mRNA_Ecto-sp6_S_contig103.887.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig103.887.1
Unique NamemRNA_Ecto-sp6_S_contig103.887.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Match: D7G0T1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T1_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.140e-39
Identity = 88/186 (47.31%), Postives = 105/186 (56.45%), Query Frame = 1 
Query:    1 MGLTLVVHPGVRLTIQAPTVSLARTEASALERPTRARLVLGSIDFQVTTWLEQPLDGTVVSSTQSESHKFSASCLDERGVVWVGDQGVFLLGNNEVTYTATSVFVSASKQQHVAIPVSSSKEPSFHKPDPAXXXXXXXXXXXXXXXXXXAGDAVPXXXXXXXXXXXXXXXXXXXXXXXXXKRRLCS 558
            M LTL++HPG  LT++APTVS+A TE  A+ R     LVLGSIDFQVT+WLE PLDGTVV+ST SESH  +   LDE  +VWVGDQ   ++ ++ + +TA SV VS S  +HVA P  S KEPSFHK DPA                  A DAVP                         KRRLCS
Sbjct:    1 MALTLIMHPGAHLTVRAPTVSVAWTEERAM-RDHPVLLVLGSIDFQVTSWLEHPLDGTVVTSTYSESHASTKFSLDEHNIVWVGDQAS-VVSDHSIAFTARSVVVS-SADKHVADPAVSFKEPSFHKSDPAPTSTAADPNAGDGDKNVPAHDAVPTSTVTSSVRSPSESTSSDRAKADGKKRRLCS 183
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BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Match: D7FMM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM4_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 7.480e-38
Identity = 85/131 (64.89%), Postives = 95/131 (72.52%), Query Frame = 1 
Query:    1 MGLTLVVHPGVRLTIQAPTVSLARTEASALERPTRARLVLGSIDFQVTTWLEQPLDGTVVSSTQSESHKFSASCLDERGVVWVGDQGVFLLGNNEVTYTATSVFVSASKQQHVAIPVSSSKEPSFHKPDPA 393
            MGLTL+VHP  RLTIQAPTVSLARTEA    +     ++LGSIDFQVTTWLEQP DGT+               LDERGVVWVGDQGV L  N++VTYTATSV VSASK  +VA PV+SS+E SFHK DPA
Sbjct:   82 MGLTLIVHPAARLTIQAPTVSLARTEAM---QDDPVLVLLGSIDFQVTTWLEQPFDGTM---------------LDERGVVWVGDQGVVLADNSKVTYTATSVVVSASK--NVADPVASSEEASFHKSDPA 192
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BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Match: D8LNC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC7_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 6.260e-8
Identity = 44/106 (41.51%), Postives = 57/106 (53.77%), Query Frame = 1 
Query:    1 MGLTLVVHPGVRLTIQAPTVSLARTEASALERPTRARLVLGSIDFQVTTWLEQPLDGTVVSSTQSESHKFSASCLDERGVVWVGDQGVFLLGNNEVTYTATSVFVS 318
            MG+ L VHPG +LTI+APTV + R E   ++     R V GSI F+VT WL + LDGT+               +D+ GVV    QG  L   N + YTA SV V+
Sbjct:   83 MGVALKVHPGAKLTIRAPTVMMKRRE---MDNQPILR-VFGSIQFEVTRWLPEHLDGTL---------------MDKHGVVAFEGQGS-LESRNTIRYTAASVVVA 168
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BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Match: D8LJ57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ57_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.090e-7
Identity = 39/121 (32.23%), Postives = 69/121 (57.02%), Query Frame = 1 
Query:    4 GLTLVVHPGVRLTIQAPTVSLARTEASALERPTRARLVLGSIDFQVTTWLEQPLDGTVVSSTQSESHKFSASCLDERGVVWVGDQGVFLLGNNEVTYTATSVFVS--ASKQQHVAIPVSSS 360
            G+ L+VHPG  LTI+APT+++ + ++   ++P     VLGS+DFQVT+W+++ L+G  V               D+ G++ V  +G+ +  +  + +TA SV V+  A+  +  A P  +S
Sbjct:   83 GIALLVHPGAELTIRAPTINMKKGKSMQDQQPILR--VLGSVDFQVTSWVKEHLEGAPV---------------DDHGIISVEGEGM-VRSDKAILFTARSVIVADPAAANKKEADPAETS 185
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BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Match: A0A6H5LGE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGE1_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.090e-7
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 2 
Query:  422 MVMATRTSKLVMRSPPPRSRPLLIRHLRALRRIARKLNEK-KGGY 553
            MVMATRTS+L++  P PRSRPL IRHLR+LRRIA KLNEK KGGY
Sbjct:    1 MVMATRTSRLMIPFPLPRSRPLFIRHLRSLRRIAPKLNEKQKGGY 45
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BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Match: A0A6H5KKU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKU9_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.500e-7
Identity = 47/122 (38.52%), Postives = 63/122 (51.64%), Query Frame = 1 
Query:    1 MGLTLVVHPGVRLTIQAPTVSLARTEASALERPTRARLVLGSIDFQVTTWLEQPLDGTVVSSTQSESHKFSASCLDERGVVWVGDQGVFLLGNNEVTYTATSVFVS---ASKQQHVAIPVSS 357
            MG+ L VH G +LTI+APTV + R E   ++     R V G++ F VT WL + LDGT+               +DE GVV    QG  L   N + YTATSV V+   A+ Q+   +  SS
Sbjct:    4 MGIALKVHAGAKLTIRAPTVVMKRRE---MDNQPILR-VFGNVQFDVTRWLPEHLDGTL---------------MDEHGVVAFEGQGS-LESRNTIRYTATSVVVADPAAADQKEADLTASS 105
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BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Match: D8LNB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNB6_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 2.090e-7
Identity = 44/106 (41.51%), Postives = 56/106 (52.83%), Query Frame = 1 
Query:    1 MGLTLVVHPGVRLTIQAPTVSLARTEASALERPTRARLVLGSIDFQVTTWLEQPLDGTVVSSTQSESHKFSASCLDERGVVWVGDQGVFLLGNNEVTYTATSVFVS 318
            MG+ L VHPG +LTI APTV + R E   ++     R   GSI F+VT WL + LDGT+               +D+ GVV    QG  L   N + YTATSV V+
Sbjct:   96 MGVALKVHPGAKLTICAPTVMMKRRE---MDNQPILR-AFGSIHFEVTRWLPEHLDGTL---------------MDKHGVVAFEGQGS-LESRNTIRYTATSVVVA 181
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BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Match: D7G9B0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B0_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 1.870e-5
Identity = 36/106 (33.96%), Postives = 57/106 (53.77%), Query Frame = 1 
Query:    1 MGLTLVVHPGVRLTIQAPTVSLARTEASALERPTRARLVLGSIDFQVTTWLEQPLDGTVVSSTQSESHKFSASCLDERGVVWVGDQGVFLLGNNEVTYTATSVFVS 318
            MG+ LVVH G R+TI+APTV + +TE    +   R   V GS++F+VT W+ + L+GT+                D  G+V    QG+ +     + YT+++V V+
Sbjct:  106 MGVGLVVHSGARVTIRAPTVLMQKTETMRGQPVLR---VQGSVEFEVTNWVPEHLEGTLA---------------DNHGIVSCEGQGL-VRSKMAILYTSSAVIVA 192
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G0T1_ECTSI1.140e-3947.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMM4_ECTSI7.480e-3864.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNC7_ECTSI6.260e-841.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJ57_ECTSI1.090e-732.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LGE1_9PHAE1.090e-777.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKU9_9PHAE1.500e-738.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNB6_ECTSI2.090e-741.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G9B0_ECTSI1.870e-533.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig103contigEcto-sp6_S_contig103:101347..103479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size561
Hectar predicted targeting categoryother localisation
Exons4
Cds size561
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348740.0586972-CDS-Ecto-sp6_S_contig103:101346..1014401682348740.0586972-CDS-Ecto-sp6_S_contig103:101346..101440Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 101347..101440 +
1682348740.0676749-CDS-Ecto-sp6_S_contig103:101648..1017761682348740.0676749-CDS-Ecto-sp6_S_contig103:101648..101776Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 101649..101776 +
1682348740.0765224-CDS-Ecto-sp6_S_contig103:102108..1022131682348740.0765224-CDS-Ecto-sp6_S_contig103:102108..102213Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 102109..102213 +
1682348740.092985-CDS-Ecto-sp6_S_contig103:103245..1034791682348740.092985-CDS-Ecto-sp6_S_contig103:103245..103479Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 103246..103479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig103.887.1prot_Ecto-sp6_S_contig103.887.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig103 101347..103479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig103.887.1

>prot_Ecto-sp6_S_contig103.887.1 ID=prot_Ecto-sp6_S_contig103.887.1|Name=mRNA_Ecto-sp6_S_contig103.887.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=187bp
MGLTLVVHPGVRLTIQAPTVSLARTEASALERPTRARLVLGSIDFQVTTW
LEQPLDGTVVSSTQSESHKFSASCLDERGVVWVGDQGVFLLGNNEVTYTA
TSVFVSASKQQHVAIPVSSSKEPSFHKPDPAPSSTAADSNDGDGDKNVQA
GDAVPTSTVTSSVNSPSESTSSDRAKAKRKKRRLCS*
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mRNA from alignment at Ecto-sp6_S_contig103:101347..103479+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.887.1 ID=mRNA_Ecto-sp6_S_contig103.887.1|Name=mRNA_Ecto-sp6_S_contig103.887.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2133bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:101347..103479+ (Ectocarpus species6 EcLAC_371)
ATGGGGCTCACGCTGGTCGTACACCCAGGGGTCCGCCTCACGATCCAAGC
CCCCACGGTGTCGTTGGCAAGGACTGAGGCAAGTGCACTTGAGCGTGAAG
AAGTCTAACGTTCGTTGCAATGGTACGGGAAGATTGAGATACCTCTGCTA
TCGGATTGATACTACAGCAGAAGAAGTACTGTAAATTTGAGTCTAGCGAT
TTTTCCGTATGAGAATTGGTTGTTATTATTTCGAAAGGAAACAAAATACG
TCCCCGCCCCGTTTCTCAAATAAATACGAACTCCCTTTGACAGGCTATGC
AGGACCAACCCGTGCTAGATTGGTGCTGGGCTCCATCGACTTTCAGGTCA
CCACGTGGCTTGAGCAACCGCTTGACGGCACTGTGGTGAGTAGCACACAG
AGCGAATCGCACAAGTTTTCGGCGTCATGTGTTCGGTACTCCGCCTTAGG
CTCCTCCCTCCGCCCAAGACGATTTGCTTTAATTTTGAGCAGGCATGACT
GACTGGGATAAAACCTCATGTGTAGCCCGCTGGACCGGCTGGAATTGGCC
CCGCGAGGTTGTGTATATATATTACGAAATGAACTGAACGTTTTGTCATC
GAGACACACAACGTGTTATTCGGGTTGGGTTCTCTTGACTATCATCACCA
ACGCTAATGTCGCTGACGTCTTCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTCGCTTCGGTGTTCTCAC
ATACATGCACAGCTGGACGAACGCGGTGTAGTGTGGGTCGGAGACCAGGG
CGTATTCTTGTTGGGCAACAACGAGGTCACATACACGGCCACATCCGTCT
TTGTGTCTGCTTCGAAGGTACACACATAATTTTCTTGAGTTTCCTCATGG
TGAGACGCACACGCCAGTTGCGTTTCGGGAGTAGTCCATGTAGCTCACTG
GGCCGACTGGAATTAGCCCCGTGAGAGAGTCTACATCTTTTTTTAGAAAC
GCGCTGGACGGTGAGACTAGTCATCGAGACACACAACGTGTTAGGCAAAT
GTTGGGTTCTCTTACGTGACGAACATCAACGACAATGTCGTCGGCGTCTG
CTGATGCTGATGCTGATGCTGATGCTGATGAGGCTGTGGATTTGGTGTTT
TCACATGCATAGATGGACGAACGCGGTGCGGGGTGGCTTGAAACTCAAGG
CTCAGTCCTGTCGGGCAACAATAAGATCACATACACGGCCAACTCCGTGG
TTGTGTGAGCTGATAAGATACATGCACGCACATATTGTATTATGTGCACG
CATCTTATCAGCTGACACAACAACAGAGTTGGCCGTGTACGTGACCTTGG
TGCCGGAAAGCACTGATCCTTGAGTTTCAAGCCACACCACACCGCTTTCG
TCCATCTGTGCATGTGAGAACACTAATGCCACAGCAGCAGCAACAGCAGC
AGTGGCTGCAGCAGCAGACGTTAGCGACACGGTGAGGCGCACATTCCTGT
CGGTTGCGTTTCGGGAGTAACCCATTTCTCAGGGGCGAACGCATAGAGGC
AGATAGGTCCTGGTGTTGCAAGCATGCCGTATTGTACGAGGACCGTGATC
ACATTCTTCTTCTCTATTGACACGGTTTAAGCCATTTGAGGGTCTAGAGG
AAGCTCGACTCTGTGATTGGCACTGTTAATATTGTTGCAGAACATATATG
TGTTGGCGAACTGTTGGGTGCGGGGTAGCGGGTGGTCACGCGATCTTGAA
TTTGCGTGTCCTCTTTTGAATCCTAACTGCGTTTCAACGCTGCTTGTTGT
GGGAAGGTTATTGACAATGTACTGCACTCGACTGGCCTCCCCACGTCCCC
TCTGTCGCTGCCGCGGTCTCCCGCCCACGCACCCCGCGCATCCAAACAGC
AACAGCACGTGGCCATCCCAGTTTCTTCGTCCAAAGAACCCTCCTTCCAC
AAGCCCGACCCTGCGCCGTCCTCCACCGCTGCCGACTCCAACGATGGTGA
TGGCGACAAGAACGTCCAAGCTGGTGATGCGGTCCCCACCTCCACGGTCA
CGTCCTCTGTTAATTCGCCATCTGAGAGCACTTCGTCGGATCGCGCGAAA
GCTAAACGAAAAAAAAGGCGGCTATGCTCATGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:101347..103479+

>mRNA_Ecto-sp6_S_contig103.887.1 ID=mRNA_Ecto-sp6_S_contig103.887.1|Name=mRNA_Ecto-sp6_S_contig103.887.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=561bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:101347..103479+ (Ectocarpus species6 EcLAC_371)
ATGGGGCTCACGCTGGTCGTACACCCAGGGGTCCGCCTCACGATCCAAGC
CCCCACGGTGTCGTTGGCAAGGACTGAGGCAAGTGCACTTGAGCGACCAA
CCCGTGCTAGATTGGTGCTGGGCTCCATCGACTTTCAGGTCACCACGTGG
CTTGAGCAACCGCTTGACGGCACTGTGGTGAGTAGCACACAGAGCGAATC
GCACAAGTTTTCGGCGTCATGTCTGGACGAACGCGGTGTAGTGTGGGTCG
GAGACCAGGGCGTATTCTTGTTGGGCAACAACGAGGTCACATACACGGCC
ACATCCGTCTTTGTGTCTGCTTCGAAGCAACAGCACGTGGCCATCCCAGT
TTCTTCGTCCAAAGAACCCTCCTTCCACAAGCCCGACCCTGCGCCGTCCT
CCACCGCTGCCGACTCCAACGATGGTGATGGCGACAAGAACGTCCAAGCT
GGTGATGCGGTCCCCACCTCCACGGTCACGTCCTCTGTTAATTCGCCATC
TGAGAGCACTTCGTCGGATCGCGCGAAAGCTAAACGAAAAAAAAGGCGGC
TATGCTCATGA
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