mRNA_Ecto-sp6_S_contig103.897.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig103.897.1
Unique NamemRNA_Ecto-sp6_S_contig103.897.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig103.897.1 vs. uniprot
Match: A0A6H5JZC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZC0_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 1.880e-69
Identity = 123/134 (91.79%), Postives = 124/134 (92.54%), Query Frame = 1 
Query:    1 KRPRRKSGLRPGRGWEIGAAGGGGFRLEESGGYDLCLPVGVVEANPGRRRVRLSADVRGYLCPRDEGRLLRSGLVTSSIKIGAERHSVEAITGDGTVLVLDRKYRGPAVAAGPGPEDAARMAAASGSLPRQDAA 402
            KRP R SGLRPGRGWEIGAAGGGGFRLEESGGYDLCLPVGVVEA PGRRRVRLSADVRGYLCPRDEGRLLRSGLVTSSIKIGAERHSVEAITGDGTVLVLDRKYRGPAVA  PGP DAARM AAS SLPR + A
Sbjct:  849 KRPTRISGLRPGRGWEIGAAGGGGFRLEESGGYDLCLPVGVVEATPGRRRVRLSADVRGYLCPRDEGRLLRSGLVTSSIKIGAERHSVEAITGDGTVLVLDRKYRGPAVATEPGPGDAARMTAASASLPRHNGA 982
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BLAST of mRNA_Ecto-sp6_S_contig103.897.1 vs. uniprot
Match: D7FXV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV0_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 1.700e-21
Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 KRPRRKSGLRPGRGWEIGAAGGGGFRLEESGGYDLCLPVGVVEANPGRRR 150
            KRPRRKSGLRPGRGWEIGAAGGGGF LEES GYDLCLPVGVVEANPGRRR
Sbjct:  645 KRPRRKSGLRPGRGWEIGAAGGGGFLLEESEGYDLCLPVGVVEANPGRRR 694
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZC0_9PHAE1.880e-6991.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXV0_ECTSI1.700e-2196.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig103contigEcto-sp6_S_contig103:182726..183175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size452
Hectar predicted targeting categoryother localisation
Exons1
Cds size450
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348739.6417236-CDS-Ecto-sp6_S_contig103:182725..1831751682348739.6417236-CDS-Ecto-sp6_S_contig103:182725..183175Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 182726..183175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig103.897.1prot_Ecto-sp6_S_contig103.897.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig103 182726..183175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig103.897.1

>prot_Ecto-sp6_S_contig103.897.1 ID=prot_Ecto-sp6_S_contig103.897.1|Name=mRNA_Ecto-sp6_S_contig103.897.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=150bp
KRPRRKSGLRPGRGWEIGAAGGGGFRLEESGGYDLCLPVGVVEANPGRRR
VRLSADVRGYLCPRDEGRLLRSGLVTSSIKIGAERHSVEAITGDGTVLVL
DRKYRGPAVAAGPGPEDAARMAAASGSLPRQDAAPAAAASSSAASSPDGG
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mRNA from alignment at Ecto-sp6_S_contig103:182726..183175+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.897.1 ID=mRNA_Ecto-sp6_S_contig103.897.1|Name=mRNA_Ecto-sp6_S_contig103.897.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=450bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:182726..183175+ (Ectocarpus species6 EcLAC_371)
AAGAGGCCCAGGAGGAAGTCCGGGCTTAGGCCCGGTCGCGGGTGGGAGAT
CGGGGCCGCCGGGGGCGGCGGCTTCCGGCTGGAGGAGTCCGGGGGCTACG
ACCTGTGTCTTCCCGTCGGGGTCGTGGAGGCGAACCCGGGGCGTCGCAGG
GTGAGGCTCTCGGCGGACGTGCGGGGCTACCTGTGCCCGCGCGACGAGGG
GCGGCTGCTGAGGAGCGGCCTGGTGACGTCGTCGATCAAGATCGGGGCGG
AGAGGCACTCGGTGGAGGCGATCACCGGCGACGGCACGGTGCTGGTTCTG
GACCGGAAGTACCGAGGGCCGGCCGTGGCCGCCGGACCGGGGCCCGAGGA
CGCGGCGCGGATGGCAGCGGCTTCGGGGTCTTTACCGCGGCAAGATGCTG
CTCCTGCTGCTGCTGCTTCTTCTTCTGCTGCGTCGTCACCGGACGGTGGT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:182726..183175+

>mRNA_Ecto-sp6_S_contig103.897.1 ID=mRNA_Ecto-sp6_S_contig103.897.1|Name=mRNA_Ecto-sp6_S_contig103.897.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:182726..183175+ (Ectocarpus species6 EcLAC_371)
AAGAGGCCCAGGAGGAAGTCCGGGCTTAGGCCCGGTCGCGGGTGGGAGAT
CGGGGCCGCCGGGGGCGGCGGCTTCCGGCTGGAGGAGTCCGGGGGCTACG
ACCTGTGTCTTCCCGTCGGGGTCGTGGAGGCGAACCCGGGGCGTCGCAGG
GTGAGGCTCTCGGCGGACGTGCGGGGCTACCTGTGCCCGCGCGACGAGGG
GCGGCTGCTGAGGAGCGGCCTGGTGACGTCGTCGATCAAGATCGGGGCGG
AGAGGCACTCGGTGGAGGCGATCACCGGCGACGGCACGGTGCTGGTTCTG
GACCGGAAGTACCGAGGGCCGGCCGTGGCCGCCGGACCGGGGCCCGAGGA
CGCGGCGCGGATGGCAGCGGCTTCGGGGTCTTTACCGCGGCAAGATGCTG
CTCCTGCTGCTGCTGCTTCTTCTTCTGCTGCGTCGTCACCGGACGGTGGT
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