mRNA_Ecto-sp6_S_contig102.865.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig102.865.1 vs. uniprot
Match: D7G979_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G979_ECTSI) HSP 1 Score: 249 bits (635), Expect = 1.670e-74 Identity = 145/167 (86.83%), Postives = 145/167 (86.83%), Query Frame = 3 Query: 129 MMVQGFSSVFASAVCLLAASTSAFVVPSARVHALAPRAATTTTATSASALRTSARHSRRSALFMSEEAEEVAPEAP----VAEQDPAQDATTSVKSFFAPNENVRLGSSRDQDGKSNVWAVEPKMRVEGTDVETPESNSLLVVGGIVGALVVAMSATIALLPSPDSM 617
MMVQGFSSVFASAVCLL ASTSAFVVPSARVHALAPRAA TT LRTSARHSRRSALFMSEE VAEQDPAQDATTSVKSFFAPNENVRLGSSRDQDGKSNVWAVEPKMRVEGTDVETPESNSLLVVGGIVGALVVAMSATIALLPSPDSM
Sbjct: 1 MMVQGFSSVFASAVCLLTASTSAFVVPSARVHALAPRAAAATTXXXXXXLRTSARHSRRSALFMSEEXXXXXXXXXXXXXVAEQDPAQDATTSVKSFFAPNENVRLGSSRDQDGKSNVWAVEPKMRVEGTDVETPESNSLLVVGGIVGALVVAMSATIALLPSPDSM 167
BLAST of mRNA_Ecto-sp6_S_contig102.865.1 vs. uniprot
Match: A0A836C6Z0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6Z0_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 4.480e-12 Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 3 Query: 366 QDPAQDATTSVKSFFAPNENVRLGSSRDQDGKSNVWAVEPKMRVEGTDVETPESNSLLVVGGIVGALVVA-MSATIALLPSPDS 614
+D A+ FF PN N+R G+SRDQDGKSNVWA+EPKM+VE E + L G I+ A+ A + AT+A LPSPD+
Sbjct: 66 EDEAEAPQFGQSGFFQPNANMRYGASRDQDGKSNVWAIEPKMKVE----EGENKGASLATGAIILAVAAAAVVATLANLPSPDT 145
BLAST of mRNA_Ecto-sp6_S_contig102.865.1 vs. uniprot
Match: A0A835YKW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKW3_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 2.490e-9 Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 3 Query: 405 FFAPNENVRLGSSRDQDGKSNVWAVEPKMRVEGTDVETPESNSLLVVGGIVGALVVAMSATIALLPSPD 611
FF PN N+R G+SRDQDGKSNVWA+EPKM V+ D SN ++ A +V ++ I+ LPS +
Sbjct: 86 FFQPNANMRYGASRDQDGKSNVWAIEPKMAVDTDDKSGALSNGF----AVLAASLVVVAGVISQLPSAE 150
BLAST of mRNA_Ecto-sp6_S_contig102.865.1 vs. uniprot
Match: A0A6V1QUM9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QUM9_HETAK) HSP 1 Score: 65.9 bits (159), Expect = 1.090e-8 Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = 3 Query: 408 FAPNENVRLGSSRDQDGKSNVWAVEPKMRVEGTDVETPESNSLLVVGGIVGALVVAMSATIALLPSPDSM 617
FA NE R+G SRD+DGKSNVWAV PK V + + S SL +V L V ++ATI+ LPSPDS+
Sbjct: 111 FANNERSRVGVSRDEDGKSNVWAVFPKEEVVDSQAD---SGSLSTAAVLVAGLSVLVAATISFLPSPDSL 177
BLAST of mRNA_Ecto-sp6_S_contig102.865.1 vs. uniprot
Match: A0A7S2W9V8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W9V8_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 9.960e-8 Identity = 34/69 (49.28%), Postives = 41/69 (59.42%), Query Frame = 3 Query: 405 FFAPNENVRLGSSRDQDGKSNVWAVEPKMRVEGTDVETPESNSLLVVGGIVGALVVAMSATIALLPSPD 611
FF+ RLG+S DQDGKSNVWAVEPKM+VE E LV+GG A V + + +LP PD
Sbjct: 44 FFSTPPAQRLGTSVDQDGKSNVWAVEPKMQVE-VGKEGQGVQQALVIGGGAAAAVALATLIVNVLPDPD 111
BLAST of mRNA_Ecto-sp6_S_contig102.865.1 vs. uniprot
Match: A0A7S2BRW2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BRW2_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 5.350e-7 Identity = 32/61 (52.46%), Postives = 38/61 (62.30%), Query Frame = 3 Query: 429 RLGSSRDQDGKSNVWAVEPKMRVEGTDVETPESNSLLVVGGIVGALVVAMSATIALLPSPD 611
RLGSS DQDGKSNVWAVEPKM VE E ++GG A +A+ +A LP+PD
Sbjct: 83 RLGSSVDQDGKSNVWAVEPKMEVE-VSKEGDGFKKTAIIGGGAAAAAIAVFGIVANLPNPD 142
BLAST of mRNA_Ecto-sp6_S_contig102.865.1 vs. uniprot
Match: K0R0P9_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R0P9_THAOC) HSP 1 Score: 58.9 bits (141), Expect = 6.770e-7 Identity = 29/64 (45.31%), Postives = 37/64 (57.81%), Query Frame = 3 Query: 426 VRLGSSRDQDGKSNVWAVEPKMRVEGTDVETPESNSLLVVGGIVGALVVAMSATIALLPSPDSM 617
+ G S DQDGKSNVWA+EPKM VE E + L V G+ GA V + ++ LP PD +
Sbjct: 45 IERGVSMDQDGKSNVWAIEPKMEVENKSSEEKTGSVLAAVAGL-GAFAVVAAGVLSNLPDPDQL 107
BLAST of mRNA_Ecto-sp6_S_contig102.865.1 vs. uniprot
Match: B8LD08_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LD08_THAPS) HSP 1 Score: 58.5 bits (140), Expect = 8.350e-7 Identity = 30/65 (46.15%), Postives = 37/65 (56.92%), Query Frame = 3 Query: 417 NENVRLGSSRDQDGKSNVWAVEPKMRVEGTDVETPESNSLLVVGGIVGALVVAMSATIALLPSPD 611
N V G S DQDGKSNVWA+EPKM +E E +L+ VGG VA + ++ LP PD
Sbjct: 46 NNFVERGVSMDQDGKSNVWAIEPKMEIENKSTEEKTGGALIAVGGFAVFAAVA-AGVLSNLPDPD 109
BLAST of mRNA_Ecto-sp6_S_contig102.865.1 vs. uniprot
Match: A0A6U2FP18_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2FP18_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 4.050e-6 Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 3 Query: 411 APNENVRLGSSRDQDGKSNVWAVEPKMRVEGTDVETPESNSLLVVGGIVGALVVAMSATIALLPSPD 611
+P V G S DQDGKSNVWA+EPKM V+ E +++L+ VGG+ VA + + LP PD
Sbjct: 45 SPVNVVERGVSVDQDGKSNVWAIEPKMEVDTKSSEEKTTSTLVAVGGLAAFAAVA-AGILTNLPDPD 110
BLAST of mRNA_Ecto-sp6_S_contig102.865.1 vs. uniprot
Match: A0A7S0AI54_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AI54_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 7.540e-6 Identity = 28/59 (47.46%), Postives = 36/59 (61.02%), Query Frame = 3 Query: 435 GSSRDQDGKSNVWAVEPKMRVEGTDVETPESNSLLVVGGIVGALVVAMSATIALLPSPD 611
G S DQDGKSNVWA+EPKM V+ E + +L+ VGG+ VA + + LP PD
Sbjct: 53 GVSVDQDGKSNVWAIEPKMEVDTKSAEEKTTGTLIAVGGLAAFAAVA-AGVLTNLPDPD 110 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.865.1 >prot_Ecto-sp6_S_contig102.865.1 ID=prot_Ecto-sp6_S_contig102.865.1|Name=mRNA_Ecto-sp6_S_contig102.865.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=164bp MMVQGFSSVFASAVCLLAASTSAFVVPSARVHALAPRAATTTTATSASALback to top mRNA from alignment at Ecto-sp6_S_contig102:475067..480536- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig102.865.1 ID=mRNA_Ecto-sp6_S_contig102.865.1|Name=mRNA_Ecto-sp6_S_contig102.865.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5470bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:475067..480536- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:475067..480536- >mRNA_Ecto-sp6_S_contig102.865.1 ID=mRNA_Ecto-sp6_S_contig102.865.1|Name=mRNA_Ecto-sp6_S_contig102.865.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:475067..480536- (Ectocarpus species6 EcLAC_371)back to top |