mRNA_Ecto-sp6_S_contig103.900.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig103.900.1
Unique NamemRNA_Ecto-sp6_S_contig103.900.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig103.900.1 vs. uniprot
Match: D7FXU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXU7_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.290e-17
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 MTSPPRLPCTPVELSHSLGTLTAARRRRDGQTRCGVA 111
            MTSPPRLPCTPVELS SLGTLTAARRRRDGQTRCGVA
Sbjct:    1 MTSPPRLPCTPVELSRSLGTLTAARRRRDGQTRCGVA 37
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BLAST of mRNA_Ecto-sp6_S_contig103.900.1 vs. uniprot
Match: D7FMM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM4_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 3.390e-7
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 3 
Query:    3 DIPSKATVHAGGALTFLGNIDCGKTSK 83
            DIP KATVHAGGAL FLG+IDCGKTSK
Sbjct:   36 DIPPKATVHAGGALKFLGDIDCGKTSK 62
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXU7_ECTSI1.290e-1797.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMM4_ECTSI3.390e-788.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig103contigEcto-sp6_S_contig103:196521..196793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size114
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_001450.1
Cds size114
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348741.0799117-CDS-Ecto-sp6_S_contig103:196520..1965511682348741.0799117-CDS-Ecto-sp6_S_contig103:196520..196551Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 196521..196551 -
1682348741.0891678-CDS-Ecto-sp6_S_contig103:196710..1967931682348741.0891678-CDS-Ecto-sp6_S_contig103:196710..196793Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 196711..196793 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig103.900.1prot_Ecto-sp6_S_contig103.900.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig103 196521..196793 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig103.900.1

>prot_Ecto-sp6_S_contig103.900.1 ID=prot_Ecto-sp6_S_contig103.900.1|Name=mRNA_Ecto-sp6_S_contig103.900.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=38bp
MTSPPRLPCTPVELSHSLGTLTAARRRRDGQTRCGVA*
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mRNA from alignment at Ecto-sp6_S_contig103:196521..196793-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.900.1 ID=mRNA_Ecto-sp6_S_contig103.900.1|Name=mRNA_Ecto-sp6_S_contig103.900.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=273bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:196521..196793- (Ectocarpus species6 EcLAC_371)
ATGACATCCCCTCCAAGGCTACCGTGCACGCCGGTGGAGCTCTCACATTC
CTTGGGAACATTGACTGCGGCAAGACGTCGAAGGTGAGATATTTTAAATC
CCGGCCAGATCAACTCTCAGCAGCTATTGGCTGTAGACAAATCAGGTTGG
GTTCCTATACGTGACGAACATCAACGACAATGTCGCCAACGTTTGCTGAT
GCGATGCTGATGCTGCTGTGGATGTGGTGTTCTCACATGCAGAGATGGAC
AAACGCGGTGCGGGGTGGCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:196521..196793-

>mRNA_Ecto-sp6_S_contig103.900.1 ID=mRNA_Ecto-sp6_S_contig103.900.1|Name=mRNA_Ecto-sp6_S_contig103.900.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=114bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:196521..196793- (Ectocarpus species6 EcLAC_371)
ATGACATCCCCTCCAAGGCTACCGTGCACGCCGGTGGAGCTCTCACATTC
CTTGGGAACATTGACTGCGGCAAGACGTCGAAGAGATGGACAAACGCGGT
GCGGGGTGGCTTGA
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