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Homology
BLAST of mRNA_Ecto-sp6_S_contig103.891.1 vs. uniprot
Match: D7FXV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV5_ECTSI) HSP 1 Score: 341 bits (874), Expect = 6.950e-115 Identity = 172/176 (97.73%), Postives = 174/176 (98.86%), Query Frame = 3
Query: 42 MKTRHSALVMFIVASWAGLAQSWGGGRRAEDKTHTLAWEAFSADMGRGDCTMDSLSEQASVTLPIGQTVTKDEYRLACENSMEDTTVGETSLHDGKLVSIDRVSFSVEAMVTAKATSLKTGFQQDVSYPAAFFMTIDLRTNKLAEVRMYAQNIALLAARGYTMIPSSSYGPVIRPV 569
MKTRHSALV+FIVASW GLAQSWGGGRRAEDKTHTLAWEAFSADMGRGDCTMDSLSEQASVTLPIGQTVTKDEYRLACENSM DTTVGETSLHDGKLVSIDRV+FSVEAMVTAKATSLKTGFQQDVSYPAAFFMTIDLRTNKLAEVRMYAQNIALLAARGYTMIPSSSYGPVIRPV
Sbjct: 1 MKTRHSALVIFIVASWVGLAQSWGGGRRAEDKTHTLAWEAFSADMGRGDCTMDSLSEQASVTLPIGQTVTKDEYRLACENSMGDTTVGETSLHDGKLVSIDRVNFSVEAMVTAKATSLKTGFQQDVSYPAAFFMTIDLRTNKLAEVRMYAQNIALLAARGYTMIPSSSYGPVIRPV 176
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1173 |
| Hectar predicted targeting category | signal peptide |
| Exons | 9 |
| Cds size | 531 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1682348740.319482-UTR-Ecto-sp6_S_contig103:124224..124265 | 1682348740.319482-UTR-Ecto-sp6_S_contig103:124224..124265 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig103 124225..124265 + |
| 1682348740.4051783-UTR-Ecto-sp6_S_contig103:130928..131529 | 1682348740.4051783-UTR-Ecto-sp6_S_contig103:130928..131529 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig103 130929..131529 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1682348740.3285246-CDS-Ecto-sp6_S_contig103:124265..124343 | 1682348740.3285246-CDS-Ecto-sp6_S_contig103:124265..124343 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig103 124266..124343 + |
| 1682348740.3378334-CDS-Ecto-sp6_S_contig103:124648..124706 | 1682348740.3378334-CDS-Ecto-sp6_S_contig103:124648..124706 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig103 124649..124706 + |
| 1682348740.3474183-CDS-Ecto-sp6_S_contig103:126289..126328 | 1682348740.3474183-CDS-Ecto-sp6_S_contig103:126289..126328 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig103 126290..126328 + |
| 1682348740.35775-CDS-Ecto-sp6_S_contig103:126884..126928 | 1682348740.35775-CDS-Ecto-sp6_S_contig103:126884..126928 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig103 126885..126928 + |
| 1682348740.3661177-CDS-Ecto-sp6_S_contig103:127526..127595 | 1682348740.3661177-CDS-Ecto-sp6_S_contig103:127526..127595 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig103 127527..127595 + |
| 1682348740.3734202-CDS-Ecto-sp6_S_contig103:128234..128303 | 1682348740.3734202-CDS-Ecto-sp6_S_contig103:128234..128303 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig103 128235..128303 + |
| 1682348740.3807817-CDS-Ecto-sp6_S_contig103:129449..129518 | 1682348740.3807817-CDS-Ecto-sp6_S_contig103:129449..129518 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig103 129450..129518 + |
| 1682348740.38842-CDS-Ecto-sp6_S_contig103:130138..130201 | 1682348740.38842-CDS-Ecto-sp6_S_contig103:130138..130201 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig103 130139..130201 + |
| 1682348740.3967826-CDS-Ecto-sp6_S_contig103:130886..130928 | 1682348740.3967826-CDS-Ecto-sp6_S_contig103:130886..130928 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig103 130887..130928 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig103.891.1 >prot_Ecto-sp6_S_contig103.891.1 ID=prot_Ecto-sp6_S_contig103.891.1|Name=mRNA_Ecto-sp6_S_contig103.891.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=177bp
MKTRHSALVMFIVASWAGLAQSWGGGRRAEDKTHTLAWEAFSADMGRGDC TMDSLSEQASVTLPIGQTVTKDEYRLACENSMEDTTVGETSLHDGKLVSI DRVSFSVEAMVTAKATSLKTGFQQDVSYPAAFFMTIDLRTNKLAEVRMYA QNIALLAARGYTMIPSSSYGPVIRPV* back to topmRNA from alignment at Ecto-sp6_S_contig103:124225..131529+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig103.891.1 ID=mRNA_Ecto-sp6_S_contig103.891.1|Name=mRNA_Ecto-sp6_S_contig103.891.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7305bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:124225..131529+ (Ectocarpus species6 EcLAC_371) AAGAGCTGAAGCAGCGTTGTGTGTTTGTGCGCCTGCGAAGGATGAAGACA
AGACATAGCGCCCTCGTGATGTTCATCGTTGCTTCATGGGCGGGACTAGC
GCAGTCATGGGGTGGAGGGGTGAGTGCTGGCGTCGCTGTCGCCGCGTTAT
GAGGCAGCAGACGAATTCAAAAACGCGGAGGAATTTACGTGTCTTCCGAA
CATGACATCGTGTGCTGTAAGACATTACCTAGACTGCTTGCTGTGTTGCT
TTCTTGTGACAGGCAGGAATTTGATGCTGCTCGGGCTCCGGATCCTACTA
CTATTGTCGCATGCAAGCGTATGCGCTTTTTCGATGACCCGATCAAGTTG
CTCGTCCAGTTATTTACGTTTACCCTCGGATGCCCTCTCCTTTCCCTCCG
TCCTGGGATCTCCCTCGTATGCAGCGACGAGCAGAAGACAAGACACACAC
TCTTGCGTGGGAGGCATTCTCCGCAGATATGGGTGAGGTTCGAAATAAGC
ATTAGTTTCGTGTGCGTGTACTTGAACACGACAACGTTGTTTCCATCCCC
GCGTCAAGCACGATCGCTCCACACTGCCGCCTGTAGTCTTGTGCGGAGCG
CACGTTGCCCTTGCCTATTGAACTACAACAGGGAAGCGACAAGAGAGATG
GAGAGTGAggagggggGGGGGGGGGGTGTACTCATAGTCGTGCATGCCGT
AGTCGTTTGACCATTGACCTCGCATCCCTACAAAGCCGGGACGGAGCACG
CCGGGTTCTCACCGGACCAGGCTCTCACATCACCAAGCGCGAAGCGCCGT
GAGGTATTTGGCGAGTCGCATGAAGGGTGAGCTGCATCCTGCTAAGGGTG
TTCGGCATCTTGTGCTTACTTCCTTGCGTACGGATGACAGCTACGTATGA
CTTAATTTATTTTCTGGTGCTTTCACTTCCAGAGACAGTTGTAAGCACTG
TGTAACTGCCTCGACGGTGCTCGACCATTTTAACACAACGTGGTGCGATC
ATCCCCCGTTGCGCGGAGTAGGGTTCTCGACCCCGCACAACATGATCTAC
TCGACCACCATTATGGTTACCGCCAAAAAAAAAAACGAGGTAAAAAAAAA
AAACGGTAACCTGGTTGCCGAGTTCACGAAGTGAATTGGCTTGTTTTACA
ACGTCGTTGCCAAGCGACGAAAACCCGATCCCGATGGCAAACACCGAGTG
GGGGGCTTGTTTTACAACGTCGTTGCCAAGCGACGAAAACCCAATCCCGA
TGGCAAACACCGAGTGGGGGGCTTGTTTTACAACGTCGTTGCCAAGCGAC
GAAAACCCAAACCCCGATGGCAAACACCGGGGGGGCGGGATACCCTCGTA
TCGTGTCACGAATAGCCAACCTCTTAATAGGCAACGCAAGGAGGAGTACG
CAGAGAAAATGCTCGAGAGAACGGGGACCGTGCTCCTGGTCGGGTTGACC
CGTACGGAGAAGGGGTGCTTGCGACTTGGTCGAACGCACTCGTTGACCGG
AATGTTCCTGAAAACTTCGTACAACGGAAGCGGAGATATGACATCGCTCC
GGTGTTGTGCGGGCAAGTATCTCCTCGAGATGCACCTAACCACGGAACCA
CGTGCAGAACGCTATTCTAGAACCGCTCCCCGGGTGAAGAAAGGCTTTCC
ACATCGGATGGGTAGGCGTGTTGGTATCTGGGATGCATGCTTGTACTCCA
CGGGATTGCATCGCGCTGCCGTGCTGGGAAGCAAGACATGTGTTTACCCG
TGCACCCTACTCTCTGTACACCAAACTCCAACTATCTGGAGCAAGTCGTT
TGATCCCGCGGTGTCTATCCGTCTAACCCGCTCCTACAAGCGAAACCATC
CCCGCACCAACCCCCCTCCCCCCCCCGCCGCCGCCAATAGTAGTGGCCCC
GTCCGCGACGCCTCACACATGAAAGTGGAAGAGAGTACCGACAGATTTTA
ACCACCACAGAAGCAGCGACGTTGCTTCTTCTCGAAAGGCTTGCGTGCCC
AGTGGGATATGGCTAAAGGCTATACCTTATCTCCCCCCCGCGCGCCGCCC
CCCACATGCGGTCAGGTCGAGGCGATTGCACAATGGACTCCCTTTCGGAA
CAAGGTGCGTGCACTGAAAGCTCAAACCCGCATTTCCCTAGCGGTCTGCA
TCGGGCCACAGCCATGCCAAAAGTGCTCATGTTGGCATCGTTTGTTCTGG
CAGGAAGAAGAATATTGTGTGCATTTTCTCGTGTGATGTGGCGTCAAGTA
ACGTGCCATCTAGCACGAAGGCATGCGTGTGTGTCGTAGCCCCGACGGTT
GCTGTTGATGTGCGAGAGCCAATTTGTCGTATCATTCCCAGGGTATGTTT
CTCATCTTGGTCACAACACACCTACGCCCATACTACCAACCCCTTGTCGC
CCAACAACAGACCTCCTATGCGCCCCTTTCCGTGCCCCCCTTGTTTCTCC
CCTGCTGCGTTCATTGTTTTGCCGGTCGTCTTCGCGCGTGTCCGACCAAT
CAAACGCCCTGGTGGGCGTGGGCCCGGGACGCGAAAAACAACCGCGTTCG
GGTATAATTTCGTGCGCTTTTCTTGCGAACGTGCGCGCCGAACACCTACT
CCTCGCCCGCTCGCTTTCGCTCTCCTGCACGCTTCGTGCTGCGACTGCCT
GTGGCTACAGCTAGCGTCACCTTGCCAATCGGACAGACCGTCACCAAGGA
TGAGGTGCGGCGAGAGCGAGAGGGGGTTGTTGCGTCTCGTCGTCGATGCG
AACGAGGGTGGTAGCGGGTATCTCTCGGGATCCTTTGTATGACGCGGTCG
AGGTTGGGTATTACGGCACTGGCCCAGCGTAGCCCGGACCACCCACATGA
AATAACAAGGAACTTCGTACCCGCCCCCATGCAATCTGATGTTGTACCTC
GTACTGTAGTACAACATGTGTTTCATTCACCTGCTGTCTGCCCCATTGCC
TCTCCATCGAGTTTCCTAGGGACACGGGACTAGGGTTCCAACGCCAGCAT
ATGATGTACCTCTCCCTCTTGTACGGGTAGGCGCAAACCGCAGTAGTTGC
AGGTCTCTCTCGCCCTCTCGCTCTCCGAGGCGGCAGCAGTAGCAGCACTT
CTCGATCTCCTCGTTGCCAAAACCGCGTCGTGGTCACTCTTTGCTCCGGC
TCTGGACGGGCATGTAAATGCCTTGGTACCCCCTGGCACCCCTCCTACGA
ATTTCAACATGCTCGCGGCGTCATTGCAAAGATGGCCACTTTTTCTGAGT
CTCCCGCCCCCGCGGGCGTTTCTTTTTTCGTCCCGTGCTGTCTTGTCCGC
AGTACCGGCTAGCGTGCGAGAACAGCATGGAGGACACAACCGTCGGCGAG
ACTTCCCTCCACGACGGGAAGGTGACCACGAAATTGAGACCGTGTTGTTT
CCCTACGTGTGTTCTTGTACAAGTTTTTTCCATTCGGTTGTCAGTCAGGT
GTAGATTGGTGAGACGGTCCAAGTCTCTCTTTGTTAGTTTCAGTATGGGA
TGTGAGATCAGTTGGGTGTATTTTGAAAGGATTTTGGTTCCACCCGAAAA
ACAGGTAGGCGAAAACGTAGGGTTTATTCAACAGCCACGCAAGCAACTGA
CCTTTGGCCGCGCTTTGGAGAGGCTTGGGAGCGGGAGAAACATTTGCCTT
CTGCCCTTCCGCGATTGGCCGTTTCTTTGTTGTGTTACCGTACCGGACAG
CCGTGCGCACGAAAATATTGACACCGGAGAAGGTGGTGGTGGTCGAGTAG
CAGAGTGCCGCCCTTGCGGCGACGCCTACTTGCCTGCTTCGCTCATGTTT
GAGTTTAAGCTCCTAGTGTTGTCAGCCCCCTCTCGGCCATCTAGACTTGC
TTCCTTCAGCAATGAGAGCGGCTTATCCCGCGCTCTGCCTTACACGTGCC
GACACATACCAATAGTCTGGGTGTGATTGGGGAAGCACTATAACCATGCC
TGCCGGAAGCCAAAATAATCGTGTCTCTGCCTGTTTTTTTGTTCGTTTGA
TATTTTTCAGTTGGTCTCGATCGACAGGGTGAGCTTTAGCGTCGAGGCGA
TGGTGACGGCAAAGGCGACATCGCTCAAGGTGCGTACTTCCCCTTCCTTT
TCGGTATTTTTGCATGCCTCTACAAGTTTTGTTTTGTACCACATATTGTC
CgtacttCAGCTTCCTTTCGGTATGTTTTCGTGCCTCTATTTTTTTGTTT
TTTCCACAAACTCTGAGTATTAGCGTACTTTTCGTTCCTCTCAGTATGCT
TTTATGCCTACATATTTTTCGGGATTCACCAAATACCCCGAGTACATGTT
TTCGTGCCTCTATTTTTGTTTTTTCGCTTTTTCCACATTAGCGTACGTTT
ATCTTCCTTTCGGTATGTTTTCATGCCTCTATTTTTTCGAATGGTTCATG
TTACGCTGTAACAGTTCTCGGCGAAGAGGTTTCCAACTCGGCACCGCTTG
GCGCAGGTACATACCCCCCATCCGTTGTAGATAATCGGCTGTGAACCCAT
GCTCACGCCCAATTCTGGCAGCGAGTCATAAACACTGTCTAGGCATATCT
CTTCAACCCTTTATATTTGGTTGTACTATTCAATAGATGGCATACACCAG
TTGGCGCGGTTTCCCTGCTTGGCGTTGTCTGTCTTGGAGGTGGTGAGACT
TGTGTATTTTGGTAATGTGAACCGTGTTTAGGTTGGTCTGTGACGATGTG
GATCGGCTTTCTCCTTCTAGAGTCGAAACGGATGCTGACTTGTATCGGTT
GAACATGAGGAGGTGGTTTTTGTTTCGAACTACTACAACAACATCAACAA
CACCAGCAGCAACTAACGGGTTGCGTCGTGCTTGTGTGGTTTCCCCCTGC
TGCCTTGGCCATAGCTGCACTTCCTCGACCCAAGCCCTTTGGAAACGGAA
GGAGCGACCCACTCTTTTACATTGGAGACGACGATATGCCGGGGTTTCTA
TGTGGCTTCCTTAAACAACCAGGACTAATCATGATCCGCTTGATGTCTTC
TTGGCCAACATGGAAAAGCATCACCACCTTTTTCTTGCCTTCGTATCAAC
GTGAAGTTGCTCATCAAAGTGTTTGAGACAATTCGCACGTGGGTGTTGTG
CTCGTCTGTTTCAATTCCTTCGGGGCAGGACACGCATGTAAATTGCACAC
CTGAACTCTCCCCCTGCGGCACCCACCCTACCCGTCCCCCCGCTCTGCGT
TACGGGCCCCCTTGCTCCACCCCAGACCGGCTTCCAGCAAGACGTCAGCT
ACCCCGCGGCTTTTTTCATGACGATCGACCTCAGGACAAATAAGGCAAGA
AGGAAGAACTACAAACTGCATTTTTGAGCCTGCTTTTATGCATCACCTTC
TGCCACTTGGAAATGAGTTGATGATGTCCGTGTGTCGAGTTTTACGTTTG
GGCACAGAAGGTATCCGCTTGACACACGTGAGCGTCATGGCATCTACACT
AGTGGGCCAAGGTTTTCGCTCGGGTCAAGGCTATGCTTGCGCGATGTGGG
ACGGCCTAAACATGCATAAAGTTCTTCATGCTCTCGCAGTGTTTATTTCG
CGGGGTTAGGCTGATCGGTCTACTCCTCACACTCGCTCCCCTTTTTGGAC
CGTAGTTGTCTTAAATTGACGGCTTTGGCGGCTTTTTGTATCTGTTGGAA
CGTGCGGTGGAACTTCGGCCTCGTGCCCCGGTAGCGCAAACGGAACGCTA
GGCGCAGGTTTGGAGGTTTTGCGTGCGAGTACGGTTGTCCCGGCAACGAA
CGAAAGTCTTACACCAGTGCACCTTTTCTTGGCCAAGATTATAGTTGATT
CCAACCGGCGGCCTATCGACTTGTAGTCGTGCATTCGACGAAACCGATTT
TTAACATGATGTCCCCACCCCTTTGCCTCATGACGTCACGCCGGGCACCG
ACGAACCTCCCCAGTTAGCTGAAGTGCGGATGTACGCGCAGAATATCGCC
CTGCTGGCGGCGAGGGGGTACACCATGGTGAGCCGTCAATATTCCGTGCC
GCCGAATCAAGTCGCGAATGAAGTCCAATACTTTTATTGTACCTTTGCCA
CGCAAGTAGGCAGGTGTTTTTTCTGTGGGTGAAGAATGTAAGAGCCCCCC
GTTTTTCCTTTTCATTGTTTTAATGTGAGTTATGTAGTTCCATTGTTTGT
TGGGATGGGGGGCTCCGTGTGTCCCACGCCTCACACTACGGCGCTATCCC
GGTGGACGTACTTCGTTTGTACTCACCCCTCACACTGTCCCCGATGGAAA
GATTGGTTGTAAGATAGACGTCCTTTGGGGGGTACCGCATGGTAATTATG
GTAGTGAGTGTTTGCGCATGGTCCACTTCTCCGTAATACTTCGAAGTAGA
GGTTACTGCTGTCTTACAGGTAGCGTGGCGGCCTGAATGGGTTGTGAGTT
CGTGCGTTGACTGCCCAGGCGTACATGGGTGAACGGATACTGCTGTCCCG
TCCTTTATGATTGAAGAAAGAAAACAGACATTTTTTTCTCTCTGTGGCGT
GCTCCTGATTCCCATTCTATCACGCCATCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCCCTCCTTCGCTGCCGACCGTTTGTAATCCACCTTG
TCCTCCCTATCGCATATCGCACACGTCCGTCCCCGCGTGTGTATGAAACC
GACGATAATCAGATCCCATCTAGCAGCTATGGTCCGGTCATCCGCCCGGT
GTGATGATGATGCGGTGCACAACCGTTCTGTTGATGGAGTTTTGTGGTTT
CTTCGGCGAGCAGAAGTACTGGGGTGACGTTCGCGTAGTCTTGTGGTGAT
GGGCTGGTTTGCATTTTCGGCACGTTCCCTGCTTATAAATACTCTCCCGG
AAACGATCCGCGGCAAGATCGGATTTGTACATCGTCCCGAACGGGCGTAG
TCTTGCTACGGTCGTAGACTTACTACGGAGTATTAGTAAATTGTGGATGT
CGTTTTGTAAATCGTGGTGGTGTGGTGTTTTGTATCGCGCAATGGGAGAG
GCTTCCTCCTGCAGCGGCGCCAGTGCGCACAATCTACCATTTATTTTGTC
GGCAAAGCAGGCGACGACGCCATCGTTTGATACGGGCTCGACTTATCCCA
CCTTTGTTGTGTTCTGGACAGTTACCTTTAACGTGTTCAACTACTTGTAC
GGGCCGGCTGCGGCTGCAGCTGCTGCATGGCGATCCACAGGGTGCCGAGG
ACCATCATGGTGGGGCCACGAACAACGGGCTCTTCGTCGTTTGTCAACAT
ATATATCCAAGCTCATGCATCGAACCGGGCAAGCTGTGATCAGAAACAGT
AAAGC back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig103:124225..131529+ >mRNA_Ecto-sp6_S_contig103.891.1 ID=mRNA_Ecto-sp6_S_contig103.891.1|Name=mRNA_Ecto-sp6_S_contig103.891.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=531bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:124225..131529+ (Ectocarpus species6 EcLAC_371) ATGAAGACAAGACATAGCGCCCTCGTGATGTTCATCGTTGCTTCATGGGC GGGACTAGCGCAGTCATGGGGTGGAGGGCGACGAGCAGAAGACAAGACAC ACACTCTTGCGTGGGAGGCATTCTCCGCAGATATGGGTCGAGGCGATTGC ACAATGGACTCCCTTTCGGAACAAGCTAGCGTCACCTTGCCAATCGGACA GACCGTCACCAAGGATGAGTACCGGCTAGCGTGCGAGAACAGCATGGAGG ACACAACCGTCGGCGAGACTTCCCTCCACGACGGGAAGTTGGTCTCGATC GACAGGGTGAGCTTTAGCGTCGAGGCGATGGTGACGGCAAAGGCGACATC GCTCAAGACCGGCTTCCAGCAAGACGTCAGCTACCCCGCGGCTTTTTTCA TGACGATCGACCTCAGGACAAATAAGTTAGCTGAAGTGCGGATGTACGCG CAGAATATCGCCCTGCTGGCGGCGAGGGGGTACACCATGATCCCATCTAG CAGCTATGGTCCGGTCATCCGCCCGGTGTGA back to top
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