSO) HSP 1 Score: 67.0 bits (162), Expect = 6.080e-8 Identity = 68/207 (32.85%), Postives = 108/207 (52.17%), Query Frame = 2
Query: 254 SLEGTVGELKGAIRSQFDVEPKRIIFQGRILNKDDQTL--QDCKLKDGLTV-VVQVLAPGASXXXXXXXXXXXXXXXXXXXPATXXXXAGLAAATQSMSGLXXXAVSSSPVGQAVATVARQPAGVARE----CLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGF-VEHGDAQESWLLAPSEAAWNVLTA 850
S+ T + A ++ +E ++IF+GR+++ +D L + KL+DG + + AP AS XXXXXXXXX + + L+ + + A ++ P+ A+AT+ AG+++ + TL K++ NI P EEKYR +K++NA F RK+G GG+ M+A GF VE + E + L S AW L A
Sbjct: 26 SVTSTQLRQQAAEATKIPIESLKLIFRGRLISNNDTQLAVSEFKLEDGSVLHCMGKPAPAASSAEGGVSXXXXXXXXXLASASAAQPASRLSFNAFPSASVSAPAPTADPLQAALATLR---AGLSQADYLTAVQTLEKILSNIVTQPMEEKYRSLKKSNAAFQRKLGGKRGGDELMKAAGFIVEIREGVEYYALQASAEAWPKLVA 229
BLAST of mRNA_Ecto-sp6_S_contig11.1276.1 vs. uniprot
Match: A0A7S3VBJ8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VBJ8_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 9.110e-8 Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 2
Query: 632 LTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQR 871
+TTL K++ NI P EEKYRK+KRANA F +++G + G M LGF + Q ++L PS AW L G+ ++ R
Sbjct: 46 ITTLQKILGNIVTKPQEEKYRKVKRANAAFQKRLGRLNGAHDVMTMLGFSVND--QNEYVLVPSPEAWPKLVEGKKEVDR 123
BLAST of mRNA_Ecto-sp6_S_contig11.1276.1 vs. uniprot
Match: A0A7S4EG88_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG88_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 1.100e-7 Identity = 37/80 (46.25%), Postives = 48/80 (60.00%), Query Frame = 2
Query: 608 PAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGF-VEHGDAQESWLLAPSEAAWNVL 844
P V + TL KV+ NI A+P EEKYR++KR N F +++G + GG ACM A GF VE A+E + L S WN L
Sbjct: 196 PPSVYATAVATLEKVLTNIVANPMEEKYRRVKRQNPAFRKRLGGLGGGHACMLACGFTVEQQAAEEVYQLRASADRWNNL 275 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig11.1276.1 >prot_Ecto-sp6_S_contig11.1276.1 ID=prot_Ecto-sp6_S_contig11.1276.1|Name=mRNA_Ecto-sp6_S_contig11.1276.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=457bp MAEGADAVSAASATATIGVKFTSSDKAAGQVSVSLEGTVGELKGAIRSQFback to top mRNA from alignment at Ecto-sp6_S_contig11:943671..947431- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig11.1276.1 ID=mRNA_Ecto-sp6_S_contig11.1276.1|Name=mRNA_Ecto-sp6_S_contig11.1276.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3761bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:943671..947431- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig11:943671..947431- >mRNA_Ecto-sp6_S_contig11.1276.1 ID=mRNA_Ecto-sp6_S_contig11.1276.1|Name=mRNA_Ecto-sp6_S_contig11.1276.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1371bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:943671..947431- (Ectocarpus species6 EcLAC_371)back to top |