Homology
BLAST of mRNA_Ecto-sp6_S_contig103.900.1 vs. uniprot
Match:
D7FXU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXU7_ECTSI)
HSP 1 Score: 75.9 bits (185), Expect = 1.290e-17
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 1
Query: 1 MTSPPRLPCTPVELSHSLGTLTAARRRRDGQTRCGVA 111
MTSPPRLPCTPVELS SLGTLTAARRRRDGQTRCGVA
Sbjct: 1 MTSPPRLPCTPVELSRSLGTLTAARRRRDGQTRCGVA 37
BLAST of mRNA_Ecto-sp6_S_contig103.900.1 vs. uniprot
Match:
D7FMM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM4_ECTSI)
HSP 1 Score: 53.5 bits (127), Expect = 3.390e-7
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 3
Query: 3 DIPSKATVHAGGALTFLGNIDCGKTSK 83
DIP KATVHAGGAL FLG+IDCGKTSK
Sbjct: 36 DIPPKATVHAGGALKFLGDIDCGKTSK 62
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.900.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.29e-17 / Id = 97.30 Expect = 3.39e-7 / Id = 88.89 Sequence D7FXU7_ECTSI D7FMM4_ECTSI
Match Name E-value Identity Description
D7FXU7_ECTSI 1.290e-17 97.30 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] D7FMM4_ECTSI 3.390e-7 88.89 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 114 Hectar predicted targeting category no signal peptide or anchor Exons 2 Ec32 ortholog description hypothetical protein Ec32 ortholog Ec-23_001450.1 Cds size 114
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348741.0799117-CDS-Ecto-sp6_S_contig103:196520..196551 1682348741.0799117-CDS-Ecto-sp6_S_contig103:196520..196551 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig103 196521..196551 - 1682348741.0891678-CDS-Ecto-sp6_S_contig103:196710..196793 1682348741.0891678-CDS-Ecto-sp6_S_contig103:196710..196793 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig103 196711..196793 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig103.900.1
>prot_Ecto-sp6_S_contig103.900.1 ID=prot_Ecto-sp6_S_contig103.900.1|Name=mRNA_Ecto-sp6_S_contig103.900.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=38bp
MTSPPRLPCTPVELSHSLGTLTAARRRRDGQTRCGVA* back to top mRNA from alignment at Ecto-sp6_S_contig103:196521..196793-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.900.1 ID=mRNA_Ecto-sp6_S_contig103.900.1|Name=mRNA_Ecto-sp6_S_contig103.900.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=273bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:196521..196793- (Ectocarpus species6 EcLAC_371)ATGACATCCCCTCCAAGGCTACCGTGCACGCCGGTGGAGCTCTCACATTC
CTTGGGAACATTGACTGCGGCAAGACGTCGAAG GTGAGATATTTTAAATC
CCGGCCAGATCAACTCTCAGCAGCTATTGGCTGTAGACAAATCAGGTTGG
GTTCCTATACGTGACGAACATCAACGACAATGTCGCCAACGTTTGCTGAT
GCGATGCTGATGCTGCTGTGGATGTGGTGTTCTCACATGCAGAGATGGAC
AAACGCGGTGCGGGGTGGCTTGA back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:196521..196793-
>mRNA_Ecto-sp6_S_contig103.900.1 ID=mRNA_Ecto-sp6_S_contig103.900.1|Name=mRNA_Ecto-sp6_S_contig103.900.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=114bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:196521..196793- (Ectocarpus species6 EcLAC_371) back to top