mRNA_Ecto-sp6_S_contig103.903.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig103.903.1
Unique NamemRNA_Ecto-sp6_S_contig103.903.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig103.903.1 vs. uniprot
Match: A0A6H5LER2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LER2_9PHAE)

HSP 1 Score: 425 bits (1092), Expect = 1.900e-141
Identity = 338/441 (76.64%), Postives = 345/441 (78.23%), Query Frame = 1 
Query:    1 ERPHKRRGKAGTPANPAAVTLSPKAMRRDSFAASPAAXXXXXXXXXXXXXXXXXXXX-----------VSAGDAGLGFPSSPPVPKTLAERLELVKGEEAELLREFEETHKRIAQEEEAKREEMAEFQRAGEAALRXXXXXXXXXXXRISAERKCKAAERQELLHKRLKEFEAEEAEFRIEVRERDARLEAEKEQLAKDSSVADAAVAAGGGDTPGIDGTGGDVTGAGDGPEWASDKWILAGMNSGGXXXXDKLPVAERPPVYVRDEKASAKAAAVARLLAGGVADASGASGGGEPLDKEEGTGPASAQASPTSEKASGVSKGAEAQGDVAVPTAMVEDGDETPPXXXXXDLGDGPAEASXXXXXXXXXXXXXXXXXXXXXXDP--ALAAVPAADDRGSGAKEPKGDRGANGGVVSPADAXXXXX---AVTAAEPPSVAAL 1275
            ERPHKRRGKAGTPANPAAVTLSPKAMRRDSFAASPAAXXXXXXXXXXXXXXXXXXXX           VS GDAGLG  S PPVP T+AERLELVKGEEAELLREFEETHKRIAQEEEAKR+EMA FQRAGEAALR           RISAERKCKAAER+ELLH+R KEFEAEE E RIE RERDARLEAEKEQLAKDSSVA                           PEWASDKWILAGMN GG     KLPVAERPPVYVRD+KA AKAAAVARLLAGGV DASGASGG EPLDKEEGT PASA+ASP SEKASGVSKGAEAQ DVAVPTAMVEDGDETP XXXXX          XXXXXXXXXXXXXXXXXXXXXX    ALAAVPAADD+ SGAKEPKGDR ANGGVVSPA AXXXX    AV   EPPSVAAL
Sbjct:  145 ERPHKRRGKAGTPANPAAVTLSPKAMRRDSFAASPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSDGDAGLGVTSPPPVPTTVAERLELVKGEEAELLREFEETHKRIAQEEEAKRQEMARFQRAGEAALRAMQKEKEEALQRISAERKCKAAERKELLHQRFKEFEAEETELRIEARERDARLEAEKEQLAKDSSVAXXXX------XXXXXXXXXXXXXXXXXPEWASDKWILAGMNGGGGGGSAKLPVAERPPVYVRDQKADAKAAAVARLLAGGVVDASGASGGSEPLDKEEGTEPASAEASPMSEKASGVSKGAEAQEDVAVPTAMVEDGDETPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAAVPAADDQCSGAKEPKGDRRANGGVVSPAAAXXXXDXXXAVDTVEPPSVAAL 579
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LER2_9PHAE1.900e-14176.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig103contigEcto-sp6_S_contig103:218919..223821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1278
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-23_001490.1
Cds size1278
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348741.3259048-CDS-Ecto-sp6_S_contig103:218918..2197221682348741.3259048-CDS-Ecto-sp6_S_contig103:218918..219722Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 218919..219722 -
1682348741.3376138-CDS-Ecto-sp6_S_contig103:220307..2203851682348741.3376138-CDS-Ecto-sp6_S_contig103:220307..220385Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 220308..220385 -
1682348741.3554773-CDS-Ecto-sp6_S_contig103:220832..2209161682348741.3554773-CDS-Ecto-sp6_S_contig103:220832..220916Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 220833..220916 -
1682348741.3666475-CDS-Ecto-sp6_S_contig103:223023..2232631682348741.3666475-CDS-Ecto-sp6_S_contig103:223023..223263Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 223024..223263 -
1682348741.3760412-CDS-Ecto-sp6_S_contig103:223749..2238211682348741.3760412-CDS-Ecto-sp6_S_contig103:223749..223821Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 223750..223821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig103.903.1prot_Ecto-sp6_S_contig103.903.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig103 218919..223821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig103.903.1

>prot_Ecto-sp6_S_contig103.903.1 ID=prot_Ecto-sp6_S_contig103.903.1|Name=mRNA_Ecto-sp6_S_contig103.903.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=426bp
ERPHKRRGKAGTPANPAAVTLSPKAMRRDSFAASPAAAACEYDDEEDEEE
EDEAMMMVSAGDAGLGFPSSPPVPKTLAERLELVKGEEAELLREFEETHK
RIAQEEEAKREEMAEFQRAGEAALRAMQKEKEEALRRISAERKCKAAERQ
ELLHKRLKEFEAEEAEFRIEVRERDARLEAEKEQLAKDSSVADAAVAAGG
GDTPGIDGTGGDVTGAGDGPEWASDKWILAGMNSGGGGGGDKLPVAERPP
VYVRDEKASAKAAAVARLLAGGVADASGASGGGEPLDKEEGTGPASAQAS
PTSEKASGVSKGAEAQGDVAVPTAMVEDGDETPPPPPESDLGDGPAEASG
DADGGGVVVPNDTDPEEEEEEDPALAAVPAADDRGSGAKEPKGDRGANGG
VVSPADADADADAVTAAEPPSVAAL*
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mRNA from alignment at Ecto-sp6_S_contig103:218919..223821-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.903.1 ID=mRNA_Ecto-sp6_S_contig103.903.1|Name=mRNA_Ecto-sp6_S_contig103.903.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4903bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:218919..223821- (Ectocarpus species6 EcLAC_371)
GAGCGGCCGCACAAGCGACGCGGCAAGGCCGGCACCCCGGCGAACCCTGC
GGCGGTTACACTTTCCCCGAAGGTAAGGGTTGCTGCTGCTGCTGCTGCTA
TTACTGCTTGTTTGTGTGGGGATACTCGTGCGTTCAATTCGTCTGTTTCT
GGCGGAAGGGAACAGAGTGCTACGTTAGGGGGGGGTGGCATGTTCAGTTT
CGTTGGTGGGCGGGAATTATTGCACCATAGTCACGCTTCAGCGGCCGCTA
CGTGGCCTCTTTCGAGATCTGCAGAGCATTTGTTATGTGCGTCGACGTCG
ATGGCACGATGTGTGCACTACGTAATTTTTTAGATTTATGAGCCCGGCTG
AAGCCCCATGGTGGCCAGGGGGCACAGCTGATACGAAGGGGCGGTGGTAG
CAAGAGAATAAAAGAAACTTACGTACTTTGCGCAAAAAAAGGATAATTGT
ACACAACATGGTGAACTCTCTTCCTGTTGTTCTGCCTGTGGCATGATCAC
GGAAACAAAAAAACACACACACACACCCCACGCTTCTGCTGCTGCTGCTG
CCTCGCAGGCGATGCGGCGAGACTCCTTCGCCGCATCTCCCGCCGCCGCC
GCCTGCGAGTACGACGACGAGGAGGACGAGGAGGAGGAAGACGAGGCGAT
GATGATGGTTTCCGCCGGGGACGCTGGGCTTGGCTTCCCCTCCTCGCCGC
CCGTTCCCAAGACCCTTGCGGAGAGGCTGGAGTTGGTCAAGGGCGAGGAG
GCCGAGCTGCTGCGGGAGTTCGAGGAGACCCACAAGCGGATCGCCCAGGT
CGGTAATCCTTTTAGGACTGATTGCCTACGCAAAGAATGTCTCTCAGTTT
TTTTAGGAAGGAAGATCAGGCAGGTGGCACGCAGACGATAATTCCTGACC
CACACTTCGCCGATTCTATTATTTATCCAGTATGTTTGGTTACCTGCGTA
GACTGCTGAATCTCAAGAACCTCTTGTCGTTGGCATTGACTAAGCACGTG
TCTGCCAACGAGGAGCACATTTTGGGCGAGGCTGGTGTTCTTCAATAGTT
CCTCTTGTGGGCCACGAGAGGCCGCCATGTAGTGTAGGGGTTATTCACCG
GCCTCTCGCAAACCGTGTTCAAGTTCTTGTGTTTGATACGATGCTCTGAG
CAATCAATCTCTTAACTGCCAAGCTCTTAACTGCCAAGTTCTTAACTGCC
ATGTTCTTAACTGCCAAGCTCTTAACTGCCAAGCTCTTAACTGCCAAGCT
CTTAACTGCCGAGCTCTTAACTGCCATGTTCTTAACTGCCAAGTTCTTAA
CTGCCAAGCTCTTAACTGCCAAGTTCTTAACTGCCAAGCTCTTAACTGCC
AAGCTCTTAACTGCCAAGCTCTTAACTGCCATGTTTTAAATGCCATGTTC
TTAACTGCCAAGCTCTTAACTGCCAAGCTCTTAACTGCCATGTTCTTAAC
TGCCAAGTTCTTAGACCCATCAAGCTCTTAACTCCCATGTTTTTAATTGC
CAAGCTCTCAACTGCTAAGTTCTTAACTGCCAAGCTCTTAACTGCCAAGT
TCTTAGACCCATCTTTATGGGGAACAAATCTTCCTTTGGGCAAATGTTGC
CTTTTTCGACCTTTTGGGCAGCCTGCTACGCGAACGAATGAAAATCAGCT
GTTCAACCCTCGAGAAAAGTCACAGCTTTGGTTGAGATGTCCACAGATCA
CCTATTTGTTTCGCCAGGGTCCACGTCTGATTTTTTTCCAGCAGAGCAAG
ATTTGCAAATTCGTCCAAGATTGGGCCGAATAGCCAACTCCGAGCAAATC
TTGGGTCAAGATTTGCCAAAATTTGAAAAAATGCTGGTTTTGAAGGGATC
TTGCGTGAAAGTTGCACATTTTGAAAAAATCAAACGGGGACCCTTGCGAA
ACAAATAGGCAATCTGTAGACATCTCAGCCAAAGCTATGACTCTTCTCGA
AGATGGAACAGCTGATTCGCATTTGCTCGGAAGCAGACTGCCCAAAAGGC
CGAAAAGACAAGATTTTCCCAAAACAAGATTTTGTTCCCATAAATCGGGG
TCTTAGCTGCCAAGTTCTTCACTGCCAAGTTCTCAACTGCCAAGTCTTGG
AAGTGCGGGCGCTATGTGTAGTTGGGTGTCTTTTTGGGTGGGATGGCCCT
CCGAGTAGCCTGGTCGAATATGCTGTTTTCGTTCTTTCAAGCGTTCTTCG
TGGAGTTTATTTTCGTTCGATTGTGTACAACGGCGATTGTGTTGATTTTT
CTAGCTCCTTTTCCCCCGTGCTCTCCTTGTGCTTCGTAGCGTGTATGGTA
CCCTGGTTGGGCAAATAGTAGTCCTGAGTATTGTCGAGAGGACGGAGTAT
TGTTCCTGCAGGACCAATCACCGATGGCGAATCTTCCCTCCCGACGTTGC
CAAAGGTGGCTCGAAAGTGTTTTCCATGTGCTCCCGTGGTGGGGGGCGAT
CAGTTTTATCGGCGGGAACGGTTGCTACAAGCGCGAGGATACGGGAGGCG
TTATCATCGGCACGATGACGAAACTTCCTGCCGTGTCGCCCGTATGCTGC
CCAGTAACTCTGACGGTGGATGTAGGCTTTCCCGTCATGACCCTGACGCC
TGCGGCCACGAGTTGCACGCTGCTTTCCGCGCTTTCGACGCCACCTTCCC
CCAAAGCAGGACGTGTGACAGAAAGAAACGCATGAATACCGGAGCTCATT
TCCACGTTTTTTGACAGAAGCGCATCGGCATCGGACTCGTTTCCACCATT
TTTGACAGAAGCACATCAATACCGGAGCTCACTTTCCAAGGTTTTGACAG
AAGCGCATCAATACAGGAGCTCGTTTCCACGGTTTTGGGCAGAAGCGCAT
CAGTACCGGAGCTCAGTTTCGCCGCTTTTGCGGTTGTGTTTTTCGTTTGT
TCCAGGAGGAGGAGGCGAAGCGTGAGGAGATGGCGGAGTTCCAGCGAGCC
GGTGAGGCCGCCCTGCGCGCGATGCAGAAGGAGAAGGAGGTAAGTCCCAC
AAGCAATCCGCGGTGCCCCCCCCCGCCTTTTGGCCCTTCTTTCTGTCTCC
GAATCAGCGCTCTCGTGTGTTAACCGCGTTGTTTTCAAGCTACGGGGGAG
GCACGAGCGGCCGTTGCCTGTATGTTCGACGCGTCTCATGGTGCATGGTT
TTTGGCGACAGGCTTGTGTCTTTTCTCTGTGTGAATTCTGCGACAAACAG
CAGCAGCATCGGCAGCAGCAGCAGATGCGCCAGCGGGGCTGACCTTGTTT
GGGCGCGGGGGGAAGGTTCGTTGCCTGTTGGCATTTGGCGCTTGCTCATA
CTTTCTGCCAACCCTGTCAAAGAATCAGATGCCGCATATCGTTGTGTCTG
TTCGTGTTGTTCTCTACCAAGACAAGTCTAACCGTAAAACAACACCTACC
TCAATTCGCCATATGCCCTGTTCATTCGCGCTGCAGGAAGCTTTACGCCG
CATTTCGGCGGAGCGCAAGTGCAAGGCGGCGGAGCGTCAAGAGCTGTTGC
ACAAGCGCTTGAAGGTAGCCGGTATTGCTCCTTTCTTTGCCTCGCCCTAG
TTCCTCTCTCCCTCTCTTTCTCTCTACGTTTTAGAACCGTCCTGATCTCT
ACCGCAAGCACCTCCTCATTATCCCTTCGGGTTGCGGACCCTTATTTCCG
AAATTTCAATAGAGAACACCGATGCTACCACAAGTTTCTAATGCATTCGT
GCGCACGAACAGCGGCAATCTTTTCCCGGGGTACTCAATCCCCTTGGTAT
GCTCACGGACACAATAGGTTACACCACGAAGAGTAGATTTTTCGCGTAAG
TCGTGTTCGGCAGGACTTGGAGGCCGGTGTGTGTTCGTACACGCATTCAG
CTACGTTTTTGCCTGGGGTACATGCAACATGTCAACCCCTATGGTACACT
CATGGAAACAAAAGAACAGTTTGGTCATCATACAACACTATCATGTACTT
ATCATTGCTAATCTATCCCGGACTGTTATCTGCGGAAGAGCTGGATTCGT
TGTGTTTTTGTGAAGATAGTAGATCAAGTCTTGTCTACAGAGAATCGACA
TTTTTATTTCTTTTTGCATGCACGCGAACGAAACGTTTGTTTTCGCCAGG
AGTTCGAGGCCGAGGAGGCTGAGTTCCGGATCGAGGTGAGGGAGAGAGAC
GCCCGCCTGGAGGCCGAGAAGGAGCAGCTCGCGAAGGACTCCTCCGTGGC
AGACGCCGCGGTCGCCGCCGGCGGCGGCGACACGCCCGGCATCGACGGCA
CCGGAGGTGACGTCACCGGAGCCGGTGACGGTCCGGAGTGGGCGTCGGAC
AAGTGGATCCTTGCCGGGATGAACAGCGGCGGCGGCGGCGGCGGTGACAA
GCTTCCCGTCGCGGAGAGACCGCCGGTCTACGTGAGGGACGAGAAGGCCA
GCGCGAAGGCGGCGGCGGTTGCCAGGCTTCTGGCGGGCGGCGTGGCGGAC
GCGAGCGGCGCCTCCGGTGGCGGCGAACCGTTGGACAAGGAGGAGGGGAC
AGGGCCTGCGAGCGCACAGGCGTCGCCAACGTCGGAGAAGGCCTCGGGGG
TGTCCAAGGGTGCCGAGGCGCAGGGGGACGTGGCGGTTCCGACGGCCATG
GTCGAAGACGGAGACGAAACACCGCCGCCGCCGCCGGAGTCGGATCTGGG
GGATGGCCCCGCCGAGGCTAGCGGAGATGCCGACGGCGGAGGCGTTGTCG
TTCCGAACGACACCGACCCGGAGGAGGAGGAGGAGGAGGACCCCGCTTTG
GCGGCCGTCCCTGCAGCCGACGACCGGGGCAGCGGCGCGAAAGAACCTAA
GGGCGACCGCGGAGCGAACGGCGGGGTCGTTTCTCCCGCTGATGCTGATG
CTGATGCTGATGCTGTTACTGCTGCCGAGCCGCCGAGCGTCGCGGCGCTG
TGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:218919..223821-

>mRNA_Ecto-sp6_S_contig103.903.1 ID=mRNA_Ecto-sp6_S_contig103.903.1|Name=mRNA_Ecto-sp6_S_contig103.903.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1278bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:218919..223821- (Ectocarpus species6 EcLAC_371)
GAGCGGCCGCACAAGCGACGCGGCAAGGCCGGCACCCCGGCGAACCCTGC
GGCGGTTACACTTTCCCCGAAGGCGATGCGGCGAGACTCCTTCGCCGCAT
CTCCCGCCGCCGCCGCCTGCGAGTACGACGACGAGGAGGACGAGGAGGAG
GAAGACGAGGCGATGATGATGGTTTCCGCCGGGGACGCTGGGCTTGGCTT
CCCCTCCTCGCCGCCCGTTCCCAAGACCCTTGCGGAGAGGCTGGAGTTGG
TCAAGGGCGAGGAGGCCGAGCTGCTGCGGGAGTTCGAGGAGACCCACAAG
CGGATCGCCCAGGAGGAGGAGGCGAAGCGTGAGGAGATGGCGGAGTTCCA
GCGAGCCGGTGAGGCCGCCCTGCGCGCGATGCAGAAGGAGAAGGAGGAAG
CTTTACGCCGCATTTCGGCGGAGCGCAAGTGCAAGGCGGCGGAGCGTCAA
GAGCTGTTGCACAAGCGCTTGAAGGAGTTCGAGGCCGAGGAGGCTGAGTT
CCGGATCGAGGTGAGGGAGAGAGACGCCCGCCTGGAGGCCGAGAAGGAGC
AGCTCGCGAAGGACTCCTCCGTGGCAGACGCCGCGGTCGCCGCCGGCGGC
GGCGACACGCCCGGCATCGACGGCACCGGAGGTGACGTCACCGGAGCCGG
TGACGGTCCGGAGTGGGCGTCGGACAAGTGGATCCTTGCCGGGATGAACA
GCGGCGGCGGCGGCGGCGGTGACAAGCTTCCCGTCGCGGAGAGACCGCCG
GTCTACGTGAGGGACGAGAAGGCCAGCGCGAAGGCGGCGGCGGTTGCCAG
GCTTCTGGCGGGCGGCGTGGCGGACGCGAGCGGCGCCTCCGGTGGCGGCG
AACCGTTGGACAAGGAGGAGGGGACAGGGCCTGCGAGCGCACAGGCGTCG
CCAACGTCGGAGAAGGCCTCGGGGGTGTCCAAGGGTGCCGAGGCGCAGGG
GGACGTGGCGGTTCCGACGGCCATGGTCGAAGACGGAGACGAAACACCGC
CGCCGCCGCCGGAGTCGGATCTGGGGGATGGCCCCGCCGAGGCTAGCGGA
GATGCCGACGGCGGAGGCGTTGTCGTTCCGAACGACACCGACCCGGAGGA
GGAGGAGGAGGAGGACCCCGCTTTGGCGGCCGTCCCTGCAGCCGACGACC
GGGGCAGCGGCGCGAAAGAACCTAAGGGCGACCGCGGAGCGAACGGCGGG
GTCGTTTCTCCCGCTGATGCTGATGCTGATGCTGATGCTGTTACTGCTGC
CGAGCCGCCGAGCGTCGCGGCGCTGTGA
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