Homology
BLAST of mRNA_Ecto-sp6_S_contig102.852.1 vs. uniprot
Match:
D7G977_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G977_ECTSI)
HSP 1 Score: 105 bits (262), Expect = 1.330e-24
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = -2
Query: 39 ATAEASHDPSDPASVYVDLLVNGDPAPFVFRIPPKKAPHRQPRLSDGGVSEL 194
ATAEASHDP+DPASV+VDLLVNGDPAP VFRIPPKKAPHRQPRLSDGGVSEL
Sbjct: 170 ATAEASHDPADPASVFVDLLVNGDPAPLVFRIPPKKAPHRQPRLSDGGVSEL 221
BLAST of mRNA_Ecto-sp6_S_contig102.852.1 vs. uniprot
Match:
A0A6H5JC06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC06_9PHAE)
HSP 1 Score: 104 bits (260), Expect = 2.470e-24
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = -2
Query: 42 ATAEASHDPSDPASVYVDLLVNGDPAPFVFRIPPKKAPHRQPRLSDGGVSE 194
ATAEASHDPSDPASV+VDLLVNGDPAP VFRIPPKKAPHRQPRLSDGGVSE
Sbjct: 126 ATAEASHDPSDPASVFVDLLVNGDPAPLVFRIPPKKAPHRQPRLSDGGVSE 176
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.852.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.33e-24 / Id = 94.23 Expect = 2.47e-24 / Id = 96.08 Sequence D7G977_ECTSI A0A6H5JC06_9PHAE
Match Name E-value Identity Description
D7G977_ECTSI 1.330e-24 94.23 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5JC06_9PHAE 2.470e-24 96.08 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 255 Hectar predicted targeting category other localisation Exons 2 Ec32 ortholog description Hypothetical protein Ec32 ortholog Ec-13_002880.1 Cds size 255
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348737.608002-CDS-Ecto-sp6_S_contig102:277658..277699 1682348737.608002-CDS-Ecto-sp6_S_contig102:277658..277699 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig102 277659..277699 + 1682348737.617321-CDS-Ecto-sp6_S_contig102:278263..278477 1682348737.617321-CDS-Ecto-sp6_S_contig102:278263..278477 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig102 278264..278477 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.852.1
>prot_Ecto-sp6_S_contig102.852.1 ID=prot_Ecto-sp6_S_contig102.852.1|Name=mRNA_Ecto-sp6_S_contig102.852.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=85bp
MLHNYKTENARQLSSETPPSDNRGCRWGAFLGGMRNTNGAGSPLTRRSTY back to top mRNA from alignment at Ecto-sp6_S_contig102:277659..278477+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig102.852.1 ID=mRNA_Ecto-sp6_S_contig102.852.1|Name=mRNA_Ecto-sp6_S_contig102.852.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=819bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:277659..278477+ (Ectocarpus species6 EcLAC_371)ATGCTTCACAACTACAAGACCGAGAATGCGCGACAACTAAG GTAAGCATA
TGCCATGCTATGTACACCGAATACCTTCACCCAGAAGATGCTCTTGCCCT
TCTTCATGTCGGGCGCAAGCACGGATGATAGCGTCAAGCGCTCCCCTGCC
GTGCCCCTCTTCGTCCTCCTGCAGCTGCTGCTGTCCTCGCGATCGCTTCG
CTTCGGCCGCACGCCGTCCTTGTCCGACAACTCCGACTGTTTCCTCTGCA
GCAGCTCCCGGGCACCGGATACTGTTGCCGAATGTCTTTCTTCGCGAGCC
CCCGAAGCTGCCGTCGGGGTATCCTGCCTCCCTTTGACGCCGACCGTCGC
CACCGTTGGCCTTACCGCTGCTGCCGCCGCCGCCGCCGCCGCCGCCGCGG
CCGACTCAACGGCCTTCTCGATCTCGGCCTCCACGAAAGCCATGTCTTGG
GATCGGTTGGCCCCGAACTCTCGGCACCACGCTGCCGCCGCCGCCACGAT
CGCCTCCTTCATATTTTCCTCCTCCTCCTCCCACTCATCTTCCAAACCCC
ACTCCTCCTCCTCCCCTCCCCTTCCTTGTTGTTGTTTTCCCGCCTCTTCT
TGCAGTTCAGAAACGCCGCCGTCGGATAATCGCGGCTGCCGGTGGGGCGC
CTTCTTGGGAGGGATGCGGAACACGAACGGGGCGGGGTCCCCGTTGACGA
GAAGGTCTACATACACCGATGCGGGGTCGGACGGGTCGTGGGAGGCCTCT
GCCGTTGCTGTTTGGATGGGGACGGTGAAGGGGGGGTTGTACGCATGTTT
CGCAAGCGTCGGCGGTTAG back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:277659..278477+
>mRNA_Ecto-sp6_S_contig102.852.1 ID=mRNA_Ecto-sp6_S_contig102.852.1|Name=mRNA_Ecto-sp6_S_contig102.852.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:277659..278477+ (Ectocarpus species6 EcLAC_371) back to top