mRNA_Ecto-sp6_S_contig102.873.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig102.873.1 vs. uniprot
Match: D7G976_ECTSI (Fibronectin type III domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G976_ECTSI) HSP 1 Score: 482 bits (1240), Expect = 3.480e-171 Identity = 252/266 (94.74%), Postives = 258/266 (96.99%), Query Frame = 1
Query: 1 MPLLGALFLALTSGAVIGRASGESVESSACEFSTFLSLRAEWDADDEPCQKKLSFELWSFMKAEGSAQNPDAQRVRASCVEYEEMEIGLVELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATAITFEAFCEDENIERVTRVASVLEAYPRNKRGGRTRRHLQSTTSEAGQAHQVAELIDGLKNLGCTRTTGEDQKLCVLSDSFN*LGDAATLKDLGDLPEVEVVKEIPEGYEGTDEGSAMIELAYDIASGATFKFSTAKGGEQ 798
MPLLGALFLALTSGAVIGRASGESVESSACEFSTFLSLRAEWDADDEPCQKKLSFELW+FM+AEGSAQ+PDAQRVRASCVE+E EIG+VELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATA+TFEAFCEDENIERVTRVASVLEAYPRNKR GRTRRHLQSTTSEAGQAHQVAELIDGLKNLGCTRTTGEDQKLCVLSDSFN GDAATLKD GDLPEVEVVKEIPEGYEG DEGSAMIELAYDIASGATFKFSTA GGEQ
Sbjct: 1 MPLLGALFLALTSGAVIGRASGESVESSACEFSTFLSLRAEWDADDEPCQKKLSFELWTFMQAEGSAQSPDAQRVRASCVEHE--EIGVVELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATAMTFEAFCEDENIERVTRVASVLEAYPRNKRSGRTRRHLQSTTSEAGQAHQVAELIDGLKNLGCTRTTGEDQKLCVLSDSFNYFGDAATLKDSGDLPEVEVVKEIPEGYEGVDEGSAMIELAYDIASGATFKFSTAYGGEQ 264
BLAST of mRNA_Ecto-sp6_S_contig102.873.1 vs. uniprot
Match: A0A6H5KTN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTN7_9PHAE) HSP 1 Score: 337 bits (865), Expect = 4.450e-115 Identity = 172/191 (90.05%), Postives = 182/191 (95.29%), Query Frame = 1
Query: 112 LRAEWDADDEPCQKKLSFELWSFMKAEGSAQNPDAQRVRASCVEYEEMEIGLVELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATAITFEAFCEDENIERVTRVASVLEAYPRNKRGGRTRRHLQSTTSEAGQAHQVAELIDGLKNLGCTRTTGEDQKLCVLSDSFN*LGDAATLKDLGDLPEVEVVK 684
+RA+WDADDEPCQKKLSFELW+FMKAEGSA NPDAQRVRASCVE+E EIGLVELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATAITFEAFCEDENIERVTRVA V+EAYP NK GG+TRRHLQS+TS+AGQAHQVAELIDGLKNLGCTRTTGED+KLCVLSDSFN LG AATLKD GDLPEVEV+K
Sbjct: 15 IRADWDADDEPCQKKLSFELWTFMKAEGSAHNPDAQRVRASCVEHE--EIGLVELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATAITFEAFCEDENIERVTRVAPVVEAYPFNKHGGQTRRHLQSSTSQAGQAHQVAELIDGLKNLGCTRTTGEDKKLCVLSDSFNYLGKAATLKDSGDLPEVEVIK 203
BLAST of mRNA_Ecto-sp6_S_contig102.873.1 vs. uniprot
Match: UPI00196B5695 (Ig-like domain-containing protein n=1 Tax=Aquisphaera sp. JC669 TaxID=2712864 RepID=UPI00196B5695) HSP 1 Score: 64.3 bits (155), Expect = 6.230e-8 Identity = 36/69 (52.17%), Postives = 43/69 (62.32%), Query Frame = 1
Query: 577 TGEDQKLCVLSDSFN*LGDAATLKDLGDLPE-VEVVKEIPEGYEGTDEGSAMIELAYDIASGATFKFST 780
TG + V+SDSFN LG AT GDLP V +VKEIP G+ GTDEG M + Y IA GAT F++
Sbjct: 185 TGAGVSVGVMSDSFNYLGGYATDISTGDLPSGVNIVKEIPSGFTGTDEGRGMAQNVYKIAPGATLSFAS 253
BLAST of mRNA_Ecto-sp6_S_contig102.873.1 vs. uniprot
Match: UPI00168A40D6 (S8 family serine peptidase n=1 Tax=Spirosoma validum TaxID=2771355 RepID=UPI00168A40D6) HSP 1 Score: 61.6 bits (148), Expect = 3.730e-7 Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query: 484 RHLQSTTSEAGQAHQVAELIDGLKNLGCTRTTGEDQKLCVLSDSFN*LGDAATLKDLGDLP-EVEVVKEIPEGYEGTDEGSAMIELAYDIASGATFKFST 780
+++ TTS+ +A Q +++ + N+ +G K+ V+SDS+N L AA GDLP V+VV++IP Y G+DEG AM E+ +D+A GA F+T
Sbjct: 152 KNVGKTTSQGDRA-QKSDVARQMYNV-----SGAGSKVGVISDSYNSLRGAADGVASGDLPPNVQVVRDIPARYTGSDEGRAMAEIVHDVAPGANIAFNT 245
BLAST of mRNA_Ecto-sp6_S_contig102.873.1 vs. uniprot
Match: A0A1I1N3X0_9BACT (Por secretion system C-terminal sorting domain-containing protein n=1 Tax=Spirosoma endophyticum TaxID=662367 RepID=A0A1I1N3X0_9BACT) HSP 1 Score: 58.5 bits (140), Expect = 4.260e-6 Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 1
Query: 577 TGEDQKLCVLSDSFN*LGDAATLKDLGDLP-EVEVVKEIPEGYEGTDEGSAMIELAYDIASGATFKFSTAKGGE 795
TG K+ VLSDS+N LG A GDLP V+V++EI + G+DEG AM E+ +D+A GA F++A G+
Sbjct: 177 TGAGNKVGVLSDSYNALGGAPDGVASGDLPPNVQVLEEIDDLTNGSDEGRAMAEIVHDVAPGADIAFNSAFNGQ 250
BLAST of mRNA_Ecto-sp6_S_contig102.873.1 vs. uniprot
Match: A0A845YP49_9CYAN (S8 family serine peptidase n=1 Tax=Symploca sp. SIO2G7 TaxID=2607798 RepID=A0A845YP49_9CYAN) HSP 1 Score: 57.4 bits (137), Expect = 9.920e-6 Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 1
Query: 577 TGEDQKLCVLSDSFN*LGDAATLKDLGDLPEVEVVKEIPEGYEGTDEGSAMIELAYDIASGATFKFSTAKGGE 795
TG + VLSDSF+ LG A + GDLP+V V+ ++P G G+DEG AM++L DIA GA F TA G+
Sbjct: 121 TGAGVTVGVLSDSFDNLGGATADRLSGDLPDVNVLLDLPGG--GSDEGRAMLQLIADIAPGADLAFHTAFLGQ 191
BLAST of mRNA_Ecto-sp6_S_contig102.873.1 vs. uniprot
Match: A0A2T2S5Q7_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium QH_10_64_37 TaxID=1919091 RepID=A0A2T2S5Q7_9BACT) HSP 1 Score: 57.0 bits (136), Expect = 1.410e-5 Identity = 48/119 (40.34%), Postives = 59/119 (49.58%), Query Frame = 1
Query: 496 STTSEAGQAH--QVAELIDGLKNLGCTRTTGEDQKLCVLSDSFN*LGDAATLKD---LGDLP----------EVEVVKEIPEGYEGTD-----EGSAMIELAYDIASGATFKFSTAKGG 792
S SEA AH A L G T+G QK+CVLSDS+N A + + GDLP V+V+ E Y+GTD EG AM++L +DIA GAT F TA GG
Sbjct: 191 SVESEADSAHAADTARLNTG--------TSGNGQKVCVLSDSYNTASVATSASEDVQSGDLPGNGNPAGRTTPVDVL----EDYDGTDPSPTDEGRAMLQLIHDIAPGATLGFHTAFGG 297 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.873.1 >prot_Ecto-sp6_S_contig102.873.1 ID=prot_Ecto-sp6_S_contig102.873.1|Name=mRNA_Ecto-sp6_S_contig102.873.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=208bp MPLLGALFLALTSGAVIGRASGESVESSACEFSTFLSLRAEWDADDEPCQback to top mRNA from alignment at Ecto-sp6_S_contig102:551155..554703+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig102.873.1 ID=mRNA_Ecto-sp6_S_contig102.873.1|Name=mRNA_Ecto-sp6_S_contig102.873.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3549bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:551155..554703+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:551155..554703+ >mRNA_Ecto-sp6_S_contig102.873.1 ID=mRNA_Ecto-sp6_S_contig102.873.1|Name=mRNA_Ecto-sp6_S_contig102.873.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:551155..554703+ (Ectocarpus species6 EcLAC_371)back to top |