mRNA_Ecto-sp6_S_contig102.852.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig102.852.1
Unique NamemRNA_Ecto-sp6_S_contig102.852.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig102.852.1 vs. uniprot
Match: D7G977_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G977_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.330e-24
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = -2 
Query:   39 ATAEASHDPSDPASVYVDLLVNGDPAPFVFRIPPKKAPHRQPRLSDGGVSEL 194
            ATAEASHDP+DPASV+VDLLVNGDPAP VFRIPPKKAPHRQPRLSDGGVSEL
Sbjct:  170 ATAEASHDPADPASVFVDLLVNGDPAPLVFRIPPKKAPHRQPRLSDGGVSEL 221
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BLAST of mRNA_Ecto-sp6_S_contig102.852.1 vs. uniprot
Match: A0A6H5JC06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC06_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 2.470e-24
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = -2 
Query:   42 ATAEASHDPSDPASVYVDLLVNGDPAPFVFRIPPKKAPHRQPRLSDGGVSE 194
            ATAEASHDPSDPASV+VDLLVNGDPAP VFRIPPKKAPHRQPRLSDGGVSE
Sbjct:  126 ATAEASHDPSDPASVFVDLLVNGDPAPLVFRIPPKKAPHRQPRLSDGGVSE 176
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G977_ECTSI1.330e-2494.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JC06_9PHAE2.470e-2496.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig102contigEcto-sp6_S_contig102:277659..278477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size255
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_002880.1
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348737.608002-CDS-Ecto-sp6_S_contig102:277658..2776991682348737.608002-CDS-Ecto-sp6_S_contig102:277658..277699Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 277659..277699 +
1682348737.617321-CDS-Ecto-sp6_S_contig102:278263..2784771682348737.617321-CDS-Ecto-sp6_S_contig102:278263..278477Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 278264..278477 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig102.852.1prot_Ecto-sp6_S_contig102.852.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig102 277659..278477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig102.852.1

>prot_Ecto-sp6_S_contig102.852.1 ID=prot_Ecto-sp6_S_contig102.852.1|Name=mRNA_Ecto-sp6_S_contig102.852.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=85bp
MLHNYKTENARQLSSETPPSDNRGCRWGAFLGGMRNTNGAGSPLTRRSTY
TDAGSDGSWEASAVAVWMGTVKGGLYACFASVGG*
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mRNA from alignment at Ecto-sp6_S_contig102:277659..278477+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig102.852.1 ID=mRNA_Ecto-sp6_S_contig102.852.1|Name=mRNA_Ecto-sp6_S_contig102.852.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=819bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:277659..278477+ (Ectocarpus species6 EcLAC_371)
ATGCTTCACAACTACAAGACCGAGAATGCGCGACAACTAAGGTAAGCATA
TGCCATGCTATGTACACCGAATACCTTCACCCAGAAGATGCTCTTGCCCT
TCTTCATGTCGGGCGCAAGCACGGATGATAGCGTCAAGCGCTCCCCTGCC
GTGCCCCTCTTCGTCCTCCTGCAGCTGCTGCTGTCCTCGCGATCGCTTCG
CTTCGGCCGCACGCCGTCCTTGTCCGACAACTCCGACTGTTTCCTCTGCA
GCAGCTCCCGGGCACCGGATACTGTTGCCGAATGTCTTTCTTCGCGAGCC
CCCGAAGCTGCCGTCGGGGTATCCTGCCTCCCTTTGACGCCGACCGTCGC
CACCGTTGGCCTTACCGCTGCTGCCGCCGCCGCCGCCGCCGCCGCCGCGG
CCGACTCAACGGCCTTCTCGATCTCGGCCTCCACGAAAGCCATGTCTTGG
GATCGGTTGGCCCCGAACTCTCGGCACCACGCTGCCGCCGCCGCCACGAT
CGCCTCCTTCATATTTTCCTCCTCCTCCTCCCACTCATCTTCCAAACCCC
ACTCCTCCTCCTCCCCTCCCCTTCCTTGTTGTTGTTTTCCCGCCTCTTCT
TGCAGTTCAGAAACGCCGCCGTCGGATAATCGCGGCTGCCGGTGGGGCGC
CTTCTTGGGAGGGATGCGGAACACGAACGGGGCGGGGTCCCCGTTGACGA
GAAGGTCTACATACACCGATGCGGGGTCGGACGGGTCGTGGGAGGCCTCT
GCCGTTGCTGTTTGGATGGGGACGGTGAAGGGGGGGTTGTACGCATGTTT
CGCAAGCGTCGGCGGTTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:277659..278477+

>mRNA_Ecto-sp6_S_contig102.852.1 ID=mRNA_Ecto-sp6_S_contig102.852.1|Name=mRNA_Ecto-sp6_S_contig102.852.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:277659..278477+ (Ectocarpus species6 EcLAC_371)
ATGCTTCACAACTACAAGACCGAGAATGCGCGACAACTAAGTTCAGAAAC
GCCGCCGTCGGATAATCGCGGCTGCCGGTGGGGCGCCTTCTTGGGAGGGA
TGCGGAACACGAACGGGGCGGGGTCCCCGTTGACGAGAAGGTCTACATAC
ACCGATGCGGGGTCGGACGGGTCGTGGGAGGCCTCTGCCGTTGCTGTTTG
GATGGGGACGGTGAAGGGGGGGTTGTACGCATGTTTCGCAAGCGTCGGCG
GTTAG
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