mRNA_Ecto-sp6_S_contig103.887.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Match: D7G0T1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T1_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.140e-39
Identity = 88/186 (47.31%), Postives = 105/186 (56.45%), Query Frame = 1

Query:    1 MGLTLVVHPGVRLTIQAPTVSLARTEASALERPTRARLVLGSIDFQVTTWLEQPLDGTVVSSTQSESHKFSASCLDERGVVWVGDQGVFLLGNNEVTYTATSVFVSASKQQHVAIPVSSSKEPSFHKPDPAXXXXXXXXXXXXXXXXXXAGDAVPXXXXXXXXXXXXXXXXXXXXXXXXXKRRLCS 558
            M LTL++HPG  LT++APTVS+A TE  A+ R     LVLGSIDFQVT+WLE PLDGTVV+ST SESH  +   LDE  +VWVGDQ   ++ ++ + +TA SV VS S  +HVA P  S KEPSFHK DPA                  A DAVP                         KRRLCS
Sbjct:    1 MALTLIMHPGAHLTVRAPTVSVAWTEERAM-RDHPVLLVLGSIDFQVTSWLEHPLDGTVVTSTYSESHASTKFSLDEHNIVWVGDQAS-VVSDHSIAFTARSVVVS-SADKHVADPAVSFKEPSFHKSDPAPTSTAADPNAGDGDKNVPAHDAVPTSTVTSSVRSPSESTSSDRAKADGKKRRLCS 183

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BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Match: D7FMM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM4_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 7.480e-38
Identity = 85/131 (64.89%), Postives = 95/131 (72.52%), Query Frame = 1

Query:    1 MGLTLVVHPGVRLTIQAPTVSLARTEASALERPTRARLVLGSIDFQVTTWLEQPLDGTVVSSTQSESHKFSASCLDERGVVWVGDQGVFLLGNNEVTYTATSVFVSASKQQHVAIPVSSSKEPSFHKPDPA 393
            MGLTL+VHP  RLTIQAPTVSLARTEA    +     ++LGSIDFQVTTWLEQP DGT+               LDERGVVWVGDQGV L  N++VTYTATSV VSASK  +VA PV+SS+E SFHK DPA
Sbjct:   82 MGLTLIVHPAARLTIQAPTVSLARTEAM---QDDPVLVLLGSIDFQVTTWLEQPFDGTM---------------LDERGVVWVGDQGVVLADNSKVTYTATSVVVSASK--NVADPVASSEEASFHKSDPA 192

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BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Match: D8LNC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC7_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 6.260e-8
Identity = 44/106 (41.51%), Postives = 57/106 (53.77%), Query Frame = 1

Query:    1 MGLTLVVHPGVRLTIQAPTVSLARTEASALERPTRARLVLGSIDFQVTTWLEQPLDGTVVSSTQSESHKFSASCLDERGVVWVGDQGVFLLGNNEVTYTATSVFVS 318
            MG+ L VHPG +LTI+APTV + R E   ++     R V GSI F+VT WL + LDGT+               +D+ GVV    QG  L   N + YTA SV V+
Sbjct:   83 MGVALKVHPGAKLTIRAPTVMMKRRE---MDNQPILR-VFGSIQFEVTRWLPEHLDGTL---------------MDKHGVVAFEGQGS-LESRNTIRYTAASVVVA 168

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BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Match: D8LJ57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ57_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.090e-7
Identity = 39/121 (32.23%), Postives = 69/121 (57.02%), Query Frame = 1

Query:    4 GLTLVVHPGVRLTIQAPTVSLARTEASALERPTRARLVLGSIDFQVTTWLEQPLDGTVVSSTQSESHKFSASCLDERGVVWVGDQGVFLLGNNEVTYTATSVFVS--ASKQQHVAIPVSSS 360
            G+ L+VHPG  LTI+APT+++ + ++   ++P     VLGS+DFQVT+W+++ L+G  V               D+ G++ V  +G+ +  +  + +TA SV V+  A+  +  A P  +S
Sbjct:   83 GIALLVHPGAELTIRAPTINMKKGKSMQDQQPILR--VLGSVDFQVTSWVKEHLEGAPV---------------DDHGIISVEGEGM-VRSDKAILFTARSVIVADPAAANKKEADPAETS 185

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BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Match: A0A6H5LGE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGE1_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.090e-7
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 2

Query:  422 MVMATRTSKLVMRSPPPRSRPLLIRHLRALRRIARKLNEK-KGGY 553
            MVMATRTS+L++  P PRSRPL IRHLR+LRRIA KLNEK KGGY
Sbjct:    1 MVMATRTSRLMIPFPLPRSRPLFIRHLRSLRRIAPKLNEKQKGGY 45

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BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Match: A0A6H5KKU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKU9_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.500e-7
Identity = 47/122 (38.52%), Postives = 63/122 (51.64%), Query Frame = 1

Query:    1 MGLTLVVHPGVRLTIQAPTVSLARTEASALERPTRARLVLGSIDFQVTTWLEQPLDGTVVSSTQSESHKFSASCLDERGVVWVGDQGVFLLGNNEVTYTATSVFVS---ASKQQHVAIPVSS 357
            MG+ L VH G +LTI+APTV + R E   ++     R V G++ F VT WL + LDGT+               +DE GVV    QG  L   N + YTATSV V+   A+ Q+   +  SS
Sbjct:    4 MGIALKVHAGAKLTIRAPTVVMKRRE---MDNQPILR-VFGNVQFDVTRWLPEHLDGTL---------------MDEHGVVAFEGQGS-LESRNTIRYTATSVVVADPAAADQKEADLTASS 105

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BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Match: D8LNB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNB6_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 2.090e-7
Identity = 44/106 (41.51%), Postives = 56/106 (52.83%), Query Frame = 1

Query:    1 MGLTLVVHPGVRLTIQAPTVSLARTEASALERPTRARLVLGSIDFQVTTWLEQPLDGTVVSSTQSESHKFSASCLDERGVVWVGDQGVFLLGNNEVTYTATSVFVS 318
            MG+ L VHPG +LTI APTV + R E   ++     R   GSI F+VT WL + LDGT+               +D+ GVV    QG  L   N + YTATSV V+
Sbjct:   96 MGVALKVHPGAKLTICAPTVMMKRRE---MDNQPILR-AFGSIHFEVTRWLPEHLDGTL---------------MDKHGVVAFEGQGS-LESRNTIRYTATSVVVA 181

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BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Match: D7G9B0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B0_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 1.870e-5
Identity = 36/106 (33.96%), Postives = 57/106 (53.77%), Query Frame = 1

Query:    1 MGLTLVVHPGVRLTIQAPTVSLARTEASALERPTRARLVLGSIDFQVTTWLEQPLDGTVVSSTQSESHKFSASCLDERGVVWVGDQGVFLLGNNEVTYTATSVFVS 318
            MG+ LVVH G R+TI+APTV + +TE    +   R   V GS++F+VT W+ + L+GT+                D  G+V    QG+ +     + YT+++V V+
Sbjct:  106 MGVGLVVHSGARVTIRAPTVLMQKTETMRGQPVLR---VQGSVEFEVTNWVPEHLEGTLA---------------DNHGIVSCEGQGL-VRSKMAILYTSSAVIVA 192

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7G0T1_ECTSI	1.140e-39	47.31	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FMM4_ECTSI	7.480e-38	64.89	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D8LNC7_ECTSI	6.260e-8	41.51	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D8LJ57_ECTSI	1.090e-7	32.23	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5LGE1_9PHAE	1.090e-7	77.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KKU9_9PHAE	1.500e-7	38.52	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LNB6_ECTSI	2.090e-7	41.51	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7G9B0_ECTSI	1.870e-5	33.96	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Properties


Property Name	Value
Stop	1
Start	1
Model size	561
Hectar predicted targeting category	other localisation
Exons	4
Cds size	561

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp6_S_contig103:101347..103479+
coding sequence from alignment at Ecto-sp6_S_contig103:101347..103479+

protein sequence of mRNA_Ecto-sp6_S_contig103.887.1

>prot_Ecto-sp6_S_contig103.887.1 ID=prot_Ecto-sp6_S_contig103.887.1|Name=mRNA_Ecto-sp6_S_contig103.887.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=187bp
MGLTLVVHPGVRLTIQAPTVSLARTEASALERPTRARLVLGSIDFQVTTW
LEQPLDGTVVSSTQSESHKFSASCLDERGVVWVGDQGVFLLGNNEVTYTA
TSVFVSASKQQHVAIPVSSSKEPSFHKPDPAPSSTAADSNDGDGDKNVQA
GDAVPTSTVTSSVNSPSESTSSDRAKAKRKKRRLCS*

mRNA from alignment at Ecto-sp6_S_contig103:101347..103479+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp6_S_contig103.887.1 ID=mRNA_Ecto-sp6_S_contig103.887.1|Name=mRNA_Ecto-sp6_S_contig103.887.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2133bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:101347..103479+ (Ectocarpus species6 EcLAC_371)
ATGGGGCTCACGCTGGTCGTACACCCAGGGGTCCGCCTCACGATCCAAGC
CCCCACGGTGTCGTTGGCAAGGACTGAGGCAAGTGCACTTGAGCGTGAAG
AAGTCTAACGTTCGTTGCAATGGTACGGGAAGATTGAGATACCTCTGCTA
TCGGATTGATACTACAGCAGAAGAAGTACTGTAAATTTGAGTCTAGCGAT
TTTTCCGTATGAGAATTGGTTGTTATTATTTCGAAAGGAAACAAAATACG
TCCCCGCCCCGTTTCTCAAATAAATACGAACTCCCTTTGACAGGCTATGC
AGGACCAACCCGTGCTAGATTGGTGCTGGGCTCCATCGACTTTCAGGTCA
CCACGTGGCTTGAGCAACCGCTTGACGGCACTGTGGTGAGTAGCACACAG
AGCGAATCGCACAAGTTTTCGGCGTCATGTGTTCGGTACTCCGCCTTAGG
CTCCTCCCTCCGCCCAAGACGATTTGCTTTAATTTTGAGCAGGCATGACT
GACTGGGATAAAACCTCATGTGTAGCCCGCTGGACCGGCTGGAATTGGCC
CCGCGAGGTTGTGTATATATATTACGAAATGAACTGAACGTTTTGTCATC
GAGACACACAACGTGTTATTCGGGTTGGGTTCTCTTGACTATCATCACCA
ACGCTAATGTCGCTGACGTCTTCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTCGCTTCGGTGTTCTCAC
ATACATGCACAGCTGGACGAACGCGGTGTAGTGTGGGTCGGAGACCAGGG
CGTATTCTTGTTGGGCAACAACGAGGTCACATACACGGCCACATCCGTCT
TTGTGTCTGCTTCGAAGGTACACACATAATTTTCTTGAGTTTCCTCATGG
TGAGACGCACACGCCAGTTGCGTTTCGGGAGTAGTCCATGTAGCTCACTG
GGCCGACTGGAATTAGCCCCGTGAGAGAGTCTACATCTTTTTTTAGAAAC
GCGCTGGACGGTGAGACTAGTCATCGAGACACACAACGTGTTAGGCAAAT
GTTGGGTTCTCTTACGTGACGAACATCAACGACAATGTCGTCGGCGTCTG
CTGATGCTGATGCTGATGCTGATGCTGATGAGGCTGTGGATTTGGTGTTT
TCACATGCATAGATGGACGAACGCGGTGCGGGGTGGCTTGAAACTCAAGG
CTCAGTCCTGTCGGGCAACAATAAGATCACATACACGGCCAACTCCGTGG
TTGTGTGAGCTGATAAGATACATGCACGCACATATTGTATTATGTGCACG
CATCTTATCAGCTGACACAACAACAGAGTTGGCCGTGTACGTGACCTTGG
TGCCGGAAAGCACTGATCCTTGAGTTTCAAGCCACACCACACCGCTTTCG
TCCATCTGTGCATGTGAGAACACTAATGCCACAGCAGCAGCAACAGCAGC
AGTGGCTGCAGCAGCAGACGTTAGCGACACGGTGAGGCGCACATTCCTGT
CGGTTGCGTTTCGGGAGTAACCCATTTCTCAGGGGCGAACGCATAGAGGC
AGATAGGTCCTGGTGTTGCAAGCATGCCGTATTGTACGAGGACCGTGATC
ACATTCTTCTTCTCTATTGACACGGTTTAAGCCATTTGAGGGTCTAGAGG
AAGCTCGACTCTGTGATTGGCACTGTTAATATTGTTGCAGAACATATATG
TGTTGGCGAACTGTTGGGTGCGGGGTAGCGGGTGGTCACGCGATCTTGAA
TTTGCGTGTCCTCTTTTGAATCCTAACTGCGTTTCAACGCTGCTTGTTGT
GGGAAGGTTATTGACAATGTACTGCACTCGACTGGCCTCCCCACGTCCCC
TCTGTCGCTGCCGCGGTCTCCCGCCCACGCACCCCGCGCATCCAAACAGC
AACAGCACGTGGCCATCCCAGTTTCTTCGTCCAAAGAACCCTCCTTCCAC
AAGCCCGACCCTGCGCCGTCCTCCACCGCTGCCGACTCCAACGATGGTGA
TGGCGACAAGAACGTCCAAGCTGGTGATGCGGTCCCCACCTCCACGGTCA
CGTCCTCTGTTAATTCGCCATCTGAGAGCACTTCGTCGGATCGCGCGAAA
GCTAAACGAAAAAAAAGGCGGCTATGCTCATGA

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:101347..103479+

>mRNA_Ecto-sp6_S_contig103.887.1 ID=mRNA_Ecto-sp6_S_contig103.887.1|Name=mRNA_Ecto-sp6_S_contig103.887.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=561bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:101347..103479+ (Ectocarpus species6 EcLAC_371)
ATGGGGCTCACGCTGGTCGTACACCCAGGGGTCCGCCTCACGATCCAAGC
CCCCACGGTGTCGTTGGCAAGGACTGAGGCAAGTGCACTTGAGCGACCAA
CCCGTGCTAGATTGGTGCTGGGCTCCATCGACTTTCAGGTCACCACGTGG
CTTGAGCAACCGCTTGACGGCACTGTGGTGAGTAGCACACAGAGCGAATC
GCACAAGTTTTCGGCGTCATGTCTGGACGAACGCGGTGTAGTGTGGGTCG
GAGACCAGGGCGTATTCTTGTTGGGCAACAACGAGGTCACATACACGGCC
ACATCCGTCTTTGTGTCTGCTTCGAAGCAACAGCACGTGGCCATCCCAGT
TTCTTCGTCCAAAGAACCCTCCTTCCACAAGCCCGACCCTGCGCCGTCCT
CCACCGCTGCCGACTCCAACGATGGTGATGGCGACAAGAACGTCCAAGCT
GGTGATGCGGTCCCCACCTCCACGGTCACGTCCTCTGTTAATTCGCCATC
TGAGAGCACTTCGTCGGATCGCGCGAAAGCTAAACGAAAAAAAAGGCGGC
TATGCTCATGA