Homology
BLAST of mRNA_Ecto-sp6_S_contig103.886.1 vs. uniprot
Match:
R1CIT9_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CIT9_EMIHU)
HSP 1 Score: 87.0 bits (214), Expect = 3.060e-20
Identity = 46/93 (49.46%), Postives = 56/93 (60.22%), Query Frame = 1
Query: 1 PKDHTVVCTKSGTCVIGRYKPFGGKTAHERLATAGNIKSPAIGASIKPGGKVALKSESVNREKHGKCDMAGTRLGEATRRRIEAGKVMSTKDY 279
PK TVVC CVIG YKP TAHERLA A + P + SIKP G+VAL+SES+NR CD AGT+LG+ ++ G V K+Y
Sbjct: 3 PKSGTVVCDGE-KCVIGNYKPTKDGTAHERLAKAAGMDKPKVAGSIKPDGRVALRSESINRTNGLGCDAAGTKLGQWAEMKMALGDVEGVKEY 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.886.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 3.06e-20 / Id = 49.46 Sequence R1CIT9_EMIHU
Match Name E-value Identity Description
R1CIT9_EMIHU 3.060e-20 49.46 Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 0 Model size 297 Hectar predicted targeting category other localisation Exons 2 Cds size 297
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348740.022797-CDS-Ecto-sp6_S_contig103:92669..92784 1682348740.022797-CDS-Ecto-sp6_S_contig103:92669..92784 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig103 92670..92784 - 1682348740.0325904-CDS-Ecto-sp6_S_contig103:93149..93331 1682348740.0325904-CDS-Ecto-sp6_S_contig103:93149..93331 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig103 93150..93331 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig103.886.1
>prot_Ecto-sp6_S_contig103.886.1 ID=prot_Ecto-sp6_S_contig103.886.1|Name=mRNA_Ecto-sp6_S_contig103.886.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=99bp
PKDHTVVCTKSGTCVIGRYKPFGGKTAHERLATAGNIKSPAIGASIKPGG back to top mRNA from alignment at Ecto-sp6_S_contig103:92670..93331-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.886.1 ID=mRNA_Ecto-sp6_S_contig103.886.1|Name=mRNA_Ecto-sp6_S_contig103.886.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=662bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:92670..93331- (Ectocarpus species6 EcLAC_371)CCCAAAGACCATACCGTGGTCTGTACTAAATCCGGCACCTGTGTGATAGG
CCGGTACAAGCCCTTCGGCGGGAAAACGGCGCATGAGCGCCTGGCGACCG
CGGGGAACATCAAAAGCCCCGCTATCGGGGCGTCGATCAAGCCAGGCGGC
AAAGTGGCCTTGAAGTCCGAGTCTGTCAACAG GTGAGCTCAAAATTCCAT
AGGCGTTGAGATTTTGGCTGCCTTTAACAACTCGGCTAGTCTTTAACAGC
TACTTCGTAGGTGAAGACACGCCACGAAATTCGCAATGAAAGTCCGTTGT
TGTTGTAAGCGCCTGTGGCCAATTACAAGCCGAATATTCCGAGGGGCGGT
TCAGACCGATCGGAGTAATGTACGGTAGCAAGCGACAACCAGTCAATGCC
ATTGCGTGAAGACAATTAACGCGACTTCTTCTTGTAACTGGAAACGCCTT
CGTGAGGATACTATTAAACAGGTCCACACCCAGTCCCCGACTAGACTACT
GCAGGCTGCTGAAAACTGCCATTTTGTGATGATCAACGCCAAGTCAGGGA
GAAGCACGGCAAGTGTGACATGGCCGGCACGAGACTTGGGGAGGCGACCA
GGCGCCGTATCGAGGCCGGCAAAGTCATGAGCACCAAGGACTACACCACT
CGCCATAAACAG back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:92670..93331-
>mRNA_Ecto-sp6_S_contig103.886.1 ID=mRNA_Ecto-sp6_S_contig103.886.1|Name=mRNA_Ecto-sp6_S_contig103.886.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:92670..93331- (Ectocarpus species6 EcLAC_371) back to top