mRNA_Ecto-sp6_S_contig102.862.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig102.862.1
Unique NamemRNA_Ecto-sp6_S_contig102.862.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig102.862.1 vs. uniprot
Match: D8LGJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ8_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.680e-18
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = -1 
Query:   61 GAAWAFVVVVGALTRVVSSSWVFLAGGWEEPESAWQWRKDP 183
            GAAWAFVVVVGALTRVVSSS  FLAGGWEEPESAWQWR+DP
Sbjct:   22 GAAWAFVVVVGALTRVVSSSRFFLAGGWEEPESAWQWREDP 62
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BLAST of mRNA_Ecto-sp6_S_contig102.862.1 vs. uniprot
Match: D8LR06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR06_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 3.750e-16
Identity = 42/59 (71.19%), Postives = 43/59 (72.88%), Query Frame = -2 
Query:   63 GSCTAVITDLRQRASRCRGQRGHLSL*SARL-PGW*AAAGFFLPVVGRSRSPLGNGEKT 236
            GSCTAVITDLRQRASRCRG    +   S R   G     GFFLPVVGRSRSPLGNGEKT
Sbjct:   19 GSCTAVITDLRQRASRCRGGSVGICRCSRRAYQGGEQPQGFFLPVVGRSRSPLGNGEKT 77
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BLAST of mRNA_Ecto-sp6_S_contig102.862.1 vs. uniprot
Match: A0A6H5KB56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB56_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.740e-8
Identity = 32/57 (56.14%), Postives = 36/57 (63.16%), Query Frame = -3 
Query:  119 DEGGAAQGFSVGRFSR*RGAAQQSSQISANALPDVGGSVGICRCSRRAYQGGEQQLG 289
            DEGGAAQGF +G      G+    + +   A    GGSV ICRCSRRAYQGGEQQ G
Sbjct:    3 DEGGAAQGFLLGGSQDEGGSCSVITDLRQRASRCRGGSVRICRCSRRAYQGGEQQQG 59
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LGJ8_ECTSI1.680e-1892.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LR06_ECTSI3.750e-1671.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB56_9PHAE2.740e-856.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig102contigEcto-sp6_S_contig102:454550..454900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size352
Hectar predicted targeting categorymitochondrion
Exons1
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348738.2784863-CDS-Ecto-sp6_S_contig102:454549..4548551682348738.2784863-CDS-Ecto-sp6_S_contig102:454549..454855Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 454550..454855 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348738.2870207-UTR-Ecto-sp6_S_contig102:454855..4549001682348738.2870207-UTR-Ecto-sp6_S_contig102:454855..454900Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig102 454856..454900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig102.862.1prot_Ecto-sp6_S_contig102.862.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig102 454550..454855 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig102.862.1

>prot_Ecto-sp6_S_contig102.862.1 ID=prot_Ecto-sp6_S_contig102.862.1|Name=mRNA_Ecto-sp6_S_contig102.862.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=102bp
KLKLLPVFSATGTNRIVGLGRVFSPLPSGLRLLPTTGKKNPAAAHHPGKR
ADYNDKCPRCPLHLEARWRRSVMTAVQLPFIWRTVQPKSPALPPLHLEAR
R*
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mRNA from alignment at Ecto-sp6_S_contig102:454550..454900+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig102.862.1 ID=mRNA_Ecto-sp6_S_contig102.862.1|Name=mRNA_Ecto-sp6_S_contig102.862.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=351bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:454550..454900+ (Ectocarpus species6 EcLAC_371)
AAACTCAAATTGCTACCAGTATTCTCTGCTACAGGTACCAACCGGATTGT
CGGTCTTGGCAGGGTCTTTTCTCCATTGCCAAGCGGACTCCGGCTCCTCC
CAACCACCGGCAAGAAAAACCCAGCTGCTGCTCACCACCCTGGTAAGCGC
GCCGACTACAACGACAAATGCCCACGCTGCCCCCTACATCTGGAAGCGCG
TTGGCGGAGATCTGTGATGACTGCTGTGCAGCTCCCCTTCATCTGGAGAA
CCGTCCAACCGAAAAGCCCTGCGCTGCCCCCCCTTCATCTGGAGGCGCGG
AGGTGAAGAAAATGTTGCCCTCCCCTACATCTGGAGAGCGTTGACCCGCG
T
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:454550..454900+

>mRNA_Ecto-sp6_S_contig102.862.1 ID=mRNA_Ecto-sp6_S_contig102.862.1|Name=mRNA_Ecto-sp6_S_contig102.862.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:454550..454900+ (Ectocarpus species6 EcLAC_371)
AAACTCAAATTGCTACCAGTATTCTCTGCTACAGGTACCAACCGGATTGT
CGGTCTTGGCAGGGTCTTTTCTCCATTGCCAAGCGGACTCCGGCTCCTCC
CAACCACCGGCAAGAAAAACCCAGCTGCTGCTCACCACCCTGGTAAGCGC
GCCGACTACAACGACAAATGCCCACGCTGCCCCCTACATCTGGAAGCGCG
TTGGCGGAGATCTGTGATGACTGCTGTGCAGCTCCCCTTCATCTGGAGAA
CCGTCCAACCGAAAAGCCCTGCGCTGCCCCCCCTTCATCTGGAGGCGCGG
AGGTGA
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