mRNA_Ecto-sp6_S_contig102.870.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig102.870.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE) HSP 1 Score: 138 bits (347), Expect = 5.920e-37 Identity = 67/83 (80.72%), Postives = 73/83 (87.95%), Query Frame = 1 Query: 7 VLGNMQEEIKKATLPIIHYGLDLWTCKVSWRKYLSVHVSYVDSNFTLRHALLAVKHYSPSAAIQGTETATEALFAIFRATLAE 255
V+GNMQEEI KA LPIIHYGLDLWTCKVS RKYL VHV YVDSNF+LRHAL++VKHY+PS IQGTE A+E LF IFRATLAE
Sbjct: 205 VVGNMQEEINKAPLPIIHYGLDLWTCKVSGRKYLGVHVFYVDSNFSLRHALISVKHYAPSTEIQGTEKASEILFTIFRATLAE 287
BLAST of mRNA_Ecto-sp6_S_contig102.870.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE) HSP 1 Score: 109 bits (273), Expect = 4.480e-26 Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 1 Query: 1 QAVLGNMQEEIKKATLPIIHYGLDLWTCKVSWRKYLSVHVSYVDSNFTLRHALLAVKHYSPSAAIQGTETATEALFAIFRATLAE 255
+AV+GNM EI++A LPI+HYG+DLW CK++ KY+ VHV YV+SN L+H LLAVKHY+PSAA+Q T A+E LF +F + L E
Sbjct: 222 KAVVGNMLTEIERAPLPIVHYGIDLWQCKITGLKYIDVHVCYVNSNLELQHELLAVKHYAPSAAVQATGKASEILFNVFNSVLRE 306
BLAST of mRNA_Ecto-sp6_S_contig102.870.1 vs. uniprot
Match: A0A6H5JN28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN28_9PHAE) HSP 1 Score: 100 bits (248), Expect = 2.530e-24 Identity = 45/79 (56.96%), Postives = 63/79 (79.75%), Query Frame = 1 Query: 19 MQEEIKKATLPIIHYGLDLWTCKVSWRKYLSVHVSYVDSNFTLRHALLAVKHYSPSAAIQGTETATEALFAIFRATLAE 255
M EI++A LPI+HYG+DLW CK++ KY+ HV YV+SNF L++ALL+VKHY+PSAA+Q T+ A+E LF +F++ L E
Sbjct: 1 MLTEIERAPLPIVHYGIDLWQCKITGLKYIDGHVCYVNSNFELQYALLSVKHYAPSAAVQVTDKASEILFIVFKSVLRE 79
BLAST of mRNA_Ecto-sp6_S_contig102.870.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 1.670e-18 Identity = 39/85 (45.88%), Postives = 61/85 (71.76%), Query Frame = 1 Query: 1 QAVLGNMQEEIKKATLPIIHYGLDLWTCKVSWRKYLSVHVSYVDSNFTLRHALLAVKHYSPSAAIQGTETATEALFAIFRATLAE 255
+ V+GNM +E+++A LPI+H+ +D+WT K S RK+L +HV YVD+NF L+ ALL++K Y+P G + A++ LF I ++ L E
Sbjct: 239 KVVVGNMVQEVERAPLPILHHNIDIWTDKGSGRKFLGLHVFYVDANFELKDALLSIKRYAPDQGSLGDQRASDVLFQIMKSVLEE 323
BLAST of mRNA_Ecto-sp6_S_contig102.870.1 vs. uniprot
Match: A0A6H5JXM2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXM2_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 1.590e-12 Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1 Query: 4 AVLGNMQEEIKKATLPIIHYGLDLWTCKVSWRKYLSVH 117
AV+GNM EEIKKA LPI+HYG+DLWTCK S K++ VH
Sbjct: 33 AVMGNMSEEIKKAPLPIVHYGVDLWTCKTSGMKFIDVH 70
BLAST of mRNA_Ecto-sp6_S_contig102.870.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 2.120e-9 Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 1 Query: 1 QAVLGNMQEEIKKATLPIIHYGLDLWTCKVSWRKYL 108
+AV+GNM EEIKKA LPI+HYG+DLWTCK S K++
Sbjct: 52 KAVMGNMLEEIKKAPLPIVHYGVDLWTCKTSGMKFI 87 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.870.1 >prot_Ecto-sp6_S_contig102.870.1 ID=prot_Ecto-sp6_S_contig102.870.1|Name=mRNA_Ecto-sp6_S_contig102.870.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=79bp MQEEIKKATLPIIHYGLDLWTCKVSWRKYLSVHVSYVDSNFTLRHALLAVback to top mRNA from alignment at Ecto-sp6_S_contig102:502264..502952+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig102.870.1 ID=mRNA_Ecto-sp6_S_contig102.870.1|Name=mRNA_Ecto-sp6_S_contig102.870.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=689bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:502264..502952+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:502264..502952+ >mRNA_Ecto-sp6_S_contig102.870.1 ID=mRNA_Ecto-sp6_S_contig102.870.1|Name=mRNA_Ecto-sp6_S_contig102.870.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:502264..502952+ (Ectocarpus species6 EcLAC_371)back to top |