Homology
BLAST of mRNA_Ecto-sp6_S_contig102.862.1 vs. uniprot
Match:
D8LGJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ8_ECTSI)
HSP 1 Score: 82.4 bits (202), Expect = 1.680e-18
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = -1
Query: 61 GAAWAFVVVVGALTRVVSSSWVFLAGGWEEPESAWQWRKDP 183
GAAWAFVVVVGALTRVVSSS FLAGGWEEPESAWQWR+DP
Sbjct: 22 GAAWAFVVVVGALTRVVSSSRFFLAGGWEEPESAWQWREDP 62
BLAST of mRNA_Ecto-sp6_S_contig102.862.1 vs. uniprot
Match:
D8LR06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR06_ECTSI)
HSP 1 Score: 77.0 bits (188), Expect = 3.750e-16
Identity = 42/59 (71.19%), Postives = 43/59 (72.88%), Query Frame = -2
Query: 63 GSCTAVITDLRQRASRCRGQRGHLSL*SARL-PGW*AAAGFFLPVVGRSRSPLGNGEKT 236
GSCTAVITDLRQRASRCRG + S R G GFFLPVVGRSRSPLGNGEKT
Sbjct: 19 GSCTAVITDLRQRASRCRGGSVGICRCSRRAYQGGEQPQGFFLPVVGRSRSPLGNGEKT 77
BLAST of mRNA_Ecto-sp6_S_contig102.862.1 vs. uniprot
Match:
A0A6H5KB56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB56_9PHAE)
HSP 1 Score: 57.4 bits (137), Expect = 2.740e-8
Identity = 32/57 (56.14%), Postives = 36/57 (63.16%), Query Frame = -3
Query: 119 DEGGAAQGFSVGRFSR*RGAAQQSSQISANALPDVGGSVGICRCSRRAYQGGEQQLG 289
DEGGAAQGF +G G+ + + A GGSV ICRCSRRAYQGGEQQ G
Sbjct: 3 DEGGAAQGFLLGGSQDEGGSCSVITDLRQRASRCRGGSVRICRCSRRAYQGGEQQQG 59
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.862.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 1.68e-18 / Id = 92.68 Expect = 3.75e-16 / Id = 71.19 Expect = 2.74e-8 / Id = 56.14 Sequence D8LGJ8_ECTSI D8LR06_ECTSI A0A6H5KB56_9PHAE
Match Name E-value Identity Description
D8LGJ8_ECTSI 1.680e-18 92.68 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] D8LR06_ECTSI 3.750e-16 71.19 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5KB56_9PHAE 2.740e-8 56.14 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 0 Model size 352 Hectar predicted targeting category mitochondrion Exons 1 Cds size 306
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348738.2784863-CDS-Ecto-sp6_S_contig102:454549..454855 1682348738.2784863-CDS-Ecto-sp6_S_contig102:454549..454855 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig102 454550..454855 +
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348738.2870207-UTR-Ecto-sp6_S_contig102:454855..454900 1682348738.2870207-UTR-Ecto-sp6_S_contig102:454855..454900 Ectocarpus species6 EcLAC_371 UTR Ecto-sp6_S_contig102 454856..454900 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.862.1
>prot_Ecto-sp6_S_contig102.862.1 ID=prot_Ecto-sp6_S_contig102.862.1|Name=mRNA_Ecto-sp6_S_contig102.862.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=102bp
KLKLLPVFSATGTNRIVGLGRVFSPLPSGLRLLPTTGKKNPAAAHHPGKR back to top mRNA from alignment at Ecto-sp6_S_contig102:454550..454900+
Legend: CDS polypeptide UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig102.862.1 ID=mRNA_Ecto-sp6_S_contig102.862.1|Name=mRNA_Ecto-sp6_S_contig102.862.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=351bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:454550..454900+ (Ectocarpus species6 EcLAC_371)AAACTCAAATTGCTACCAGTATTCTCTGCTACAGGTACCAACCGGATTGT
CGGTCTTGGCAGGGTCTTTTCTCCATTGCCAAGCGGACTCCGGCTCCTCC
CAACCACCGGCAAGAAAAACCCAGCTGCTGCTCACCACCCTGGTAAGCGC
GCCGACTACAACGACAAATGCCCACGCTGCCCCCTACATCTGGAAGCGCG
TTGGCGGAGATCTGTGATGACTGCTGTGCAGCTCCCCTTCATCTGGAGAA
CCGTCCAACCGAAAAGCCCTGCGCTGCCCCCCCTTCATCTGGAGGCGCGG
AGGTGA AGAAAATGTTGCCCTCCCCTACATCTGGAGAGCGTTGACCCGCG
T back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:454550..454900+
>mRNA_Ecto-sp6_S_contig102.862.1 ID=mRNA_Ecto-sp6_S_contig102.862.1|Name=mRNA_Ecto-sp6_S_contig102.862.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:454550..454900+ (Ectocarpus species6 EcLAC_371) back to top