mRNA_Ecto-sp6_S_contig102.870.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_Ecto-sp6_S_contig102.870.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 5.920e-37
Identity = 67/83 (80.72%), Postives = 73/83 (87.95%), Query Frame = 1

Query:    7 VLGNMQEEIKKATLPIIHYGLDLWTCKVSWRKYLSVHVSYVDSNFTLRHALLAVKHYSPSAAIQGTETATEALFAIFRATLAE 255
            V+GNMQEEI KA LPIIHYGLDLWTCKVS RKYL VHV YVDSNF+LRHAL++VKHY+PS  IQGTE A+E LF IFRATLAE
Sbjct:  205 VVGNMQEEINKAPLPIIHYGLDLWTCKVSGRKYLGVHVFYVDSNFSLRHALISVKHYAPSTEIQGTEKASEILFTIFRATLAE 287

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BLAST of mRNA_Ecto-sp6_S_contig102.870.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 4.480e-26
Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 1

Query:    1 QAVLGNMQEEIKKATLPIIHYGLDLWTCKVSWRKYLSVHVSYVDSNFTLRHALLAVKHYSPSAAIQGTETATEALFAIFRATLAE 255
            +AV+GNM  EI++A LPI+HYG+DLW CK++  KY+ VHV YV+SN  L+H LLAVKHY+PSAA+Q T  A+E LF +F + L E
Sbjct:  222 KAVVGNMLTEIERAPLPIVHYGIDLWQCKITGLKYIDVHVCYVNSNLELQHELLAVKHYAPSAAVQATGKASEILFNVFNSVLRE 306

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BLAST of mRNA_Ecto-sp6_S_contig102.870.1 vs. uniprot
Match: A0A6H5JN28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN28_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.530e-24
Identity = 45/79 (56.96%), Postives = 63/79 (79.75%), Query Frame = 1

Query:   19 MQEEIKKATLPIIHYGLDLWTCKVSWRKYLSVHVSYVDSNFTLRHALLAVKHYSPSAAIQGTETATEALFAIFRATLAE 255
            M  EI++A LPI+HYG+DLW CK++  KY+  HV YV+SNF L++ALL+VKHY+PSAA+Q T+ A+E LF +F++ L E
Sbjct:    1 MLTEIERAPLPIVHYGIDLWQCKITGLKYIDGHVCYVNSNFELQYALLSVKHYAPSAAVQVTDKASEILFIVFKSVLRE 79

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BLAST of mRNA_Ecto-sp6_S_contig102.870.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.670e-18
Identity = 39/85 (45.88%), Postives = 61/85 (71.76%), Query Frame = 1

Query:    1 QAVLGNMQEEIKKATLPIIHYGLDLWTCKVSWRKYLSVHVSYVDSNFTLRHALLAVKHYSPSAAIQGTETATEALFAIFRATLAE 255
            + V+GNM +E+++A LPI+H+ +D+WT K S RK+L +HV YVD+NF L+ ALL++K Y+P     G + A++ LF I ++ L E
Sbjct:  239 KVVVGNMVQEVERAPLPILHHNIDIWTDKGSGRKFLGLHVFYVDANFELKDALLSIKRYAPDQGSLGDQRASDVLFQIMKSVLEE 323

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BLAST of mRNA_Ecto-sp6_S_contig102.870.1 vs. uniprot
Match: A0A6H5JXM2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXM2_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.590e-12
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1

Query:    4 AVLGNMQEEIKKATLPIIHYGLDLWTCKVSWRKYLSVH 117
            AV+GNM EEIKKA LPI+HYG+DLWTCK S  K++ VH
Sbjct:   33 AVMGNMSEEIKKAPLPIVHYGVDLWTCKTSGMKFIDVH 70

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BLAST of mRNA_Ecto-sp6_S_contig102.870.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.120e-9
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 1

Query:    1 QAVLGNMQEEIKKATLPIIHYGLDLWTCKVSWRKYL 108
            +AV+GNM EEIKKA LPI+HYG+DLWTCK S  K++
Sbjct:   52 KAVMGNMLEEIKKAPLPIVHYGVDLWTCKTSGMKFI 87

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig102.870.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig102.870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5JYQ2_9PHAE	5.920e-37	80.72	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L1G0_9PHAE	4.480e-26	58.82	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JN28_9PHAE	2.530e-24	56.96	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JJJ9_9PHAE	1.670e-18	45.88	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JXM2_9PHAE	1.590e-12	71.05	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JVT2_9PHAE	2.120e-9	69.44	Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec...	[more]

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682348738.9686337-UTR-Ecto-sp6_S_contig102:502263..502281	1682348738.9686337-UTR-Ecto-sp6_S_contig102:502263..502281	Ectocarpus species6 EcLAC_371	UTR	Ecto-sp6_S_contig102 502264..502281 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682348738.9760833-CDS-Ecto-sp6_S_contig102:502281..502428	1682348738.9760833-CDS-Ecto-sp6_S_contig102:502281..502428	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig102 502282..502428 +
1682348738.9835553-CDS-Ecto-sp6_S_contig102:502862..502952	1682348738.9835553-CDS-Ecto-sp6_S_contig102:502862..502952	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig102 502863..502952 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig102.870.1	prot_Ecto-sp6_S_contig102.870.1	Ectocarpus species6 EcLAC_371	polypeptide	Ecto-sp6_S_contig102 502282..502952 +