Homology
BLAST of mRNA_Ecto-sp6_S_contig103.903.1 vs. uniprot
Match: A0A6H5LER2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LER2_9PHAE) HSP 1 Score: 425 bits (1092), Expect = 1.900e-141 Identity = 338/441 (76.64%), Postives = 345/441 (78.23%), Query Frame = 1 Query: 1 ERPHKRRGKAGTPANPAAVTLSPKAMRRDSFAASPAAXXXXXXXXXXXXXXXXXXXX-----------VSAGDAGLGFPSSPPVPKTLAERLELVKGEEAELLREFEETHKRIAQEEEAKREEMAEFQRAGEAALRXXXXXXXXXXXRISAERKCKAAERQELLHKRLKEFEAEEAEFRIEVRERDARLEAEKEQLAKDSSVADAAVAAGGGDTPGIDGTGGDVTGAGDGPEWASDKWILAGMNSGGXXXXDKLPVAERPPVYVRDEKASAKAAAVARLLAGGVADASGASGGGEPLDKEEGTGPASAQASPTSEKASGVSKGAEAQGDVAVPTAMVEDGDETPPXXXXXDLGDGPAEASXXXXXXXXXXXXXXXXXXXXXXDP--ALAAVPAADDRGSGAKEPKGDRGANGGVVSPADAXXXXX---AVTAAEPPSVAAL 1275
ERPHKRRGKAGTPANPAAVTLSPKAMRRDSFAASPAAXXXXXXXXXXXXXXXXXXXX VS GDAGLG S PPVP T+AERLELVKGEEAELLREFEETHKRIAQEEEAKR+EMA FQRAGEAALR RISAERKCKAAER+ELLH+R KEFEAEE E RIE RERDARLEAEKEQLAKDSSVA PEWASDKWILAGMN GG KLPVAERPPVYVRD+KA AKAAAVARLLAGGV DASGASGG EPLDKEEGT PASA+ASP SEKASGVSKGAEAQ DVAVPTAMVEDGDETP XXXXX XXXXXXXXXXXXXXXXXXXXXX ALAAVPAADD+ SGAKEPKGDR ANGGVVSPA AXXXX AV EPPSVAAL
Sbjct: 145 ERPHKRRGKAGTPANPAAVTLSPKAMRRDSFAASPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSDGDAGLGVTSPPPVPTTVAERLELVKGEEAELLREFEETHKRIAQEEEAKRQEMARFQRAGEAALRAMQKEKEEALQRISAERKCKAAERKELLHQRFKEFEAEETELRIEARERDARLEAEKEQLAKDSSVAXXXX------XXXXXXXXXXXXXXXXXPEWASDKWILAGMNGGGGGGSAKLPVAERPPVYVRDQKADAKAAAVARLLAGGVVDASGASGGSEPLDKEEGTEPASAEASPMSEKASGVSKGAEAQEDVAVPTAMVEDGDETPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAAVPAADDQCSGAKEPKGDRRANGGVVSPAAAXXXXDXXXAVDTVEPPSVAAL 579
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 0 |
| Model size | 1278 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-23_001490.1 |
| Cds size | 1278 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682348741.3259048-CDS-Ecto-sp6_S_contig103:218918..219722 | 1682348741.3259048-CDS-Ecto-sp6_S_contig103:218918..219722 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig103 218919..219722 - |
| 1682348741.3376138-CDS-Ecto-sp6_S_contig103:220307..220385 | 1682348741.3376138-CDS-Ecto-sp6_S_contig103:220307..220385 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig103 220308..220385 - |
| 1682348741.3554773-CDS-Ecto-sp6_S_contig103:220832..220916 | 1682348741.3554773-CDS-Ecto-sp6_S_contig103:220832..220916 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig103 220833..220916 - |
| 1682348741.3666475-CDS-Ecto-sp6_S_contig103:223023..223263 | 1682348741.3666475-CDS-Ecto-sp6_S_contig103:223023..223263 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig103 223024..223263 - |
| 1682348741.3760412-CDS-Ecto-sp6_S_contig103:223749..223821 | 1682348741.3760412-CDS-Ecto-sp6_S_contig103:223749..223821 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig103 223750..223821 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig103.903.1 >prot_Ecto-sp6_S_contig103.903.1 ID=prot_Ecto-sp6_S_contig103.903.1|Name=mRNA_Ecto-sp6_S_contig103.903.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=426bp
ERPHKRRGKAGTPANPAAVTLSPKAMRRDSFAASPAAAACEYDDEEDEEE
EDEAMMMVSAGDAGLGFPSSPPVPKTLAERLELVKGEEAELLREFEETHK
RIAQEEEAKREEMAEFQRAGEAALRAMQKEKEEALRRISAERKCKAAERQ
ELLHKRLKEFEAEEAEFRIEVRERDARLEAEKEQLAKDSSVADAAVAAGG
GDTPGIDGTGGDVTGAGDGPEWASDKWILAGMNSGGGGGGDKLPVAERPP
VYVRDEKASAKAAAVARLLAGGVADASGASGGGEPLDKEEGTGPASAQAS
PTSEKASGVSKGAEAQGDVAVPTAMVEDGDETPPPPPESDLGDGPAEASG
DADGGGVVVPNDTDPEEEEEEDPALAAVPAADDRGSGAKEPKGDRGANGG
VVSPADADADADAVTAAEPPSVAAL* back to topmRNA from alignment at Ecto-sp6_S_contig103:218919..223821- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig103.903.1 ID=mRNA_Ecto-sp6_S_contig103.903.1|Name=mRNA_Ecto-sp6_S_contig103.903.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4903bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:218919..223821- (Ectocarpus species6 EcLAC_371)
GAGCGGCCGCACAAGCGACGCGGCAAGGCCGGCACCCCGGCGAACCCTGC
GGCGGTTACACTTTCCCCGAAGGTAAGGGTTGCTGCTGCTGCTGCTGCTA
TTACTGCTTGTTTGTGTGGGGATACTCGTGCGTTCAATTCGTCTGTTTCT
GGCGGAAGGGAACAGAGTGCTACGTTAGGGGGGGGTGGCATGTTCAGTTT
CGTTGGTGGGCGGGAATTATTGCACCATAGTCACGCTTCAGCGGCCGCTA
CGTGGCCTCTTTCGAGATCTGCAGAGCATTTGTTATGTGCGTCGACGTCG
ATGGCACGATGTGTGCACTACGTAATTTTTTAGATTTATGAGCCCGGCTG
AAGCCCCATGGTGGCCAGGGGGCACAGCTGATACGAAGGGGCGGTGGTAG
CAAGAGAATAAAAGAAACTTACGTACTTTGCGCAAAAAAAGGATAATTGT
ACACAACATGGTGAACTCTCTTCCTGTTGTTCTGCCTGTGGCATGATCAC
GGAAACAAAAAAACACACACACACACCCCACGCTTCTGCTGCTGCTGCTG
CCTCGCAGGCGATGCGGCGAGACTCCTTCGCCGCATCTCCCGCCGCCGCC
GCCTGCGAGTACGACGACGAGGAGGACGAGGAGGAGGAAGACGAGGCGAT
GATGATGGTTTCCGCCGGGGACGCTGGGCTTGGCTTCCCCTCCTCGCCGC
CCGTTCCCAAGACCCTTGCGGAGAGGCTGGAGTTGGTCAAGGGCGAGGAG
GCCGAGCTGCTGCGGGAGTTCGAGGAGACCCACAAGCGGATCGCCCAGGT
CGGTAATCCTTTTAGGACTGATTGCCTACGCAAAGAATGTCTCTCAGTTT
TTTTAGGAAGGAAGATCAGGCAGGTGGCACGCAGACGATAATTCCTGACC
CACACTTCGCCGATTCTATTATTTATCCAGTATGTTTGGTTACCTGCGTA
GACTGCTGAATCTCAAGAACCTCTTGTCGTTGGCATTGACTAAGCACGTG
TCTGCCAACGAGGAGCACATTTTGGGCGAGGCTGGTGTTCTTCAATAGTT
CCTCTTGTGGGCCACGAGAGGCCGCCATGTAGTGTAGGGGTTATTCACCG
GCCTCTCGCAAACCGTGTTCAAGTTCTTGTGTTTGATACGATGCTCTGAG
CAATCAATCTCTTAACTGCCAAGCTCTTAACTGCCAAGTTCTTAACTGCC
ATGTTCTTAACTGCCAAGCTCTTAACTGCCAAGCTCTTAACTGCCAAGCT
CTTAACTGCCGAGCTCTTAACTGCCATGTTCTTAACTGCCAAGTTCTTAA
CTGCCAAGCTCTTAACTGCCAAGTTCTTAACTGCCAAGCTCTTAACTGCC
AAGCTCTTAACTGCCAAGCTCTTAACTGCCATGTTTTAAATGCCATGTTC
TTAACTGCCAAGCTCTTAACTGCCAAGCTCTTAACTGCCATGTTCTTAAC
TGCCAAGTTCTTAGACCCATCAAGCTCTTAACTCCCATGTTTTTAATTGC
CAAGCTCTCAACTGCTAAGTTCTTAACTGCCAAGCTCTTAACTGCCAAGT
TCTTAGACCCATCTTTATGGGGAACAAATCTTCCTTTGGGCAAATGTTGC
CTTTTTCGACCTTTTGGGCAGCCTGCTACGCGAACGAATGAAAATCAGCT
GTTCAACCCTCGAGAAAAGTCACAGCTTTGGTTGAGATGTCCACAGATCA
CCTATTTGTTTCGCCAGGGTCCACGTCTGATTTTTTTCCAGCAGAGCAAG
ATTTGCAAATTCGTCCAAGATTGGGCCGAATAGCCAACTCCGAGCAAATC
TTGGGTCAAGATTTGCCAAAATTTGAAAAAATGCTGGTTTTGAAGGGATC
TTGCGTGAAAGTTGCACATTTTGAAAAAATCAAACGGGGACCCTTGCGAA
ACAAATAGGCAATCTGTAGACATCTCAGCCAAAGCTATGACTCTTCTCGA
AGATGGAACAGCTGATTCGCATTTGCTCGGAAGCAGACTGCCCAAAAGGC
CGAAAAGACAAGATTTTCCCAAAACAAGATTTTGTTCCCATAAATCGGGG
TCTTAGCTGCCAAGTTCTTCACTGCCAAGTTCTCAACTGCCAAGTCTTGG
AAGTGCGGGCGCTATGTGTAGTTGGGTGTCTTTTTGGGTGGGATGGCCCT
CCGAGTAGCCTGGTCGAATATGCTGTTTTCGTTCTTTCAAGCGTTCTTCG
TGGAGTTTATTTTCGTTCGATTGTGTACAACGGCGATTGTGTTGATTTTT
CTAGCTCCTTTTCCCCCGTGCTCTCCTTGTGCTTCGTAGCGTGTATGGTA
CCCTGGTTGGGCAAATAGTAGTCCTGAGTATTGTCGAGAGGACGGAGTAT
TGTTCCTGCAGGACCAATCACCGATGGCGAATCTTCCCTCCCGACGTTGC
CAAAGGTGGCTCGAAAGTGTTTTCCATGTGCTCCCGTGGTGGGGGGCGAT
CAGTTTTATCGGCGGGAACGGTTGCTACAAGCGCGAGGATACGGGAGGCG
TTATCATCGGCACGATGACGAAACTTCCTGCCGTGTCGCCCGTATGCTGC
CCAGTAACTCTGACGGTGGATGTAGGCTTTCCCGTCATGACCCTGACGCC
TGCGGCCACGAGTTGCACGCTGCTTTCCGCGCTTTCGACGCCACCTTCCC
CCAAAGCAGGACGTGTGACAGAAAGAAACGCATGAATACCGGAGCTCATT
TCCACGTTTTTTGACAGAAGCGCATCGGCATCGGACTCGTTTCCACCATT
TTTGACAGAAGCACATCAATACCGGAGCTCACTTTCCAAGGTTTTGACAG
AAGCGCATCAATACAGGAGCTCGTTTCCACGGTTTTGGGCAGAAGCGCAT
CAGTACCGGAGCTCAGTTTCGCCGCTTTTGCGGTTGTGTTTTTCGTTTGT
TCCAGGAGGAGGAGGCGAAGCGTGAGGAGATGGCGGAGTTCCAGCGAGCC
GGTGAGGCCGCCCTGCGCGCGATGCAGAAGGAGAAGGAGGTAAGTCCCAC
AAGCAATCCGCGGTGCCCCCCCCCGCCTTTTGGCCCTTCTTTCTGTCTCC
GAATCAGCGCTCTCGTGTGTTAACCGCGTTGTTTTCAAGCTACGGGGGAG
GCACGAGCGGCCGTTGCCTGTATGTTCGACGCGTCTCATGGTGCATGGTT
TTTGGCGACAGGCTTGTGTCTTTTCTCTGTGTGAATTCTGCGACAAACAG
CAGCAGCATCGGCAGCAGCAGCAGATGCGCCAGCGGGGCTGACCTTGTTT
GGGCGCGGGGGGAAGGTTCGTTGCCTGTTGGCATTTGGCGCTTGCTCATA
CTTTCTGCCAACCCTGTCAAAGAATCAGATGCCGCATATCGTTGTGTCTG
TTCGTGTTGTTCTCTACCAAGACAAGTCTAACCGTAAAACAACACCTACC
TCAATTCGCCATATGCCCTGTTCATTCGCGCTGCAGGAAGCTTTACGCCG
CATTTCGGCGGAGCGCAAGTGCAAGGCGGCGGAGCGTCAAGAGCTGTTGC
ACAAGCGCTTGAAGGTAGCCGGTATTGCTCCTTTCTTTGCCTCGCCCTAG
TTCCTCTCTCCCTCTCTTTCTCTCTACGTTTTAGAACCGTCCTGATCTCT
ACCGCAAGCACCTCCTCATTATCCCTTCGGGTTGCGGACCCTTATTTCCG
AAATTTCAATAGAGAACACCGATGCTACCACAAGTTTCTAATGCATTCGT
GCGCACGAACAGCGGCAATCTTTTCCCGGGGTACTCAATCCCCTTGGTAT
GCTCACGGACACAATAGGTTACACCACGAAGAGTAGATTTTTCGCGTAAG
TCGTGTTCGGCAGGACTTGGAGGCCGGTGTGTGTTCGTACACGCATTCAG
CTACGTTTTTGCCTGGGGTACATGCAACATGTCAACCCCTATGGTACACT
CATGGAAACAAAAGAACAGTTTGGTCATCATACAACACTATCATGTACTT
ATCATTGCTAATCTATCCCGGACTGTTATCTGCGGAAGAGCTGGATTCGT
TGTGTTTTTGTGAAGATAGTAGATCAAGTCTTGTCTACAGAGAATCGACA
TTTTTATTTCTTTTTGCATGCACGCGAACGAAACGTTTGTTTTCGCCAGG
AGTTCGAGGCCGAGGAGGCTGAGTTCCGGATCGAGGTGAGGGAGAGAGAC
GCCCGCCTGGAGGCCGAGAAGGAGCAGCTCGCGAAGGACTCCTCCGTGGC
AGACGCCGCGGTCGCCGCCGGCGGCGGCGACACGCCCGGCATCGACGGCA
CCGGAGGTGACGTCACCGGAGCCGGTGACGGTCCGGAGTGGGCGTCGGAC
AAGTGGATCCTTGCCGGGATGAACAGCGGCGGCGGCGGCGGCGGTGACAA
GCTTCCCGTCGCGGAGAGACCGCCGGTCTACGTGAGGGACGAGAAGGCCA
GCGCGAAGGCGGCGGCGGTTGCCAGGCTTCTGGCGGGCGGCGTGGCGGAC
GCGAGCGGCGCCTCCGGTGGCGGCGAACCGTTGGACAAGGAGGAGGGGAC
AGGGCCTGCGAGCGCACAGGCGTCGCCAACGTCGGAGAAGGCCTCGGGGG
TGTCCAAGGGTGCCGAGGCGCAGGGGGACGTGGCGGTTCCGACGGCCATG
GTCGAAGACGGAGACGAAACACCGCCGCCGCCGCCGGAGTCGGATCTGGG
GGATGGCCCCGCCGAGGCTAGCGGAGATGCCGACGGCGGAGGCGTTGTCG
TTCCGAACGACACCGACCCGGAGGAGGAGGAGGAGGAGGACCCCGCTTTG
GCGGCCGTCCCTGCAGCCGACGACCGGGGCAGCGGCGCGAAAGAACCTAA
GGGCGACCGCGGAGCGAACGGCGGGGTCGTTTCTCCCGCTGATGCTGATG
CTGATGCTGATGCTGTTACTGCTGCCGAGCCGCCGAGCGTCGCGGCGCTG
TGA back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig103:218919..223821- >mRNA_Ecto-sp6_S_contig103.903.1 ID=mRNA_Ecto-sp6_S_contig103.903.1|Name=mRNA_Ecto-sp6_S_contig103.903.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1278bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:218919..223821- (Ectocarpus species6 EcLAC_371)
GAGCGGCCGCACAAGCGACGCGGCAAGGCCGGCACCCCGGCGAACCCTGC
GGCGGTTACACTTTCCCCGAAGGCGATGCGGCGAGACTCCTTCGCCGCAT
CTCCCGCCGCCGCCGCCTGCGAGTACGACGACGAGGAGGACGAGGAGGAG
GAAGACGAGGCGATGATGATGGTTTCCGCCGGGGACGCTGGGCTTGGCTT
CCCCTCCTCGCCGCCCGTTCCCAAGACCCTTGCGGAGAGGCTGGAGTTGG
TCAAGGGCGAGGAGGCCGAGCTGCTGCGGGAGTTCGAGGAGACCCACAAG
CGGATCGCCCAGGAGGAGGAGGCGAAGCGTGAGGAGATGGCGGAGTTCCA
GCGAGCCGGTGAGGCCGCCCTGCGCGCGATGCAGAAGGAGAAGGAGGAAG
CTTTACGCCGCATTTCGGCGGAGCGCAAGTGCAAGGCGGCGGAGCGTCAA
GAGCTGTTGCACAAGCGCTTGAAGGAGTTCGAGGCCGAGGAGGCTGAGTT
CCGGATCGAGGTGAGGGAGAGAGACGCCCGCCTGGAGGCCGAGAAGGAGC
AGCTCGCGAAGGACTCCTCCGTGGCAGACGCCGCGGTCGCCGCCGGCGGC
GGCGACACGCCCGGCATCGACGGCACCGGAGGTGACGTCACCGGAGCCGG
TGACGGTCCGGAGTGGGCGTCGGACAAGTGGATCCTTGCCGGGATGAACA
GCGGCGGCGGCGGCGGCGGTGACAAGCTTCCCGTCGCGGAGAGACCGCCG
GTCTACGTGAGGGACGAGAAGGCCAGCGCGAAGGCGGCGGCGGTTGCCAG
GCTTCTGGCGGGCGGCGTGGCGGACGCGAGCGGCGCCTCCGGTGGCGGCG
AACCGTTGGACAAGGAGGAGGGGACAGGGCCTGCGAGCGCACAGGCGTCG
CCAACGTCGGAGAAGGCCTCGGGGGTGTCCAAGGGTGCCGAGGCGCAGGG
GGACGTGGCGGTTCCGACGGCCATGGTCGAAGACGGAGACGAAACACCGC
CGCCGCCGCCGGAGTCGGATCTGGGGGATGGCCCCGCCGAGGCTAGCGGA
GATGCCGACGGCGGAGGCGTTGTCGTTCCGAACGACACCGACCCGGAGGA
GGAGGAGGAGGAGGACCCCGCTTTGGCGGCCGTCCCTGCAGCCGACGACC
GGGGCAGCGGCGCGAAAGAACCTAAGGGCGACCGCGGAGCGAACGGCGGG
GTCGTTTCTCCCGCTGATGCTGATGCTGATGCTGATGCTGTTACTGCTGC
CGAGCCGCCGAGCGTCGCGGCGCTGTGA back to top
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