mRNA_Ecto-sp6_S_contig11.1276.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig11.1276.1
Unique NamemRNA_Ecto-sp6_S_contig11.1276.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig11.1276.1 vs. uniprot
Match: D8LAX4_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAX4_ECTSI)

HSP 1 Score: 622 bits (1604), Expect = 1.590e-214
Identity = 426/459 (92.81%), Postives = 430/459 (93.68%), Query Frame = 2
Query:  155 MAEGADAVSAASATATIGVKFTSSDKAAGQVSVSLEGTVGELKGAIRSQFDVEPKRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASXXXXXXXXXXXXXXXXXXX---PATXXXXAGLAAATQSMSGLXXXAVSSSPVGQAVATVARQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAAAGASAGGFAGGLGVLPPPGAFPQAGFGGGMGGGGMPDMATMARMAQNPAVMQGMXXXXXXXXXXXXXXXXXXAMQSVMARPGGLAQAFEAIQNNPAMSQMAQQMMQDPTALQRAAQMDFGGALSAGINAAPPNAAQGFQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXPTAAVPPASEGGGEAGEEGKEMTEDELIAEAIRKSMED 1522
            MAEGADAVSAASATATIGVKFTSSDKAAGQVS+SLEGTVGELKGAIRSQFDVEPKRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGAS XXXXXXXXXXXXXXXXXX   PAT    AGLAAATQSMSGLXXXAVSSSPVGQAVATV+RQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAAAGAS GGFAGGLGVLPPPGAFPQAGFGGG GGGGMPDMATMARMAQNPAVMQG XXXXXXXXXXXXXXXXXX MQSVMARPGGLAQAFEAIQNNPAM          PTALQRAAQMDFGGAL+AGINAAPPNAAQGFQAPXXXXXXXXXXXXXXXXXXXXXXXXXXX       ASEGGGEAGEEGKEMTEDELIAEAIR+SMED
Sbjct:    1 MAEGADAVSAASATATIGVKFTSSDKAAGQVSISLEGTVGELKGAIRSQFDVEPKRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASPXXXXXXXXXXXXXXXXXXXXSPATPNPAAGLAAATQSMSGLXXXAVSSSPVGQAVATVSRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAAAGASTGGFAGGLGVLPPPGAFPQAGFGGGTGGGGMPDMATMARMAQNPAVMQGXXXXXXXXXXXXXXXXXXXXMQSVMARPGGLAQAFEAIQNNPAMXXXXXXXXXXPTALQRAAQMDFGGALAAGINAAPPNAAQGFQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEGGGEAGEEGKEMTEDELIAEAIRRSMED 459          
BLAST of mRNA_Ecto-sp6_S_contig11.1276.1 vs. uniprot
Match: A0A7S2SMK3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SMK3_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.590e-18
Identity = 77/228 (33.77%), Postives = 122/228 (53.51%), Query Frame = 2
Query:  200 TIGVKFTSSDKAAGQVSVSLEGTVGELKGAIRSQFDVEP--KRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASXXXXXXXXXXXXXXXXXXXPATXXXXAGLAAATQSMSGLXXXAVSSSPVGQAVATVARQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRAL 877
            T+ VK TS ++   +++V+ + +V   K AI+++  V+P  +R+I +G+IL KDDQ L   K+  G TV++QV    A+                   P      A +A  T   +G+            A+  ++  P    R  L TL KVIDNI  +P E+KYR+++ ANA F+RKVG++PGG  C+R +GF + G+ + + +LAPS  AW+ L + R  +Q  L
Sbjct:    7 TVKVKRTSGEQMV-EMTVAPDLSVQAFKEAIQAKLGVDPAAQRLIHKGKIL-KDDQGLDVYKVATGETVLLQVTQRPAAAGATPSGTQAPVAAAAPMPPTA----AAMAGTTAPTTGIQA----------ALEELSSNPPDALRLGLETLLKVIDNIIQNPNEDKYRRLRPANATFNRKVGSLPGGLRCVREMGFTD-GEEEGTLILAPSTEAWHHLNSCRRLVQEKL 217          
BLAST of mRNA_Ecto-sp6_S_contig11.1276.1 vs. uniprot
Match: A0A7S2SNT8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNT8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.140e-17
Identity = 77/228 (33.77%), Postives = 122/228 (53.51%), Query Frame = 2
Query:  200 TIGVKFTSSDKAAGQVSVSLEGTVGELKGAIRSQFDVEP--KRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASXXXXXXXXXXXXXXXXXXXPATXXXXAGLAAATQSMSGLXXXAVSSSPVGQAVATVARQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRAL 877
            T+ VK TS ++   +++V+ + +V   K AI+++  V+P  +R+I +G+IL KDDQ L   K+  G TV++QV    A+                   P      A +A  T   +G+            A+  ++  P    R  L TL KVIDNI  +P E+KYR+++ ANA F+RKVG++PGG  C+R +GF + G+ + + +LAPS  AW+ L + R  +Q  L
Sbjct:    7 TVKVKRTSGEQMV-EMTVAPDLSVQAFKEAIQAKLGVDPAAQRLIHKGKIL-KDDQGLDVYKVATGETVLLQVTQRPAAAGATPSGTQAPVAAAAPMPPTA----AAMAGTTAPTTGIQA----------ALEELSSNPPDALRLGLETLLKVIDNIIQNPNEDKYRRLRPANATFNRKVGSLPGGLRCVREMGFTD-GEEEGTLILAPSTEAWHHLNSCRRLVQEKL 217          
BLAST of mRNA_Ecto-sp6_S_contig11.1276.1 vs. uniprot
Match: A0A836CLK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLK8_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.070e-15
Identity = 107/355 (30.14%), Postives = 143/355 (40.28%), Query Frame = 2
Query:  203 IGVKFTSSDKAAGQVSV---SLEGTVGELKGAIRSQFDVEPKRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASXXXXXXXXXXXXXXXXXXXPATXXXXAGLAAATQSMSGLXXXAVSSSPVGQAVATVARQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAAAGASAGGFAGGLGVLPPPGAFP--------------QAGFGGGMGGGGMPDMATMARMAQNPAVMQGMXXXXXXXXXXXXXXXXXXAMQSVMARPGGLAQAFEAIQNNPAMSQMAQQM 1216
            + VKFT+    +G   +       T+ +LK AI  Q     KRIIFQGR+L+KD+ TL + K++DG T+                                                                                   V DNI  HP EEKYR IK++N  F+ +VG VPGG A ++ALGF +     ++W+L PS  AW  L  GR  +Q  L++                  LG   PP                  +AG  G MGG      A M    ++PA++Q  XXXXXXXXXXXXXXX    MQ++   P  + Q   A+Q+NP     AQQM
Sbjct:  131 VNVKFTTGGDGSGGTLILPSQANTTIAQLKSAITEQLGKATKRIIFQGRVLSKDEATLAEMKVQDGQTI----------------------------------------------------------------------------------HVADNIINHPLEEKYRSIKKSNKSFAARVGNVPGGAAAIQALGFTDSPTVPDTWVLLPSADAWPTLRQGRDLLQSTLSS------------------LGTAAPPXXXXXXXXXXXXXXXXXXRAGGAGAMGG----MEAAMGAAMRDPAMLQRXXXXXXXXXXXXXXXXMAAQMQALAQNPAMMQQMMSAMQSNPXXXXQAQQM 381          
BLAST of mRNA_Ecto-sp6_S_contig11.1276.1 vs. uniprot
Match: A0A448ZQX1_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQX1_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.920e-12
Identity = 96/334 (28.74%), Postives = 136/334 (40.72%), Query Frame = 2
Query:  566 SSPVGQAVATV-ARQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGF---VEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAAAGASAGGFAGGL--GVLPPPGAFPQAGFGGGMGGGGMPDMA---TMARMAQNPAVMQGMXXXXXXXXXXXXXXXXXXAMQSVMARPGG---LAQAFEAIQNNPAMSQMAQQMMQDPTAL---QRAAQMDFGGALSAGINAAPPNAAQGFQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXPTAAVPPASEGGGEAGEEGKEMTEDELIAEAIRKSMED 1522
            S P+G A+  + +  P  V    + TL KV+ NI +HP EEKYR++K+ N  F +++G + GG  CM A GF   V+ G+  E + L  +  +WN L   +  ++ A+A            A G AG L  G  PPPG  P              D A   +++RM  +P  +Q                      Q + + P     L Q  E + NNPAM Q   + M+DP  +   QRA  M  GG         PP  A     P                             A  PP ++ G          TE+E+IAEAIR+S+ED
Sbjct:  145 SDPLGLALERLRSGNPPSVYATAVGTLGKVLGNIVSHPMEEKYRRVKKQNPAFRKRLGGLAGGHDCMLACGFRVEVDEGENAEVYKLHATADSWNALVEAKTRVEEAVAKAAAGDRQQPVQAPGPAGLLPGGGFPPPGGLPN-------------DPALRDSVSRMMSDPRALQAALQNPML-------------QQMIRSDPSVSPMLRQHLEQLSNNPAMLQQMARQMRDPATMAMFQRA--MGEGG---------PPGPAAPPGGP-----------------------------APQPPRNDSG---------QTEEEMIAEAIRRSLED 403          
BLAST of mRNA_Ecto-sp6_S_contig11.1276.1 vs. uniprot
Match: A0A7S2EXK5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXK5_TRICV)

HSP 1 Score: 72.8 bits (177), Expect = 1.360e-9
Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  623 RECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGF-VEH---GDA-QESWLLAPSEAAWNVLTAGRVDIQRALA 880
            +  L TL K++ N+K+HP EEKYR++K+ NA F R++G +PGG   M A GF VE    GDA +E + L PS  AW  L A +  +  ALA
Sbjct:  194 KTALQTLDKLLGNVKSHPMEEKYRRVKKGNAAFQRRLGGLPGGHDAMLAAGFTVEQECSGDACEEIYSLTPSADAWPKLVAAKDAVATALA 284          
BLAST of mRNA_Ecto-sp6_S_contig11.1276.1 vs. uniprot
Match: A0A7S2IH61_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IH61_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.590e-9
Identity = 57/165 (34.55%), Postives = 82/165 (49.70%), Query Frame = 2
Query:  632 LTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEA-AWNVLTA------GRVDI-QRALATLPGAPAAAGASAGGFAGGLGVLPPPGAFPQAGFGG------GMGGGGMPD------MATMARMAQNPAVMQGM 1066
            L TL+K++ NI +HP EEKYR++K+ NA F R++G +  G   M A+GFVE  +  E + +  + A AW  L        G V++ +R +     AP    A        +G + PP      GFGG      GMGGGG+P          +A M  NP  ++GM
Sbjct:   65 LQTLSKLLTNITSHPMEEKYRRVKKGNAAFQRRLGGLEKGHEVMLAVGFVEKSEEGEDYYVMEASAEAWPALVKNAEVVKGEVEVVKRRVEGAGSAPTPQPA--------VGTMAPP--MGAGGFGGSXXXXSGMGGGGLPQNIPPGMQDAVANMMSNPEALRGM 219          
BLAST of mRNA_Ecto-sp6_S_contig11.1276.1 vs. uniprot
Match: A0A1Z5JL72_FISSO (Ubiquitin-like domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JL72_FISSO)

HSP 1 Score: 67.0 bits (162), Expect = 6.080e-8
Identity = 68/207 (32.85%), Postives = 108/207 (52.17%), Query Frame = 2
Query:  254 SLEGTVGELKGAIRSQFDVEPKRIIFQGRILNKDDQTL--QDCKLKDGLTV-VVQVLAPGASXXXXXXXXXXXXXXXXXXXPATXXXXAGLAAATQSMSGLXXXAVSSSPVGQAVATVARQPAGVARE----CLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGF-VEHGDAQESWLLAPSEAAWNVLTA 850
            S+  T    + A  ++  +E  ++IF+GR+++ +D  L   + KL+DG  +  +   AP AS       XXXXXXXXX    +     + L+      + +   A ++ P+  A+AT+    AG+++      + TL K++ NI   P EEKYR +K++NA F RK+G   GG+  M+A GF VE  +  E + L  S  AW  L A
Sbjct:   26 SVTSTQLRQQAAEATKIPIESLKLIFRGRLISNNDTQLAVSEFKLEDGSVLHCMGKPAPAASSAEGGVSXXXXXXXXXLASASAAQPASRLSFNAFPSASVSAPAPTADPLQAALATLR---AGLSQADYLTAVQTLEKILSNIVTQPMEEKYRSLKKSNAAFQRKLGGKRGGDELMKAAGFIVEIREGVEYYALQASAEAWPKLVA 229          
BLAST of mRNA_Ecto-sp6_S_contig11.1276.1 vs. uniprot
Match: A0A7S3VBJ8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VBJ8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 9.110e-8
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 2
Query:  632 LTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQR 871
            +TTL K++ NI   P EEKYRK+KRANA F +++G + G    M  LGF  +   Q  ++L PS  AW  L  G+ ++ R
Sbjct:   46 ITTLQKILGNIVTKPQEEKYRKVKRANAAFQKRLGRLNGAHDVMTMLGFSVND--QNEYVLVPSPEAWPKLVEGKKEVDR 123          
BLAST of mRNA_Ecto-sp6_S_contig11.1276.1 vs. uniprot
Match: A0A7S4EG88_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG88_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.100e-7
Identity = 37/80 (46.25%), Postives = 48/80 (60.00%), Query Frame = 2
Query:  608 PAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGF-VEHGDAQESWLLAPSEAAWNVL 844
            P  V    + TL KV+ NI A+P EEKYR++KR N  F +++G + GG ACM A GF VE   A+E + L  S   WN L
Sbjct:  196 PPSVYATAVATLEKVLTNIVANPMEEKYRRVKRQNPAFRKRLGGLGGGHACMLACGFTVEQQAAEEVYQLRASADRWNNL 275          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LAX4_ECTSI1.590e-21492.81Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
A0A7S2SMK3_9STRA1.590e-1833.77Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2SNT8_9STRA2.140e-1733.77Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CLK8_9STRA1.070e-1530.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A448ZQX1_9STRA3.920e-1228.74Ubiquitin-like domain-containing protein n=1 Tax=P... [more]
A0A7S2EXK5_TRICV1.360e-946.15Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2IH61_9STRA2.590e-934.55Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A1Z5JL72_FISSO6.080e-832.85Ubiquitin-like domain-containing protein n=1 Tax=F... [more]
A0A7S3VBJ8_9STRA9.110e-842.50Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S4EG88_9STRA1.100e-746.25Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig11contigEcto-sp6_S_contig11:943671..947431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score628.6
Seed ortholog evalue2.2e-177
Seed eggNOG ortholog2880.D8LAX4
Model size2494
KEGG koko:K04523
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0016043,GO:0019538,GO:0019941,GO:0022402,GO:0022607,GO:0030163,GO:0030433,GO:0030474,GO:0030674,GO:0031023,GO:0032446,GO:0033554,GO:0034976,GO:0036211,GO:0036503,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051300,GO:0051603,GO:0051716,GO:0060090,GO:0070647,GO:0071704,GO:0071840,GO:1901564,GO:1901565,GO:1901575,GO:1901698
Exons4
EggNOG free text desc.ubiquitin
EggNOG OGsCOG5272@1,KOG0010@2759
Ec32 ortholog descriptionPUG domain
Ec32 orthologEc-27_006090.1
Cds size1371
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03051,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig11.1276.1prot_Ecto-sp6_S_contig11.1276.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig11 944640..947277 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348781.8974178-UTR-Ecto-sp6_S_contig11:943670..9446391682348781.8974178-UTR-Ecto-sp6_S_contig11:943670..944639Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig11 943671..944639 -
1682348781.9445832-UTR-Ecto-sp6_S_contig11:947277..9474311682348781.9445832-UTR-Ecto-sp6_S_contig11:947277..947431Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig11 947278..947431 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348781.9069278-CDS-Ecto-sp6_S_contig11:944639..9450351682348781.9069278-CDS-Ecto-sp6_S_contig11:944639..945035Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 944640..945035 -
1682348781.91465-CDS-Ecto-sp6_S_contig11:945263..9456621682348781.91465-CDS-Ecto-sp6_S_contig11:945263..945662Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 945264..945662 -
1682348781.9225125-CDS-Ecto-sp6_S_contig11:945953..9463891682348781.9225125-CDS-Ecto-sp6_S_contig11:945953..946389Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 945954..946389 -
1682348781.9342763-CDS-Ecto-sp6_S_contig11:947137..9472771682348781.9342763-CDS-Ecto-sp6_S_contig11:947137..947277Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 947138..947277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig11.1276.1

>prot_Ecto-sp6_S_contig11.1276.1 ID=prot_Ecto-sp6_S_contig11.1276.1|Name=mRNA_Ecto-sp6_S_contig11.1276.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=457bp
MAEGADAVSAASATATIGVKFTSSDKAAGQVSVSLEGTVGELKGAIRSQF
DVEPKRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASASPSPAAA
TAPAAAAAAASPATPNPAAGLAAATQSMSGLGLGAVSSSPVGQAVATVAR
QPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGE
ACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAA
AGASAGGFAGGLGVLPPPGAFPQAGFGGGMGGGGMPDMATMARMAQNPAV
MQGMMNDPSVQAMMRSNPQMAAAMQSVMARPGGLAQAFEAIQNNPAMSQM
AQQMMQDPTALQRAAQMDFGGALSAGINAAPPNAAQGFQAPPAGGQGGTP
AAPSPAAGAAPSLPPAAAPTAAVPPASEGGGEAGEEGKEMTEDELIAEAI
RKSMED*
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mRNA from alignment at Ecto-sp6_S_contig11:943671..947431-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig11.1276.1 ID=mRNA_Ecto-sp6_S_contig11.1276.1|Name=mRNA_Ecto-sp6_S_contig11.1276.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3761bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:943671..947431- (Ectocarpus species6 EcLAC_371)
CGAGCCTGGGCAAAGGCCTTCTATCGACGTCCATCAAACACGTGCCTAGG TTCAAAACTCTAACAGCGCGAGTTGAGTTTTCCTCGACTGCAAGATATTC CCTTTGCAGTATCCCAGCACTGCGTTTGCCGGTAAACAGCAGTCTAGAAC AACAATGGCGGAGGGAGCAGATGCGGTGTCAGCGGCATCAGCTACGGCAA CCATCGGGGTGAAATTCACGTCTTCGGACAAAGCTGCTGGGCAGGTTTCG GTATCTCTAGAGGGCACAGTTGGCGAGCTTAAGGGAGCTATCAGGTACGG CTTAAGCCTCTCGGCTCACAAGATAGAAATGCAATACTGTAACGTATGCA TAGCGGGGAGTAGAAGTGCAGTACAGGGTGCCCACGTGCCCCCTTCTCGA AGGTTCGCCCAGCATCTGCATGTACTGCTGTAGCGCAAGGCGGGTATCGC GTGACACAGATAGAATACTCAACTGGTGTCATGATCTGAATAGTGGCGGG TGCACGGTATGCAGCCTGCTGCCAAGTTCCTCGGCAATACTTTCCCACTT GCTCGTGCTGTGTACAATAAAACTGCTCGAATCTCTGCGTAGACCCAGTT TGAGACGAGCCATTTCCTCGTGTTTTAGTACAGACGTGCAGGGCTACGAG GGAGGCATCCCACAGAGTGAGTGCGTGTTTGGCACAAGCACTATTGTAGT CGTAGGGGCATCTACGACTGGAAGTTTGCAGCGGTGTCTTTTGGTAGTCG GTTTTGCCAAGAGGCAACTAGTGTACTCTCGTCTTTCCCGTGCCTTTCCC ACGGCATATTGTACACCCGCTGGGTACTCTCCGAGAGCTTATGTACAAGC AAAGACGTCCATTCACGTCTGCTTTTTACTCAACACGCGTCGTATTCAAG ACGAACTGGACAACATAAAACTACCCAGCGTTCGTAAGCATATGAATCGT GGCAAGCAACCAGAAAACACTGATTTGATCGATACGCCTCGTCCGGATGA GAAACCTCCTCTTGGCCTCTCGCCCGTCCGCCGACCCCACAGGTCGCAGT TCGACGTCGAGCCGAAGCGCATCATCTTCCAGGGGCGCATCCTCAACAAG GACGACCAGACCCTCCAAGATTGCAAGCTTAAGGATGGCCTTACCGTGGT TGTCCAAGTGTTAGCGCCTGGGGCATCAGCCTCGCCGTCGCCTGCCGCAG CGACGGCGCCTGCCGCCGCCGCAGCGGCGGCGTCCCCTGCCACGCCGAAT CCCGCAGCCGGCCTTGCGGCCGCCACGCAATCGATGAGCGGGTTGGGTTT AGGCGCGGTTAGCAGCAGCCCGGTGGGGCAGGCGGTGGCAACGGTGGCTC GGCAGCCCGCGGGCGTGGCGCGCGAGTGCCTAACGACTCTTACCAAGGTG ATCGACAACATCAAGGCACACCCGACCGAGGAGAAGTACCGCAAGATCAA GAGAGCAAACGCGGGGTTCAGCCGGAAGGTGGGGTGGGGGCGCGCGGTCT CAAGCGTTATCTTACGTTTCGTGTGGAGATGCTGCCGTGCCGGTTGGGCG CACGTGATCGTTGGTTTGCTGTGTTGGGTATTGATGTAATAGTACGTCCG CATCACCACCGTTTGGCGTGTTTTGCTTCTGGACTTGGACGAGGCGCTTC CGACGACTTTGCGGGGAGTCAACCGCGTCTCTTTTCACCGTCGCCATGCT GCTCAGCGATCGTAAATCACCTTTCCCGTTGCATGCAACGCCCCTCTCCT CTCCGCACGTTATTTACAGGTTGGAGCGGTGCCGGGCGGGGAGGCCTGCA TGCGAGCCCTCGGATTCGTCGAGCACGGGGACGCGCAAGAGAGCTGGCTC CTTGCCCCCAGCGAAGCGGCCTGGAACGTTCTTACCGCCGGCCGCGTAGA CATCCAGAGAGCTCTGGCGACCCTCCCGGGAGCGCCGGCGGCTGCTGGTG CGTCCGCCGGCGGCTTCGCGGGGGGGTTGGGGGTGCTCCCTCCCCCCGGG GCGTTTCCCCAGGCCGGGTTCGGGGGCGGAATGGGGGGAGGGGGGATGCC GGACATGGCGACGATGGCGAGGATGGCACAGAACCCGGCGGTGATGCAGG GTATGATGAACGACCCTTCGGTGCAGGCCATGATGAGGAGTAACCCGCAG ATGGCGGCGGCGATGCAGGTGTGTTTTTATGGGTGTGATGTTTTCAGCAA GGATGGGGGTCGTGTATGTATGTAGCAGGTCACGGCTTTTGGCAACATCC GGGTATTTGCTAGATTCGCTTCCTGCTAATGCTGCACCCCTGTGTTGGTC TCGCGCTTGTTTGTTTTTTTTGCCTCTACTGCATGTAATCTTCACGCTCC GAAACCTCTTGTCCGTTCGTCCCTTCGCCCGCTACACTCTCCGCAGTCCG TGATGGCCCGACCGGGCGGACTGGCTCAGGCGTTCGAAGCGATTCAAAAC AACCCGGCGATGTCTCAGATGGCCCAGCAGATGATGCAGGACCCTACCGC TCTTCAGCGAGCCGCCCAGATGGATTTCGGAGGCGCCCTCTCGGCGGGAA TAAACGCCGCACCACCCAACGCCGCACAGGGTTTCCAAGCACCCCCTGCA GGCGGACAGGGGGGGACTCCCGCGGCACCATCCCCTGCTGCTGGTGCTGC TCCCTCGCTACCACCTGCAGCAGCACCAACGGCGGCGGTGCCCCCGGCCT CCGAAGGGGGCGGGGAAGCGGGGGAGGAGGGAAAGGAGATGACGGAAGAC GAGCTGATTGCGGAGGCGATTCGAAAATCTATGGAGGACTAGCTGCTTTT TCCTCGTTCCGCTGGTTTCCGACGAGTTGATTTTCGCGTGGTTCGGCGTC AGGTCTTGCTTTTCGCTTCCCTGCAACACGACATTGTTTCGATGTCTTTT TAGGAGGGAGAGGGGGGATATTGCTGTGCGTCTGTGTATATAAGCTGTAA ATGAATGCACGTTCCTGGCCCTGCATGCTTTGTTTTCCCGGATGCGGGAA GGCGGGATGGATACCCTCGTATTATACGGTACCACCTCGATAGGCCACGT CGGCCTTCCAAAGTACGTAAAGGCGAGGCTTACGCTGCGCTTGCAGCATG ACGCGCGTTTTGCTCGTCGGTGCTTAGGCGGAAGGCATTCTTGGTTGTGC TGATAGGTGCTGGGTTTGACCGTAGTGAGGGTCAGACAACAGAGGTGTTT GATATGACCAGCAATCTGGAGGAAGGACATAATGAACAATTTGGCACGTC GGTCTTGCACGACATCTATGTACTGCAGTTGAGGTCCCTATTTAGTGCCG GTTGAATAGCCAGTGTTTTCGGGGGACGCACAATAAATGTCAAGAGTTGT TCTTCAATTACTTGAAATCGTGTCGGTCATTTTCTGGGCACATGCGGGCA CTAAATAGGGACCTCCGCTTGCATTCTTTTCGTCCCACGGTCTGCTTCCG CCGTACATCCCCCAAGGCGCTGTTAGGACTGTTAGGAGTACAAATACAAC TGAAGTGCAGAAGTGAGTTTTGGCTTCTGTCGAAAATTACTACAGCGAGC TCTCTGTAGTTTCAATCCGTATCACTCTTCTTTTTAGTGCTTCGAGGTTA GGCTTGCGAGCTGAAGTAGTGGCAGCACGCGCGGGTGTGTATGTTATTTC CCAATTTCTTGCTCTCTCGCCGTCCTTTTTAGTTTCGCAAGCCTGCACCA CACAGTTGGCTACGGTACGCGACGAATCCTGCCCTGAGTAGCCCCGGGAA ATCGATCCTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig11:943671..947431-

>mRNA_Ecto-sp6_S_contig11.1276.1 ID=mRNA_Ecto-sp6_S_contig11.1276.1|Name=mRNA_Ecto-sp6_S_contig11.1276.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1371bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:943671..947431- (Ectocarpus species6 EcLAC_371)
ATGGCGGAGGGAGCAGATGCGGTGTCAGCGGCATCAGCTACGGCAACCAT
CGGGGTGAAATTCACGTCTTCGGACAAAGCTGCTGGGCAGGTTTCGGTAT
CTCTAGAGGGCACAGTTGGCGAGCTTAAGGGAGCTATCAGGTCGCAGTTC
GACGTCGAGCCGAAGCGCATCATCTTCCAGGGGCGCATCCTCAACAAGGA
CGACCAGACCCTCCAAGATTGCAAGCTTAAGGATGGCCTTACCGTGGTTG
TCCAAGTGTTAGCGCCTGGGGCATCAGCCTCGCCGTCGCCTGCCGCAGCG
ACGGCGCCTGCCGCCGCCGCAGCGGCGGCGTCCCCTGCCACGCCGAATCC
CGCAGCCGGCCTTGCGGCCGCCACGCAATCGATGAGCGGGTTGGGTTTAG
GCGCGGTTAGCAGCAGCCCGGTGGGGCAGGCGGTGGCAACGGTGGCTCGG
CAGCCCGCGGGCGTGGCGCGCGAGTGCCTAACGACTCTTACCAAGGTGAT
CGACAACATCAAGGCACACCCGACCGAGGAGAAGTACCGCAAGATCAAGA
GAGCAAACGCGGGGTTCAGCCGGAAGGTTGGAGCGGTGCCGGGCGGGGAG
GCCTGCATGCGAGCCCTCGGATTCGTCGAGCACGGGGACGCGCAAGAGAG
CTGGCTCCTTGCCCCCAGCGAAGCGGCCTGGAACGTTCTTACCGCCGGCC
GCGTAGACATCCAGAGAGCTCTGGCGACCCTCCCGGGAGCGCCGGCGGCT
GCTGGTGCGTCCGCCGGCGGCTTCGCGGGGGGGTTGGGGGTGCTCCCTCC
CCCCGGGGCGTTTCCCCAGGCCGGGTTCGGGGGCGGAATGGGGGGAGGGG
GGATGCCGGACATGGCGACGATGGCGAGGATGGCACAGAACCCGGCGGTG
ATGCAGGGTATGATGAACGACCCTTCGGTGCAGGCCATGATGAGGAGTAA
CCCGCAGATGGCGGCGGCGATGCAGTCCGTGATGGCCCGACCGGGCGGAC
TGGCTCAGGCGTTCGAAGCGATTCAAAACAACCCGGCGATGTCTCAGATG
GCCCAGCAGATGATGCAGGACCCTACCGCTCTTCAGCGAGCCGCCCAGAT
GGATTTCGGAGGCGCCCTCTCGGCGGGAATAAACGCCGCACCACCCAACG
CCGCACAGGGTTTCCAAGCACCCCCTGCAGGCGGACAGGGGGGGACTCCC
GCGGCACCATCCCCTGCTGCTGGTGCTGCTCCCTCGCTACCACCTGCAGC
AGCACCAACGGCGGCGGTGCCCCCGGCCTCCGAAGGGGGCGGGGAAGCGG
GGGAGGAGGGAAAGGAGATGACGGAAGACGAGCTGATTGCGGAGGCGATT
CGAAAATCTATGGAGGACTAG
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